Wall clock time and date at job start Tue Mar 31 2020 19:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46843 * 2 1 4 4 C 1.53000 * 109.47064 * 119.99919 * 2 1 3 5 5 N 1.46506 * 109.46982 * 174.99599 * 4 2 1 6 6 C 1.46490 * 120.00427 * 270.00605 * 5 4 2 7 7 C 1.36937 * 119.99211 * 90.00146 * 5 4 2 8 8 H 1.08002 * 120.00496 * 23.61773 * 7 5 4 9 9 C 1.38810 * 119.99994 * 203.61143 * 7 5 4 10 10 N 1.31629 * 119.99710 * 11.32992 * 9 7 5 11 11 Si 1.86802 * 120.00391 * 191.32379 * 9 7 5 12 12 H 1.48498 * 109.46818 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47075 * 120.00292 * 11 9 7 14 14 H 1.48500 * 109.47137 * 240.00002 * 11 9 7 15 15 N 1.46494 * 109.46906 * 240.00114 * 2 1 3 16 16 C 1.34778 * 119.99963 * 85.00447 * 15 2 1 17 17 O 1.21283 * 120.00244 * 359.97438 * 16 15 2 18 18 C 1.50699 * 120.00193 * 180.02562 * 16 15 2 19 19 C 1.50695 * 109.47515 * 179.97438 * 18 16 15 20 20 C 1.35125 * 125.69618 * 124.99597 * 19 18 16 21 21 N 1.36820 * 107.18624 * 180.02562 * 20 19 18 22 22 C 1.36603 * 132.54265 * 179.97438 * 21 20 19 23 23 C 1.35126 * 120.57081 * 180.29898 * 22 21 20 24 24 F 1.35103 * 119.87632 * 179.72609 * 23 22 21 25 25 C 1.40611 * 120.25034 * 359.43517 * 23 22 21 26 26 C 1.36013 * 119.68454 * 0.59445 * 25 23 22 27 27 C 1.37029 * 107.01122 * 0.02562 * 21 20 19 28 28 N 1.32609 * 108.03627 * 0.02562 * 27 21 20 29 29 H 1.09004 * 109.46678 * 299.99673 * 1 2 3 30 30 H 1.08993 * 109.46852 * 59.99681 * 1 2 3 31 31 H 1.08998 * 109.46843 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47565 * 295.00042 * 4 2 1 33 33 H 1.09000 * 109.46894 * 55.00591 * 4 2 1 34 34 H 1.08994 * 109.47560 * 94.53169 * 6 5 4 35 35 H 1.09006 * 109.47045 * 214.53182 * 6 5 4 36 36 H 1.09006 * 109.47060 * 334.52812 * 6 5 4 37 37 H 0.97000 * 119.99709 * 180.02562 * 10 9 7 38 38 H 0.96998 * 120.00127 * 264.99652 * 15 2 1 39 39 H 1.08998 * 109.47353 * 59.99175 * 18 16 15 40 40 H 1.09001 * 109.46777 * 299.99208 * 18 16 15 41 41 H 1.08000 * 126.40713 * 0.02562 * 20 19 18 42 42 H 1.08003 * 119.71447 * 0.02562 * 22 21 20 43 43 H 1.08001 * 120.16303 * 180.26548 * 25 23 22 44 44 H 1.07999 * 120.31361 * 179.71793 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5002 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.2799 0.1648 1.7240 8 1 3.8834 0.8070 2.4965 9 6 5.5800 0.3442 1.2719 10 7 5.9919 -0.2793 0.1883 11 14 6.7450 1.4706 2.2011 12 1 6.0439 2.0471 3.3763 13 1 7.9237 0.6931 2.6608 14 1 7.1938 2.5665 1.3051 15 7 2.0183 -0.6906 -1.1961 16 6 2.1471 -0.0182 -2.3571 17 8 1.8583 1.1585 -2.4117 18 6 2.6488 -0.7286 -3.5877 19 6 2.6991 0.2396 -4.7414 20 6 3.7847 0.5055 -5.5008 21 7 3.4089 1.4347 -6.4320 22 6 4.0872 2.0582 -7.4406 23 6 3.4662 2.9616 -8.2307 24 9 4.1520 3.5740 -9.2206 25 6 2.1072 3.2621 -8.0304 26 6 1.4221 2.6479 -7.0287 27 6 2.0857 1.7128 -6.2095 28 7 1.6791 0.9792 -5.1824 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -0.1584 2.1370 33 1 1.6055 -1.7198 1.2951 34 1 4.3533 -1.7642 -0.4802 35 1 5.0473 -2.2387 1.0886 36 1 3.4427 -2.8401 0.6068 37 1 6.9005 -0.1542 -0.1274 38 1 2.2491 -1.6317 -1.1526 39 1 1.9760 -1.5504 -3.8326 40 1 3.6480 -1.1211 -3.3986 41 1 4.7656 0.0665 -5.3929 42 1 5.1301 1.8305 -7.6051 43 1 1.6111 3.9811 -8.6654 44 1 0.3792 2.8744 -6.8630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275615879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:06 Heat of formation + Delta-G solvation = 37.692627 kcal Electronic energy + Delta-G solvation = -28485.724451 eV Core-core repulsion = 24355.163549 eV Total energy + Delta-G solvation = -4130.560902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.32541 -42.87935 -39.10453 -37.34147 -36.18864 -33.95272 -33.80520 -31.97155 -31.02366 -30.05104 -29.15516 -27.57571 -26.14187 -25.56148 -23.87011 -22.88292 -22.10936 -21.09154 -20.04515 -19.58308 -18.46631 -17.80789 -16.77491 -16.73669 -16.50155 -16.17513 -15.45043 -15.32221 -15.24583 -14.84743 -14.74863 -14.36945 -13.96494 -13.72883 -13.45415 -13.41006 -13.19275 -12.93695 -12.56758 -12.12409 -12.07228 -11.90269 -11.72502 -11.38363 -11.27047 -11.22023 -11.02132 -10.83243 -10.74001 -10.50825 -10.15694 -10.04648 -9.92001 -9.83830 -9.14958 -8.65268 -8.56174 -8.22055 -8.01024 -6.72101 -5.72415 -3.17402 0.40160 0.99418 2.31390 2.67821 3.29850 3.38513 3.43223 3.46402 3.47761 3.76425 3.94960 3.99641 4.18685 4.48245 4.52046 4.66226 5.02174 5.19743 5.27626 5.37139 5.47400 5.52020 5.55152 5.59873 5.64880 5.71142 5.78172 5.86378 5.95977 6.08488 6.17074 6.22598 6.32947 6.52462 6.54559 6.61316 6.69871 6.89365 6.97540 7.29752 7.36439 7.66758 7.82127 7.86713 8.28505 8.40764 9.02326 9.24778 9.87063 10.35391 11.32940 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.003026 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.079498 B = 9251.038953 C =10547.726016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.120 3.880 3 H 0.083 0.917 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.162 3.838 7 C -0.252 4.252 8 H 0.067 0.933 9 C 0.005 3.995 10 N -0.905 5.905 11 Si 0.902 3.098 12 H -0.278 1.278 13 H -0.290 1.290 14 H -0.291 1.291 15 N -0.702 5.702 16 C 0.522 3.478 17 O -0.534 6.534 18 C -0.064 4.064 19 C 0.091 3.909 20 C -0.076 4.076 21 N -0.353 5.353 22 C 0.022 3.978 23 C 0.077 3.923 24 F -0.125 7.125 25 C -0.144 4.144 26 C -0.035 4.035 27 C 0.201 3.799 28 N -0.446 5.446 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.031 0.969 35 H 0.042 0.958 36 H -0.005 1.005 37 H 0.249 0.751 38 H 0.393 0.607 39 H 0.104 0.896 40 H 0.112 0.888 41 H 0.188 0.812 42 H 0.172 0.828 43 H 0.153 0.847 44 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -0.989 -15.996 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.013 3.987 3 H 0.101 0.899 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.017 3.983 7 C -0.382 4.382 8 H 0.085 0.915 9 C -0.194 4.194 10 N -0.551 5.551 11 Si 0.732 3.268 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.219 1.219 15 N -0.352 5.352 16 C 0.307 3.693 17 O -0.410 6.410 18 C -0.105 4.105 19 C -0.043 4.043 20 C -0.207 4.207 21 N -0.026 5.026 22 C -0.101 4.101 23 C 0.054 3.946 24 F -0.103 7.103 25 C -0.168 4.168 26 C -0.055 4.055 27 C -0.041 4.041 28 N -0.165 5.165 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.013 0.987 37 H 0.059 0.941 38 H 0.227 0.773 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.205 0.795 42 H 0.189 0.811 43 H 0.171 0.829 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.958 -0.166 -15.750 17.647 hybrid contribution 2.071 0.400 -0.133 2.114 sum -5.886 0.234 -15.883 16.940 Atomic orbital electron populations 1.22150 0.97060 1.00958 1.01610 1.21777 0.91531 0.99031 0.86376 0.89908 1.21200 0.85724 0.97196 0.94439 1.43888 0.99102 1.20845 1.68144 1.20838 0.94522 0.85062 0.97843 1.19221 0.94514 1.10388 1.14043 0.91475 1.24993 0.98880 0.99083 0.96398 1.70042 1.16988 1.45852 1.22184 0.86219 0.81064 0.80268 0.79212 1.20350 1.21727 1.21856 1.45721 1.66752 1.13532 1.09205 1.19983 0.77864 0.87362 0.84119 1.90687 1.49728 1.15770 1.84865 1.20048 1.04538 0.96288 0.89583 1.20183 0.89016 0.98277 0.96840 1.22494 1.02323 1.00208 0.95681 1.42438 1.11208 1.27796 1.21110 1.21170 0.99433 0.98103 0.91429 1.16563 0.90888 0.96951 0.90193 1.91545 1.79337 1.81078 1.58389 1.21009 0.92365 1.02955 1.00453 1.20158 1.00929 0.92642 0.91794 1.21031 0.81822 1.02661 0.98620 1.70684 1.29561 1.08512 1.07770 0.92355 0.92878 0.93296 0.92464 0.94050 0.95039 0.93950 0.98669 0.94054 0.77289 0.87743 0.86937 0.79472 0.81096 0.82946 0.82138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.48 37.16 0.35 -2.15 16 2 C 0.12 2.30 2.88 -67.93 -0.20 2.10 16 3 H 0.08 1.94 7.58 -51.93 -0.39 1.55 16 4 C 0.14 2.77 5.33 -4.04 -0.02 2.75 16 5 N -0.60 -14.21 2.78 -181.12 -0.50 -14.72 16 6 C 0.16 3.65 7.61 59.84 0.46 4.11 16 7 C -0.25 -6.81 9.66 -15.06 -0.15 -6.96 16 8 H 0.07 1.81 7.85 -52.49 -0.41 1.40 16 9 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 10 N -0.91 -25.53 10.66 55.49 0.59 -24.94 16 11 Si 0.90 22.04 29.57 -169.99 -5.03 17.02 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 N -0.70 -12.74 4.41 -53.81 -0.24 -12.98 16 16 C 0.52 10.09 7.78 -10.99 -0.09 10.01 16 17 O -0.53 -12.59 15.22 5.55 0.08 -12.50 16 18 C -0.06 -0.95 6.26 -29.04 -0.18 -1.13 16 19 C 0.09 1.47 5.85 -82.98 -0.49 0.98 16 20 C -0.08 -1.06 11.63 -16.43 -0.19 -1.25 16 21 N -0.35 -4.75 2.95 -62.59 -0.18 -4.93 16 22 C 0.02 0.24 10.92 -16.53 -0.18 0.05 16 23 C 0.08 0.76 7.25 -39.79 -0.29 0.47 16 24 F -0.12 -1.20 17.26 2.25 0.04 -1.17 16 25 C -0.14 -1.30 10.05 -39.49 -0.40 -1.70 16 26 C -0.04 -0.39 10.10 -39.37 -0.40 -0.78 16 27 C 0.20 2.99 7.81 -156.05 -1.22 1.77 16 28 N -0.45 -7.82 10.66 -9.01 -0.10 -7.92 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.10 8.03 -51.93 -0.42 0.68 16 33 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 34 H 0.03 0.74 6.90 -51.93 -0.36 0.38 16 35 H 0.04 1.06 7.30 -51.93 -0.38 0.68 16 36 H -0.01 -0.10 7.84 -51.93 -0.41 -0.51 16 37 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.39 6.37 7.17 -40.82 -0.29 6.08 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.11 1.51 8.10 -51.93 -0.42 1.09 16 41 H 0.19 2.02 8.06 -52.49 -0.42 1.60 16 42 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -35.11 374.31 -8.77 -43.88 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.01 Total: 4.30 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -3.07 Total: 8.32 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -0.43 Total: -65.49 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.11 -8.77 -43.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275615879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.569 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds