Wall clock time and date at job start Tue Mar 31 2020 19:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46817 * 2 1 4 4 C 1.52999 * 109.47176 * 240.00060 * 2 1 3 5 5 N 1.46503 * 109.46934 * 185.00018 * 4 2 1 6 6 C 1.46504 * 120.00066 * 269.99928 * 5 4 2 7 7 C 1.36937 * 119.99855 * 89.99987 * 5 4 2 8 8 H 1.07994 * 120.00255 * 22.02981 * 7 5 4 9 9 C 1.38815 * 119.99617 * 202.02350 * 7 5 4 10 10 N 1.31614 * 120.00444 * 11.44153 * 9 7 5 11 11 Si 1.86802 * 119.99708 * 191.43343 * 9 7 5 12 12 H 1.48505 * 109.46993 * 60.00560 * 11 9 7 13 13 H 1.48498 * 109.47098 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47238 * 300.00496 * 11 9 7 15 15 N 1.46496 * 109.46785 * 120.00156 * 2 1 3 16 16 C 1.34776 * 119.99878 * 274.99980 * 15 2 1 17 17 O 1.21277 * 120.00367 * 0.02562 * 16 15 2 18 18 C 1.50706 * 120.00113 * 180.02562 * 16 15 2 19 19 C 1.50695 * 109.47315 * 180.02562 * 18 16 15 20 20 C 1.35129 * 125.69722 * 124.99646 * 19 18 16 21 21 N 1.36808 * 107.18734 * 180.02562 * 20 19 18 22 22 C 1.36610 * 132.54157 * 179.97438 * 21 20 19 23 23 C 1.35125 * 120.57368 * 179.97438 * 22 21 20 24 24 F 1.35098 * 119.87871 * 179.97438 * 23 22 21 25 25 C 1.40620 * 120.24545 * 0.03927 * 23 22 21 26 26 C 1.36005 * 119.68842 * 359.97438 * 25 23 22 27 27 C 1.37023 * 107.01564 * 359.97438 * 21 20 19 28 28 N 1.32615 * 108.03106 * 359.74264 * 27 21 20 29 29 H 1.08991 * 109.47710 * 299.99929 * 1 2 3 30 30 H 1.09006 * 109.47267 * 60.00296 * 1 2 3 31 31 H 1.09005 * 109.47383 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47620 * 304.99878 * 4 2 1 33 33 H 1.09003 * 109.47361 * 65.00032 * 4 2 1 34 34 H 1.09003 * 109.46867 * 94.04233 * 6 5 4 35 35 H 1.08999 * 109.46925 * 214.04240 * 6 5 4 36 36 H 1.09004 * 109.47016 * 334.04264 * 6 5 4 37 37 H 0.96995 * 120.00216 * 179.97438 * 10 9 7 38 38 H 0.97000 * 120.00483 * 95.00931 * 15 2 1 39 39 H 1.09007 * 109.46516 * 299.99767 * 18 16 15 40 40 H 1.08998 * 109.47464 * 59.99395 * 18 16 15 41 41 H 1.08007 * 126.40306 * 0.03378 * 20 19 18 42 42 H 1.07997 * 119.71525 * 359.97438 * 22 21 20 43 43 H 1.08002 * 120.15722 * 179.97438 * 25 23 22 44 44 H 1.08001 * 120.31170 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3344 0.2341 -1.7612 7 6 4.0849 -1.9158 -0.6022 8 1 3.5321 -2.8383 -0.5041 9 6 5.3885 -1.8344 -0.1321 10 7 5.9843 -0.6642 -0.0434 11 14 6.2971 -3.3859 0.3749 12 1 6.3915 -4.3062 -0.7868 13 1 7.6626 -3.0308 0.8379 14 1 5.5592 -4.0539 1.4769 15 7 2.0182 -0.6906 1.1961 16 6 2.1469 -0.0183 2.3571 17 8 1.8581 1.1583 2.4118 18 6 2.6497 -0.7286 3.5875 19 6 2.6997 0.2395 4.7413 20 6 2.0969 0.0707 5.9389 21 7 2.3883 1.1717 6.6969 22 6 2.0485 1.5330 7.9698 23 6 2.4799 2.7029 8.4905 24 9 2.1349 3.0466 9.7506 25 6 3.2854 3.5647 7.7251 26 6 3.6298 3.2153 6.4566 27 6 3.1723 1.9916 5.9283 28 7 3.3516 1.4043 4.7529 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 4.5996 0.9474 -0.9807 35 1 5.2420 -0.2024 -2.1781 36 1 3.7823 0.7463 -2.5492 37 1 6.8950 -0.6073 0.2855 38 1 2.2490 -1.6318 1.1526 39 1 1.9773 -1.5509 3.8325 40 1 3.6490 -1.1205 3.3980 41 1 1.4974 -0.7753 6.2411 42 1 1.4297 0.8780 8.5650 43 1 3.6291 4.4996 8.1425 44 1 4.2483 3.8694 5.8599 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275615877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:23 Heat of formation + Delta-G solvation = 38.721574 kcal Electronic energy + Delta-G solvation = -28601.435218 eV Core-core repulsion = 24470.918934 eV Total energy + Delta-G solvation = -4130.516284 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -49.33252 -42.85211 -39.00911 -37.30692 -36.13782 -33.90896 -33.76084 -31.91786 -31.06583 -29.91250 -29.12788 -27.50970 -26.10441 -25.55073 -23.84271 -22.85425 -22.06222 -21.11615 -19.94854 -19.45769 -18.45596 -17.77909 -16.89295 -16.51733 -16.49395 -16.05706 -15.39313 -15.35357 -15.22982 -14.85297 -14.70646 -14.39638 -13.93650 -13.72957 -13.51922 -13.23783 -12.95895 -12.87961 -12.59320 -12.22253 -12.04260 -11.87447 -11.57619 -11.36102 -11.27419 -11.19208 -11.13176 -10.81366 -10.68200 -10.33670 -10.17373 -10.03360 -9.92503 -9.78301 -9.07456 -8.60654 -8.52775 -8.11150 -7.99529 -6.73150 -5.69127 -3.15281 0.42546 1.01172 2.33275 2.70337 3.34367 3.37887 3.42662 3.44384 3.47653 3.77190 4.01736 4.07503 4.22948 4.48860 4.50560 4.67112 5.04557 5.19815 5.29325 5.39725 5.48555 5.53483 5.59909 5.66927 5.68105 5.75421 5.80001 5.97934 6.00530 6.06898 6.23393 6.24696 6.32258 6.50768 6.55923 6.62854 6.81212 6.91788 6.97845 7.42783 7.45131 7.74135 7.85713 7.95114 8.40446 8.45833 9.13260 9.24718 9.88997 10.39485 11.34896 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.003046 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.284980 B = 9190.288178 C =10085.793876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.258 4.258 8 H 0.066 0.934 9 C 0.008 3.992 10 N -0.896 5.896 11 Si 0.897 3.103 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.283 1.283 15 N -0.691 5.691 16 C 0.522 3.478 17 O -0.544 6.544 18 C -0.066 4.066 19 C 0.096 3.904 20 C -0.087 4.087 21 N -0.354 5.354 22 C 0.019 3.981 23 C 0.078 3.922 24 F -0.125 7.125 25 C -0.147 4.147 26 C -0.031 4.031 27 C 0.202 3.798 28 N -0.437 5.437 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.028 0.972 35 H 0.044 0.956 36 H -0.006 1.006 37 H 0.253 0.747 38 H 0.402 0.598 39 H 0.103 0.897 40 H 0.115 0.885 41 H 0.186 0.814 42 H 0.170 0.830 43 H 0.153 0.847 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.309 2.468 14.393 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.093 0.907 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.020 3.980 7 C -0.388 4.388 8 H 0.083 0.917 9 C -0.192 4.192 10 N -0.540 5.540 11 Si 0.727 3.273 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.209 1.209 15 N -0.341 5.341 16 C 0.307 3.693 17 O -0.422 6.422 18 C -0.107 4.107 19 C -0.038 4.038 20 C -0.218 4.218 21 N -0.026 5.026 22 C -0.105 4.105 23 C 0.055 3.945 24 F -0.104 7.104 25 C -0.171 4.171 26 C -0.051 4.051 27 C -0.041 4.041 28 N -0.155 5.155 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.013 0.987 37 H 0.063 0.937 38 H 0.238 0.762 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.203 0.797 42 H 0.187 0.813 43 H 0.171 0.829 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.883 3.624 13.830 16.832 hybrid contribution 0.207 -1.543 1.354 2.063 sum -8.676 2.081 15.184 17.611 Atomic orbital electron populations 1.22153 0.97203 1.01048 1.01356 1.21751 0.91500 0.98395 0.87090 0.90705 1.21176 0.85990 0.97779 0.93648 1.43874 0.98879 1.22616 1.66657 1.20794 0.92933 0.90487 0.93809 1.19011 0.96984 0.89457 1.33323 0.91665 1.24997 0.98628 0.96044 0.99522 1.70059 1.13213 1.21571 1.49195 0.86476 0.79386 0.83038 0.78391 1.21219 1.21749 1.20949 1.45649 1.65731 1.14220 1.08485 1.19959 0.77776 0.87191 0.84370 1.90657 1.50544 1.15701 1.85290 1.20056 1.04824 0.95774 0.90019 1.20253 0.96461 0.93695 0.93438 1.22370 1.12317 0.93880 0.93250 1.42467 1.34030 1.16245 1.09879 1.21112 1.04718 0.98483 0.86205 1.16570 1.01685 0.94733 0.81490 1.91538 1.90787 1.91914 1.36176 1.21004 1.00487 1.01250 0.94322 1.20216 0.98132 0.92455 0.94320 1.21105 0.98824 0.95381 0.88764 1.70804 1.22251 1.07046 1.15422 0.93109 0.92483 0.93125 0.93447 0.93176 0.95373 0.93692 0.98706 0.93687 0.76235 0.87908 0.86680 0.79734 0.81261 0.82941 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 37.16 0.35 -2.09 16 2 C 0.12 2.29 2.88 -67.93 -0.20 2.10 16 3 H 0.07 1.68 7.58 -51.93 -0.39 1.29 16 4 C 0.14 2.76 5.36 -4.04 -0.02 2.74 16 5 N -0.60 -14.31 2.82 -181.11 -0.51 -14.82 16 6 C 0.16 4.08 9.01 59.85 0.54 4.62 16 7 C -0.26 -6.50 8.02 -15.06 -0.12 -6.62 16 8 H 0.07 1.57 7.84 -52.49 -0.41 1.16 16 9 C 0.01 0.20 5.13 -17.43 -0.09 0.11 16 10 N -0.90 -25.54 10.57 55.49 0.59 -24.96 16 11 Si 0.90 20.79 29.57 -169.99 -5.03 15.76 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 N -0.69 -13.22 4.49 -53.81 -0.24 -13.46 16 16 C 0.52 10.46 7.79 -10.98 -0.09 10.37 16 17 O -0.54 -12.84 15.23 5.56 0.08 -12.76 16 18 C -0.07 -1.07 6.26 -29.03 -0.18 -1.25 16 19 C 0.10 1.62 5.84 -82.98 -0.48 1.14 16 20 C -0.09 -1.15 11.63 -16.44 -0.19 -1.34 16 21 N -0.35 -4.70 2.95 -62.59 -0.18 -4.88 16 22 C 0.02 0.19 10.92 -16.53 -0.18 0.01 16 23 C 0.08 0.76 7.25 -39.79 -0.29 0.48 16 24 F -0.13 -1.18 17.26 2.25 0.04 -1.14 16 25 C -0.15 -1.39 10.05 -39.49 -0.40 -1.79 16 26 C -0.03 -0.37 10.10 -39.37 -0.40 -0.77 16 27 C 0.20 3.17 7.81 -156.05 -1.22 1.95 16 28 N -0.44 -8.44 10.69 -9.01 -0.10 -8.54 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 33 H 0.05 0.90 7.86 -51.93 -0.41 0.49 16 34 H 0.03 0.78 7.44 -51.93 -0.39 0.39 16 35 H 0.04 1.19 7.15 -51.93 -0.37 0.82 16 36 H -0.01 -0.12 7.85 -51.93 -0.41 -0.53 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.40 7.40 7.40 -40.82 -0.30 7.10 16 39 H 0.10 1.20 8.10 -51.92 -0.42 0.78 16 40 H 0.12 1.98 8.14 -51.93 -0.42 1.55 16 41 H 0.19 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 43 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -34.42 374.78 -8.70 -43.11 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.04 Total: 6.40 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -2.96 Total: 9.64 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: -0.45 Total: -66.66 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.42 -8.70 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275615877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.834 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds