Wall clock time and date at job start Tue Mar 31 2020 21:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46901 * 180.02562 * 11 10 9 13 13 C 1.48074 * 110.99899 * 290.41478 * 12 11 10 14 14 C 1.54974 * 104.81981 * 213.97610 * 13 12 11 15 15 C 1.55316 * 101.74141 * 36.66356 * 14 13 12 16 16 C 1.46661 * 110.99851 * 169.99798 * 12 11 10 17 17 C 1.53896 * 110.87879 * 244.26691 * 16 12 11 18 18 C 1.54637 * 101.59211 * 96.54156 * 17 16 12 19 19 N 1.46843 * 105.50583 * 24.76852 * 18 17 16 20 20 C 1.46497 * 124.37102 * 163.10486 * 19 18 17 21 21 C 1.53001 * 109.47271 * 89.97240 * 20 19 18 22 22 F 1.39895 * 109.47003 * 60.00544 * 21 20 19 23 23 F 1.39906 * 109.47028 * 179.97438 * 21 20 19 24 24 F 1.39892 * 109.47374 * 300.00337 * 21 20 19 25 25 C 1.34664 * 111.26385 * 343.12314 * 19 18 17 26 26 O 1.21282 * 125.07514 * 180.83898 * 25 19 18 27 27 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 29 29 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 30 30 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 31 31 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 32 32 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 33 33 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 34 34 H 1.09002 * 110.36762 * 332.80932 * 13 12 11 35 35 H 1.09000 * 110.36774 * 95.13775 * 13 12 11 36 36 H 1.08997 * 110.97430 * 278.55420 * 14 13 12 37 37 H 1.09000 * 111.00498 * 154.79228 * 14 13 12 38 38 H 1.08994 * 110.74793 * 206.63176 * 15 14 13 39 39 H 1.09003 * 110.89735 * 83.36159 * 15 14 13 40 40 H 1.08996 * 111.00453 * 214.61990 * 17 16 12 41 41 H 1.08998 * 111.00188 * 338.42465 * 17 16 12 42 42 H 1.08996 * 110.24283 * 143.77990 * 18 17 16 43 43 H 1.09002 * 110.23971 * 265.76195 * 18 17 16 44 44 H 1.08998 * 109.47445 * 209.98182 * 20 19 18 45 45 H 1.09005 * 109.47179 * 329.97609 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4351 -6.1036 -0.0006 13 6 3.1473 -6.1935 -1.2956 14 6 3.3773 -7.7099 -1.5172 15 6 2.0694 -8.3158 -0.9386 16 6 1.7516 -7.3794 0.2367 17 6 2.2123 -8.0101 1.5627 18 6 1.0991 -7.5464 2.5307 19 7 -0.0775 -7.3008 1.6871 20 6 -1.4483 -7.1899 2.1917 21 6 -1.7486 -5.7295 2.5355 22 9 -1.6092 -4.9421 1.3876 23 9 -3.0580 -5.6236 3.0168 24 9 -0.8537 -5.2876 3.5157 25 6 0.2661 -7.1912 0.3896 26 8 -0.5061 -6.9734 -0.5198 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5568 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6043 -0.8905 31 1 2.8720 -3.6043 0.8894 32 1 0.8535 -5.0451 0.8886 33 1 0.8539 -5.0446 -0.8913 34 1 2.5324 -5.7820 -2.0961 35 1 4.1013 -5.6690 -1.2411 36 1 4.2477 -8.0579 -0.9611 37 1 3.4774 -7.9390 -2.5781 38 1 2.2379 -9.3335 -0.5868 39 1 1.2694 -8.2920 -1.6785 40 1 2.2387 -9.0973 1.4897 41 1 3.1829 -7.6174 1.8656 42 1 0.8839 -8.3275 3.2598 43 1 1.3981 -6.6287 3.0372 44 1 -2.1456 -7.5343 1.4280 45 1 -1.5570 -7.8034 3.0861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274043668.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:41 Heat of formation + Delta-G solvation = -207.335678 kcal Electronic energy + Delta-G solvation = -31571.276245 eV Core-core repulsion = 26979.400932 eV Total energy + Delta-G solvation = -4591.875313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 20.76 seconds Orbital eigenvalues (eV) -51.16443 -48.70606 -48.68059 -42.51514 -39.07920 -37.66014 -36.29954 -34.47688 -33.55898 -31.81844 -29.81247 -28.98533 -28.05554 -25.41646 -24.89745 -24.06124 -22.76246 -22.25490 -21.44376 -20.23686 -19.62137 -19.46456 -18.86314 -18.55717 -17.78738 -17.17165 -16.71841 -16.57477 -16.43547 -15.90523 -15.69019 -15.58312 -15.37877 -15.11299 -14.94542 -14.86820 -14.83988 -14.81964 -14.54979 -14.34624 -13.94524 -13.71218 -13.57822 -13.47513 -13.20309 -13.15407 -13.04097 -12.76992 -12.51055 -12.45714 -12.18762 -12.11882 -11.91217 -11.56087 -11.53552 -11.45502 -11.21245 -11.08362 -10.61777 -10.09587 -9.47923 -8.23768 -6.37517 1.10525 1.35998 1.39352 1.50703 1.55919 1.82436 2.37329 2.75600 2.81405 2.91378 3.08449 3.12923 3.18608 3.46001 3.64665 3.82654 3.96029 4.03540 4.08151 4.14555 4.19895 4.27157 4.35813 4.54635 4.57287 4.64875 4.75445 4.81371 4.86813 4.89548 5.00880 5.04786 5.11533 5.15533 5.20412 5.25161 5.36884 5.43506 5.60714 5.75187 5.77501 5.84463 5.92258 6.17888 6.79292 6.86488 7.32487 8.88755 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010164 B = 0.004760 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.243730 B = 5880.387167 C = 7876.026419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.005 4.005 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.032 3.968 10 C -0.083 4.083 11 C 0.066 3.934 12 N -0.490 5.490 13 C 0.028 3.972 14 C -0.110 4.110 15 C -0.119 4.119 16 C 0.055 3.945 17 C -0.100 4.100 18 C 0.093 3.907 19 N -0.620 5.620 20 C 0.095 3.905 21 C 0.417 3.583 22 F -0.204 7.204 23 F -0.183 7.183 24 F -0.187 7.187 25 C 0.508 3.492 26 O -0.556 6.556 27 H 0.263 0.737 28 H -0.025 1.025 29 H -0.021 1.021 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.008 0.992 34 H 0.024 0.976 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.052 0.948 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.064 0.936 44 H 0.127 0.873 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.587 -25.643 6.751 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.005 4.005 10 C -0.121 4.121 11 C -0.062 4.062 12 N -0.215 5.215 13 C -0.099 4.099 14 C -0.148 4.148 15 C -0.158 4.158 16 C -0.038 4.038 17 C -0.138 4.138 18 C -0.027 4.027 19 N -0.353 5.353 20 C -0.030 4.030 21 C 0.361 3.639 22 F -0.185 7.185 23 F -0.164 7.164 24 F -0.169 7.169 25 C 0.296 3.704 26 O -0.432 6.432 27 H 0.072 0.928 28 H -0.007 1.007 29 H -0.002 1.002 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.043 0.957 35 H 0.112 0.888 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.137 0.863 39 H 0.071 0.929 40 H 0.142 0.858 41 H 0.131 0.869 42 H 0.148 0.852 43 H 0.082 0.918 44 H 0.145 0.855 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.325 -25.298 6.716 26.529 hybrid contribution -1.367 2.003 -0.801 2.554 sum 2.958 -23.295 5.915 24.216 Atomic orbital electron populations 1.70157 1.08212 1.27852 1.51545 1.26134 0.95778 1.03883 0.94460 0.85328 0.78676 0.77671 0.78656 1.19540 1.20675 1.18145 1.21650 0.93634 0.91904 1.50778 0.91590 1.18884 0.94172 0.93846 0.93618 1.21317 0.97714 0.91927 1.01127 1.22180 0.93507 0.92028 0.98513 1.63974 1.24315 1.00391 1.32808 1.23353 0.98847 0.99182 0.88502 1.22728 0.97778 0.91712 1.02546 1.22749 0.98179 0.99733 0.95121 1.22358 0.88092 0.92627 1.00707 1.22754 0.99379 1.02132 0.89502 1.22634 0.83187 1.02848 0.94079 1.48382 1.07455 1.71240 1.08255 1.22747 0.85564 0.87969 1.06724 1.22105 0.74196 0.93503 0.74073 1.93256 1.95411 1.78435 1.51426 1.93172 1.37776 1.97004 1.88473 1.93171 1.68309 1.91796 1.63594 1.21634 0.92196 0.74117 0.82448 1.90729 1.58800 1.48930 1.44736 0.92786 1.00655 1.00219 0.92768 0.92006 0.92920 0.97347 0.95717 0.88840 0.87636 0.89284 0.86322 0.92896 0.85838 0.86937 0.85209 0.91765 0.85504 0.80407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.54 13.29 21.45 0.28 -61.26 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.97 46.54 29.54 68.60 2.03 48.57 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -33.20 9.11 25.60 0.23 -32.97 16 8 H 0.07 3.81 7.74 -2.91 -0.02 3.78 16 9 C 0.03 1.93 4.97 29.85 0.15 2.08 16 10 C -0.08 -3.87 5.20 30.59 0.16 -3.71 16 11 C 0.07 2.72 3.72 86.30 0.32 3.04 16 12 N -0.49 -14.64 4.80 -841.77 -4.04 -18.68 16 13 C 0.03 0.76 5.82 86.75 0.51 1.26 16 14 C -0.11 -1.86 7.08 32.06 0.23 -1.63 16 15 C -0.12 -2.22 6.05 31.59 0.19 -2.02 16 16 C 0.06 1.28 0.99 3.27 0.00 1.29 16 17 C -0.10 -1.32 6.42 31.45 0.20 -1.12 16 18 C 0.09 1.37 7.24 86.87 0.63 2.00 16 19 N -0.62 -13.82 2.65 -818.15 -2.17 -15.99 16 20 C 0.09 1.82 5.92 86.38 0.51 2.34 16 21 C 0.42 12.21 3.29 71.98 0.24 12.44 16 22 F -0.20 -8.51 16.32 44.97 0.73 -7.78 16 23 F -0.18 -5.07 17.32 44.97 0.78 -4.29 16 24 F -0.19 -5.72 17.09 44.97 0.77 -4.95 16 25 C 0.51 15.04 4.16 87.62 0.36 15.40 16 26 O -0.56 -21.72 16.07 -3.04 -0.05 -21.77 16 27 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 28 H -0.02 -1.65 8.14 -2.39 -0.02 -1.67 16 29 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 30 H 0.05 2.43 7.51 -2.39 -0.02 2.41 16 31 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.05 2.31 6.14 -2.39 -0.01 2.29 16 33 H 0.01 0.40 6.92 -2.39 -0.02 0.38 16 34 H 0.02 0.79 7.62 -2.39 -0.02 0.77 16 35 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.12 1.28 7.39 -2.39 -0.02 1.26 16 39 H 0.05 1.28 7.51 -2.39 -0.02 1.26 16 40 H 0.12 0.73 7.45 -2.39 -0.02 0.71 16 41 H 0.11 1.42 8.07 -2.39 -0.02 1.40 16 42 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 44 H 0.13 2.42 7.94 -2.39 -0.02 2.40 16 45 H 0.18 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -86.10 369.68 3.52 -82.58 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 0.99 Total: 5.01 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 4.19 Total: -1.45 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -5.93 Total: -95.92 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.05 Total: -21.77 kcal Atomic # 9 Polarization: -19.30 SS G_CDS: 2.28 Total: -17.02 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -86.10 3.52 -82.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043668.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.751 kcal (2) G-P(sol) polarization free energy of solvation -86.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.77 seconds