Wall clock time and date at job start Tue Mar 31 2020 21:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46901 * 180.02562 * 11 10 9 13 13 C 1.48074 * 110.99899 * 290.41478 * 12 11 10 14 14 C 1.54974 * 104.81981 * 213.97610 * 13 12 11 15 15 C 1.55316 * 101.74141 * 36.66356 * 14 13 12 16 16 C 1.46661 * 110.99851 * 169.99798 * 12 11 10 17 17 C 1.53896 * 110.87879 * 244.26691 * 16 12 11 18 18 C 1.54637 * 101.59211 * 96.54156 * 17 16 12 19 19 N 1.46843 * 105.50583 * 24.76852 * 18 17 16 20 20 C 1.46497 * 124.37102 * 163.10486 * 19 18 17 21 21 C 1.53001 * 109.47271 * 89.97240 * 20 19 18 22 22 F 1.39895 * 109.47003 * 60.00544 * 21 20 19 23 23 F 1.39906 * 109.47028 * 179.97438 * 21 20 19 24 24 F 1.39892 * 109.47374 * 300.00337 * 21 20 19 25 25 C 1.34664 * 111.26385 * 343.12314 * 19 18 17 26 26 O 1.21282 * 125.07514 * 180.83898 * 25 19 18 27 27 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 29 29 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 30 30 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 31 31 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 32 32 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 33 33 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 34 34 H 1.09002 * 110.36762 * 332.80932 * 13 12 11 35 35 H 1.09000 * 110.36774 * 95.13775 * 13 12 11 36 36 H 1.08997 * 110.97430 * 278.55420 * 14 13 12 37 37 H 1.09000 * 111.00498 * 154.79228 * 14 13 12 38 38 H 1.08994 * 110.74793 * 206.63176 * 15 14 13 39 39 H 1.09003 * 110.89735 * 83.36159 * 15 14 13 40 40 H 1.08996 * 111.00453 * 214.61990 * 17 16 12 41 41 H 1.08998 * 111.00188 * 338.42465 * 17 16 12 42 42 H 1.08996 * 110.24283 * 143.77990 * 18 17 16 43 43 H 1.09002 * 110.23971 * 265.76195 * 18 17 16 44 44 H 1.08998 * 109.47445 * 209.98182 * 20 19 18 45 45 H 1.09005 * 109.47179 * 329.97609 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4351 -6.1036 -0.0006 13 6 3.1473 -6.1935 -1.2956 14 6 3.3773 -7.7099 -1.5172 15 6 2.0694 -8.3158 -0.9386 16 6 1.7516 -7.3794 0.2367 17 6 2.2123 -8.0101 1.5627 18 6 1.0991 -7.5464 2.5307 19 7 -0.0775 -7.3008 1.6871 20 6 -1.4483 -7.1899 2.1917 21 6 -1.7486 -5.7295 2.5355 22 9 -1.6092 -4.9421 1.3876 23 9 -3.0580 -5.6236 3.0168 24 9 -0.8537 -5.2876 3.5157 25 6 0.2661 -7.1912 0.3896 26 8 -0.5061 -6.9734 -0.5198 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6043 -0.8905 31 1 2.8720 -3.6043 0.8894 32 1 0.8535 -5.0451 0.8886 33 1 0.8539 -5.0446 -0.8913 34 1 2.5324 -5.7820 -2.0961 35 1 4.1013 -5.6690 -1.2411 36 1 4.2477 -8.0579 -0.9611 37 1 3.4774 -7.9390 -2.5781 38 1 2.2379 -9.3335 -0.5868 39 1 1.2694 -8.2920 -1.6785 40 1 2.2387 -9.0973 1.4897 41 1 3.1829 -7.6174 1.8656 42 1 0.8839 -8.3275 3.2598 43 1 1.3981 -6.6287 3.0372 44 1 -2.1456 -7.5343 1.4280 45 1 -1.5570 -7.8034 3.0861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274043668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:48 Heat of formation + Delta-G solvation = -182.618314 kcal Electronic energy + Delta-G solvation = -31570.204419 eV Core-core repulsion = 26979.400932 eV Total energy + Delta-G solvation = -4590.803488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.95424 -47.53707 -47.36752 -41.49931 -37.97331 -36.59657 -34.45112 -32.83978 -32.36827 -30.12621 -28.85715 -28.10245 -26.14310 -24.25051 -23.64942 -22.62315 -21.49806 -21.25983 -19.81034 -19.14417 -18.44623 -18.26785 -17.78739 -16.81295 -16.29248 -16.09321 -15.58909 -15.33488 -14.71023 -14.47223 -14.37954 -14.35963 -14.18152 -13.95808 -13.84643 -13.75267 -13.56213 -13.53155 -13.26473 -12.90182 -12.69296 -12.49905 -12.39821 -12.17529 -12.02102 -11.82627 -11.68653 -11.33731 -11.04400 -11.01017 -10.76439 -10.68981 -10.47878 -10.43273 -10.05473 -9.60414 -9.27277 -9.14421 -8.98072 -8.26716 -8.22234 -5.90914 -3.93551 2.19047 2.44598 2.87860 3.36983 3.42653 3.46315 3.80607 3.85568 3.99160 4.10111 4.24622 4.33866 4.51930 4.54590 4.67014 4.79675 4.91125 4.92901 5.04177 5.06341 5.28966 5.43742 5.44143 5.61162 5.65232 5.68850 5.73291 5.78382 5.87680 5.97741 6.02563 6.12691 6.16737 6.36849 6.67437 6.71367 6.77027 7.03412 7.23222 7.30073 7.77751 7.91652 7.92743 8.09690 8.51590 9.13740 9.69795 11.20383 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.004760 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.243730 B = 5880.387167 C = 7876.026419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.099 4.099 11 C 0.041 3.959 12 N -0.495 5.495 13 C 0.040 3.960 14 C -0.125 4.125 15 C -0.123 4.123 16 C 0.068 3.932 17 C -0.113 4.113 18 C 0.101 3.899 19 N -0.623 5.623 20 C 0.089 3.911 21 C 0.428 3.572 22 F -0.164 7.164 23 F -0.185 7.185 24 F -0.180 7.180 25 C 0.522 3.478 26 O -0.504 6.504 27 H 0.259 0.741 28 H 0.013 0.987 29 H 0.014 0.986 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.125 0.875 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 -23.369 5.286 24.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.137 4.137 11 C -0.086 4.086 12 N -0.220 5.220 13 C -0.088 4.088 14 C -0.163 4.163 15 C -0.162 4.162 16 C -0.026 4.026 17 C -0.151 4.151 18 C -0.021 4.021 19 N -0.358 5.358 20 C -0.036 4.036 21 C 0.372 3.628 22 F -0.146 7.146 23 F -0.166 7.166 24 F -0.162 7.162 25 C 0.309 3.691 26 O -0.377 6.377 27 H 0.069 0.931 28 H 0.031 0.969 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.143 0.857 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.630 -22.991 5.214 23.631 hybrid contribution -0.454 1.279 -0.373 1.407 sum 1.176 -21.712 4.841 22.276 Atomic orbital electron populations 1.69987 1.06046 1.26446 1.50882 1.25036 0.94813 0.99189 0.95465 0.86612 0.79849 0.83614 0.78031 1.20720 1.21277 1.19876 1.21228 0.92949 0.91000 1.50412 0.92703 1.19037 0.93910 0.91260 0.97119 1.21580 0.99016 0.92389 1.00701 1.22694 0.93755 0.91257 1.00845 1.63955 1.25718 1.00358 1.31980 1.23209 0.99570 0.95880 0.90105 1.22737 0.97148 0.95270 1.01149 1.22713 0.98865 0.98139 0.96459 1.22012 0.89515 0.93578 0.97465 1.22668 0.99539 1.00127 0.92799 1.22319 0.84115 1.02052 0.93598 1.48190 1.06053 1.72821 1.08713 1.22455 0.86103 0.90694 1.04374 1.21294 0.74230 0.91903 0.75334 1.93328 1.95184 1.76926 1.49134 1.93180 1.37915 1.96899 1.88637 1.93195 1.68065 1.91434 1.63504 1.21093 0.91317 0.74798 0.81927 1.90763 1.57333 1.46650 1.42907 0.93087 0.96876 0.96767 0.93398 0.92686 0.91499 0.93793 0.92816 0.89415 0.90461 0.90611 0.90261 0.90270 0.89828 0.87636 0.89972 0.89940 0.85741 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.24 13.29 55.43 0.74 -27.51 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.37 9.11 -34.44 -0.31 -15.68 16 8 H 0.05 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.68 4.97 -27.88 -0.14 0.54 16 10 C -0.10 -2.19 5.20 -26.73 -0.14 -2.33 16 11 C 0.04 0.80 3.72 -3.82 -0.01 0.79 16 12 N -0.50 -7.41 4.80 -217.42 -1.04 -8.46 16 13 C 0.04 0.53 5.82 -2.13 -0.01 0.52 16 14 C -0.12 -1.23 7.08 -24.46 -0.17 -1.40 16 15 C -0.12 -1.29 6.05 -25.19 -0.15 -1.44 16 16 C 0.07 0.84 0.99 -132.20 -0.13 0.71 16 17 C -0.11 -0.98 6.42 -25.40 -0.16 -1.14 16 18 C 0.10 0.91 7.24 -2.99 -0.02 0.89 16 19 N -0.62 -7.31 2.65 -172.51 -0.46 -7.76 16 20 C 0.09 0.91 5.92 -4.04 -0.02 0.88 16 21 C 0.43 6.06 3.29 37.16 0.12 6.19 16 22 F -0.16 -3.14 16.32 2.25 0.04 -3.11 16 23 F -0.18 -2.50 17.32 2.25 0.04 -2.47 16 24 F -0.18 -2.70 17.09 2.25 0.04 -2.66 16 25 C 0.52 7.64 4.16 -11.13 -0.05 7.60 16 26 O -0.50 -9.23 16.07 5.56 0.09 -9.14 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 1.03 7.51 -51.93 -0.39 0.64 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.36 6.14 -51.93 -0.32 1.05 16 33 H 0.04 0.95 6.92 -51.93 -0.36 0.59 16 34 H 0.05 0.81 7.62 -51.93 -0.40 0.42 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.62 7.39 -51.93 -0.38 0.24 16 39 H 0.08 0.97 7.51 -51.93 -0.39 0.58 16 40 H 0.08 0.52 7.45 -51.93 -0.39 0.13 16 41 H 0.11 0.90 8.07 -51.93 -0.42 0.48 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.86 8.12 -51.93 -0.42 0.44 16 44 H 0.12 1.21 7.94 -51.93 -0.41 0.80 16 45 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 369.68 15.07 5.57 5.57 Total: -1.00 -35.75 369.68 -8.12 -43.86 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -6.80 Total: -3.45 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -1.31 Total: -2.31 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.77 Total: -43.73 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 0.11 Total: -8.23 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.75 -8.12 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.755 kcal (2) G-P(sol) polarization free energy of solvation -35.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds