Wall clock time and date at job start Tue Mar 31 2020 19:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.46817 * 2 1 4 4 C 1.52999 * 109.47176 * 240.00060 * 2 1 3 5 5 N 1.46503 * 109.46934 * 185.00018 * 4 2 1 6 6 C 1.46504 * 120.00066 * 269.99928 * 5 4 2 7 7 C 1.36937 * 119.99855 * 89.99987 * 5 4 2 8 8 H 1.07994 * 120.00255 * 22.02981 * 7 5 4 9 9 C 1.38815 * 119.99617 * 202.02350 * 7 5 4 10 10 N 1.31614 * 120.00444 * 11.44153 * 9 7 5 11 11 Si 1.86802 * 119.99708 * 191.43343 * 9 7 5 12 12 H 1.48505 * 109.46993 * 60.00560 * 11 9 7 13 13 H 1.48498 * 109.47098 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47238 * 300.00496 * 11 9 7 15 15 N 1.46496 * 109.46785 * 120.00156 * 2 1 3 16 16 C 1.34776 * 119.99878 * 274.99980 * 15 2 1 17 17 O 1.21277 * 120.00367 * 0.02562 * 16 15 2 18 18 C 1.50706 * 120.00113 * 180.02562 * 16 15 2 19 19 C 1.50695 * 109.47315 * 180.02562 * 18 16 15 20 20 C 1.35129 * 125.69722 * 124.99646 * 19 18 16 21 21 N 1.36808 * 107.18734 * 180.02562 * 20 19 18 22 22 C 1.36610 * 132.54157 * 179.97438 * 21 20 19 23 23 C 1.35125 * 120.57368 * 179.97438 * 22 21 20 24 24 F 1.35098 * 119.87871 * 179.97438 * 23 22 21 25 25 C 1.40620 * 120.24545 * 0.03927 * 23 22 21 26 26 C 1.36005 * 119.68842 * 359.97438 * 25 23 22 27 27 C 1.37023 * 107.01564 * 359.97438 * 21 20 19 28 28 N 1.32615 * 108.03106 * 359.74264 * 27 21 20 29 29 H 1.08991 * 109.47710 * 299.99929 * 1 2 3 30 30 H 1.09006 * 109.47267 * 60.00296 * 1 2 3 31 31 H 1.09005 * 109.47383 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47620 * 304.99878 * 4 2 1 33 33 H 1.09003 * 109.47361 * 65.00032 * 4 2 1 34 34 H 1.09003 * 109.46867 * 94.04233 * 6 5 4 35 35 H 1.08999 * 109.46925 * 214.04240 * 6 5 4 36 36 H 1.09004 * 109.47016 * 334.04264 * 6 5 4 37 37 H 0.96995 * 120.00216 * 179.97438 * 10 9 7 38 38 H 0.97000 * 120.00483 * 95.00931 * 15 2 1 39 39 H 1.09007 * 109.46516 * 299.99767 * 18 16 15 40 40 H 1.08998 * 109.47464 * 59.99395 * 18 16 15 41 41 H 1.08007 * 126.40306 * 0.03378 * 20 19 18 42 42 H 1.07997 * 119.71525 * 359.97438 * 22 21 20 43 43 H 1.08002 * 120.15722 * 179.97438 * 25 23 22 44 44 H 1.08001 * 120.31170 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5001 -0.8263 -1.1905 6 6 4.3344 0.2341 -1.7612 7 6 4.0849 -1.9158 -0.6022 8 1 3.5321 -2.8383 -0.5041 9 6 5.3885 -1.8344 -0.1321 10 7 5.9843 -0.6642 -0.0434 11 14 6.2971 -3.3859 0.3749 12 1 6.3915 -4.3062 -0.7868 13 1 7.6626 -3.0308 0.8379 14 1 5.5592 -4.0539 1.4769 15 7 2.0182 -0.6906 1.1961 16 6 2.1469 -0.0183 2.3571 17 8 1.8581 1.1583 2.4118 18 6 2.6497 -0.7286 3.5875 19 6 2.6997 0.2395 4.7413 20 6 2.0969 0.0707 5.9389 21 7 2.3883 1.1717 6.6969 22 6 2.0485 1.5330 7.9698 23 6 2.4799 2.7029 8.4905 24 9 2.1349 3.0466 9.7506 25 6 3.2854 3.5647 7.7251 26 6 3.6298 3.2153 6.4566 27 6 3.1723 1.9916 5.9283 28 7 3.3516 1.4043 4.7529 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1370 34 1 4.5996 0.9474 -0.9807 35 1 5.2420 -0.2024 -2.1781 36 1 3.7823 0.7463 -2.5492 37 1 6.8950 -0.6073 0.2855 38 1 2.2490 -1.6318 1.1526 39 1 1.9773 -1.5509 3.8325 40 1 3.6490 -1.1205 3.3980 41 1 1.4974 -0.7753 6.2411 42 1 1.4297 0.8780 8.5650 43 1 3.6291 4.4996 8.1425 44 1 4.2483 3.8694 5.8599 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275615877.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:43:22 Heat of formation + Delta-G solvation = 17.137084 kcal Electronic energy + Delta-G solvation = -28602.371192 eV Core-core repulsion = 24470.918934 eV Total energy + Delta-G solvation = -4131.452257 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 14.61 seconds Orbital eigenvalues (eV) -50.09529 -43.85896 -40.54346 -38.37316 -37.79227 -35.60362 -34.77802 -33.37314 -32.72321 -31.36387 -30.10246 -28.60811 -28.00763 -27.32113 -24.76618 -23.81780 -23.66746 -22.59337 -21.36710 -20.96289 -19.38864 -18.70194 -18.65730 -17.88550 -17.41004 -17.20894 -16.93997 -16.61263 -16.30047 -16.10476 -15.94122 -15.56846 -15.46957 -15.05335 -14.80751 -14.65078 -14.38269 -14.31925 -13.98654 -13.69771 -13.50322 -13.04749 -12.96648 -12.79101 -12.65518 -12.62957 -12.51767 -12.34214 -12.12114 -12.07073 -11.95684 -11.89473 -11.62694 -11.06395 -10.62368 -10.53703 -9.70632 -9.62209 -8.95625 -8.72028 -7.71723 -5.19341 -0.42429 0.09972 1.41899 1.50818 1.54629 1.60247 1.68500 1.94289 2.34078 2.57333 2.69968 2.91607 3.12294 3.35383 3.44108 3.74158 3.75924 3.81562 4.00324 4.11991 4.24040 4.32954 4.42854 4.51786 4.56674 4.61184 4.69416 4.77594 4.79274 4.81767 4.86913 4.91929 4.95725 5.04706 5.23430 5.35427 5.39120 5.44844 5.52080 5.70281 5.76611 5.91261 5.99650 6.39413 6.89024 6.93308 7.21741 7.61191 7.94838 8.41948 9.32021 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.003046 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.284980 B = 9190.288178 C =10085.793876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.124 3.876 3 H 0.029 0.971 4 C 0.142 3.858 5 N -0.612 5.612 6 C 0.180 3.820 7 C -0.247 4.247 8 H 0.085 0.915 9 C -0.050 4.050 10 N -0.937 5.937 11 Si 0.957 3.043 12 H -0.282 1.282 13 H -0.311 1.311 14 H -0.262 1.262 15 N -0.689 5.689 16 C 0.513 3.487 17 O -0.588 6.588 18 C -0.056 4.056 19 C 0.052 3.948 20 C -0.068 4.068 21 N -0.356 5.356 22 C 0.022 3.978 23 C 0.076 3.924 24 F -0.118 7.118 25 C -0.118 4.118 26 C -0.063 4.063 27 C 0.183 3.817 28 N -0.509 5.509 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.069 0.931 34 H -0.013 1.013 35 H 0.020 0.980 36 H 0.025 0.975 37 H 0.240 0.760 38 H 0.407 0.593 39 H 0.151 0.849 40 H 0.097 0.903 41 H 0.232 0.768 42 H 0.208 0.792 43 H 0.186 0.814 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 0.597 16.273 20.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.016 3.984 3 H 0.048 0.952 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.035 3.965 7 C -0.377 4.377 8 H 0.103 0.897 9 C -0.245 4.245 10 N -0.584 5.584 11 Si 0.786 3.214 12 H -0.208 1.208 13 H -0.238 1.238 14 H -0.187 1.187 15 N -0.339 5.339 16 C 0.299 3.701 17 O -0.468 6.468 18 C -0.097 4.097 19 C -0.080 4.080 20 C -0.199 4.199 21 N -0.028 5.028 22 C -0.101 4.101 23 C 0.054 3.946 24 F -0.097 7.097 25 C -0.142 4.142 26 C -0.083 4.083 27 C -0.061 4.061 28 N -0.229 5.229 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.006 0.994 35 H 0.039 0.961 36 H 0.043 0.957 37 H 0.049 0.951 38 H 0.243 0.757 39 H 0.169 0.831 40 H 0.115 0.885 41 H 0.248 0.752 42 H 0.225 0.775 43 H 0.203 0.797 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.431 1.703 15.704 19.498 hybrid contribution 0.906 -0.857 0.830 1.498 sum -10.525 0.846 16.533 19.618 Atomic orbital electron populations 1.21998 0.93853 1.02731 1.01639 1.21615 0.93988 0.95792 0.87019 0.95238 1.21383 0.83235 0.99467 0.94386 1.44127 1.00854 1.21990 1.66453 1.20468 0.92828 0.90035 0.93201 1.19435 0.96800 0.90321 1.31118 0.89737 1.25712 0.99846 0.98289 1.00608 1.70288 1.12760 1.23832 1.51529 0.85493 0.77355 0.79968 0.78556 1.20799 1.23806 1.18723 1.45701 1.65434 1.14317 1.08439 1.20681 0.76956 0.86876 0.85554 1.90626 1.52463 1.17677 1.86076 1.20047 1.04568 0.96669 0.88400 1.20492 0.98521 0.93868 0.95149 1.22900 1.10843 0.94407 0.91763 1.42614 1.33588 1.15913 1.10732 1.21709 1.04258 0.99110 0.85021 1.16642 1.01490 0.94766 0.81694 1.91567 1.90674 1.91827 1.35637 1.21356 0.98158 1.01844 0.92850 1.20384 1.00043 0.92143 0.95744 1.21481 0.99485 0.96576 0.88559 1.70662 1.24952 1.09122 1.18127 0.94538 0.90530 0.90603 0.90955 0.91303 0.99449 0.96109 0.95693 0.95083 0.75686 0.83117 0.88461 0.75190 0.77505 0.79686 0.81660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.48 71.98 0.68 -3.48 16 2 C 0.12 4.67 2.88 44.99 0.13 4.80 16 3 H 0.03 1.38 7.58 -2.39 -0.02 1.36 16 4 C 0.14 5.26 5.36 86.38 0.46 5.73 16 5 N -0.61 -29.17 2.82 -726.91 -2.05 -31.22 16 6 C 0.18 9.20 9.01 127.77 1.15 10.35 16 7 C -0.25 -12.28 8.02 84.03 0.67 -11.61 16 8 H 0.09 3.85 7.84 -2.91 -0.02 3.83 16 9 C -0.05 -2.65 5.13 84.86 0.44 -2.22 16 10 N -0.94 -55.94 10.57 21.65 0.23 -55.71 16 11 Si 0.96 43.10 29.57 68.60 2.03 45.13 16 12 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 13 H -0.31 -14.88 7.11 99.48 0.71 -14.18 16 14 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 15 N -0.69 -26.38 4.49 -442.55 -1.99 -28.37 16 16 C 0.51 21.14 7.79 87.66 0.68 21.82 16 17 O -0.59 -29.25 15.23 -3.02 -0.05 -29.30 16 18 C -0.06 -1.85 6.26 29.10 0.18 -1.67 16 19 C 0.05 1.81 5.84 41.59 0.24 2.05 16 20 C -0.07 -1.69 11.63 83.20 0.97 -0.73 16 21 N -0.36 -9.01 2.95 -351.93 -1.04 -10.04 16 22 C 0.02 0.38 10.92 83.23 0.91 1.29 16 23 C 0.08 1.29 7.25 22.13 0.16 1.45 16 24 F -0.12 -1.83 17.26 44.97 0.78 -1.05 16 25 C -0.12 -2.02 10.05 22.33 0.22 -1.80 16 26 C -0.06 -1.54 10.10 22.41 0.23 -1.31 16 27 C 0.18 5.89 7.81 134.10 1.05 6.94 16 28 N -0.51 -20.85 10.69 -182.42 -1.95 -22.80 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.07 2.37 8.03 -2.39 -0.02 2.35 16 33 H 0.07 2.31 7.86 -2.39 -0.02 2.29 16 34 H -0.01 -0.76 7.44 -2.39 -0.02 -0.78 16 35 H 0.02 1.12 7.15 -2.39 -0.02 1.10 16 36 H 0.02 1.09 7.85 -2.39 -0.02 1.07 16 37 H 0.24 14.36 8.31 -92.71 -0.77 13.59 16 38 H 0.41 14.55 7.40 -92.71 -0.69 13.86 16 39 H 0.15 3.22 8.10 -2.38 -0.02 3.20 16 40 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.23 3.18 8.06 -2.91 -0.02 3.16 16 42 H 0.21 1.88 8.06 -2.91 -0.02 1.85 16 43 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 44 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -81.47 374.78 4.48 -76.99 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.34 Total: 24.74 kcal Atomic # 6 Polarization: 23.45 SS G_CDS: 8.18 Total: 31.63 kcal Atomic # 7 Polarization: -141.34 SS G_CDS: -6.79 Total: -148.13 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -0.05 Total: -29.30 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.78 Total: -1.05 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -81.47 4.48 -76.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275615877.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.125 kcal (2) G-P(sol) polarization free energy of solvation -81.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.61 seconds