Wall clock time and date at job start Tue Mar 31 2020 19:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46843 * 2 1 4 4 C 1.53000 * 109.47064 * 119.99919 * 2 1 3 5 5 N 1.46506 * 109.46982 * 174.99599 * 4 2 1 6 6 C 1.46490 * 120.00427 * 270.00605 * 5 4 2 7 7 C 1.36937 * 119.99211 * 90.00146 * 5 4 2 8 8 H 1.08002 * 120.00496 * 23.61773 * 7 5 4 9 9 C 1.38810 * 119.99994 * 203.61143 * 7 5 4 10 10 N 1.31629 * 119.99710 * 11.32992 * 9 7 5 11 11 Si 1.86802 * 120.00391 * 191.32379 * 9 7 5 12 12 H 1.48498 * 109.46818 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47075 * 120.00292 * 11 9 7 14 14 H 1.48500 * 109.47137 * 240.00002 * 11 9 7 15 15 N 1.46494 * 109.46906 * 240.00114 * 2 1 3 16 16 C 1.34778 * 119.99963 * 85.00447 * 15 2 1 17 17 O 1.21283 * 120.00244 * 359.97438 * 16 15 2 18 18 C 1.50699 * 120.00193 * 180.02562 * 16 15 2 19 19 C 1.50695 * 109.47515 * 179.97438 * 18 16 15 20 20 C 1.35125 * 125.69618 * 124.99597 * 19 18 16 21 21 N 1.36820 * 107.18624 * 180.02562 * 20 19 18 22 22 C 1.36603 * 132.54265 * 179.97438 * 21 20 19 23 23 C 1.35126 * 120.57081 * 180.29898 * 22 21 20 24 24 F 1.35103 * 119.87632 * 179.72609 * 23 22 21 25 25 C 1.40611 * 120.25034 * 359.43517 * 23 22 21 26 26 C 1.36013 * 119.68454 * 0.59445 * 25 23 22 27 27 C 1.37029 * 107.01122 * 0.02562 * 21 20 19 28 28 N 1.32609 * 108.03627 * 0.02562 * 27 21 20 29 29 H 1.09004 * 109.46678 * 299.99673 * 1 2 3 30 30 H 1.08993 * 109.46852 * 59.99681 * 1 2 3 31 31 H 1.08998 * 109.46843 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47565 * 295.00042 * 4 2 1 33 33 H 1.09000 * 109.46894 * 55.00591 * 4 2 1 34 34 H 1.08994 * 109.47560 * 94.53169 * 6 5 4 35 35 H 1.09006 * 109.47045 * 214.53182 * 6 5 4 36 36 H 1.09006 * 109.47060 * 334.52812 * 6 5 4 37 37 H 0.97000 * 119.99709 * 180.02562 * 10 9 7 38 38 H 0.96998 * 120.00127 * 264.99652 * 15 2 1 39 39 H 1.08998 * 109.47353 * 59.99175 * 18 16 15 40 40 H 1.09001 * 109.46777 * 299.99208 * 18 16 15 41 41 H 1.08000 * 126.40713 * 0.02562 * 20 19 18 42 42 H 1.08003 * 119.71447 * 0.02562 * 22 21 20 43 43 H 1.08001 * 120.16303 * 180.26548 * 25 23 22 44 44 H 1.07999 * 120.31361 * 179.71793 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5002 -0.8264 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.2799 0.1648 1.7240 8 1 3.8834 0.8070 2.4965 9 6 5.5800 0.3442 1.2719 10 7 5.9919 -0.2793 0.1883 11 14 6.7450 1.4706 2.2011 12 1 6.0439 2.0471 3.3763 13 1 7.9237 0.6931 2.6608 14 1 7.1938 2.5665 1.3051 15 7 2.0183 -0.6906 -1.1961 16 6 2.1471 -0.0182 -2.3571 17 8 1.8583 1.1585 -2.4117 18 6 2.6488 -0.7286 -3.5877 19 6 2.6991 0.2396 -4.7414 20 6 3.7847 0.5055 -5.5008 21 7 3.4089 1.4347 -6.4320 22 6 4.0872 2.0582 -7.4406 23 6 3.4662 2.9616 -8.2307 24 9 4.1520 3.5740 -9.2206 25 6 2.1072 3.2621 -8.0304 26 6 1.4221 2.6479 -7.0287 27 6 2.0857 1.7128 -6.2095 28 7 1.6791 0.9792 -5.1824 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -0.1584 2.1370 33 1 1.6055 -1.7198 1.2951 34 1 4.3533 -1.7642 -0.4802 35 1 5.0473 -2.2387 1.0886 36 1 3.4427 -2.8401 0.6068 37 1 6.9005 -0.1542 -0.1274 38 1 2.2491 -1.6317 -1.1526 39 1 1.9760 -1.5504 -3.8326 40 1 3.6480 -1.1211 -3.3986 41 1 4.7656 0.0665 -5.3929 42 1 5.1301 1.8305 -7.6051 43 1 1.6111 3.9811 -8.6654 44 1 0.3792 2.8744 -6.8630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275615879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:44:03 Heat of formation + Delta-G solvation = 16.144017 kcal Electronic energy + Delta-G solvation = -28486.658869 eV Core-core repulsion = 24355.163549 eV Total energy + Delta-G solvation = -4131.495320 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 3.74 seconds Orbital eigenvalues (eV) -50.11322 -43.86626 -40.59797 -38.38559 -37.80505 -35.65338 -34.77811 -33.35576 -32.73261 -31.48429 -30.10191 -28.64901 -27.91317 -27.36362 -24.78726 -23.82254 -23.67720 -22.55017 -21.49586 -20.99046 -19.38869 -18.77261 -18.65610 -18.00437 -17.38882 -17.21179 -17.02402 -16.66501 -16.23786 -16.15320 -15.92486 -15.58126 -15.35306 -15.25929 -14.81369 -14.75081 -14.41799 -14.36715 -13.84286 -13.68336 -13.49644 -13.13372 -12.98440 -12.82947 -12.66985 -12.61860 -12.49700 -12.36247 -12.22694 -12.06427 -11.99337 -11.79411 -11.65615 -11.14321 -10.68769 -10.59562 -9.79645 -9.64179 -8.96248 -8.66883 -7.79476 -5.24642 -0.43354 0.09092 1.38789 1.42396 1.45440 1.53345 1.65456 1.94528 2.32473 2.51086 2.62658 2.91603 3.08257 3.34320 3.34751 3.72935 3.76289 3.79819 4.00180 4.07492 4.24616 4.36303 4.45839 4.48335 4.54952 4.58761 4.66461 4.78322 4.80128 4.81259 4.90738 4.91172 4.96419 5.04457 5.25088 5.38770 5.42317 5.43397 5.50603 5.68888 5.82390 5.87929 5.96220 6.38481 6.81710 6.85327 7.22227 7.57017 7.94136 8.34360 9.22636 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012923 B = 0.003026 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.079498 B = 9251.038953 C =10547.726016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.126 3.874 3 H 0.029 0.971 4 C 0.143 3.857 5 N -0.611 5.611 6 C 0.173 3.827 7 C -0.259 4.259 8 H 0.062 0.938 9 C -0.046 4.046 10 N -0.925 5.925 11 Si 0.954 3.046 12 H -0.271 1.271 13 H -0.288 1.288 14 H -0.301 1.301 15 N -0.696 5.696 16 C 0.513 3.487 17 O -0.585 6.585 18 C -0.053 4.053 19 C 0.058 3.942 20 C -0.082 4.082 21 N -0.357 5.357 22 C 0.014 3.986 23 C 0.079 3.921 24 F -0.120 7.120 25 C -0.119 4.119 26 C -0.056 4.056 27 C 0.184 3.816 28 N -0.495 5.495 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.018 0.982 35 H 0.010 0.990 36 H 0.037 0.963 37 H 0.244 0.756 38 H 0.405 0.595 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.213 0.787 42 H 0.198 0.802 43 H 0.189 0.811 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.684 -1.491 -16.960 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.019 3.981 3 H 0.048 0.952 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.028 3.972 7 C -0.389 4.389 8 H 0.080 0.920 9 C -0.242 4.242 10 N -0.572 5.572 11 Si 0.784 3.216 12 H -0.195 1.195 13 H -0.214 1.214 14 H -0.229 1.229 15 N -0.347 5.347 16 C 0.299 3.701 17 O -0.465 6.465 18 C -0.094 4.094 19 C -0.075 4.075 20 C -0.213 4.213 21 N -0.029 5.029 22 C -0.109 4.109 23 C 0.056 3.944 24 F -0.098 7.098 25 C -0.143 4.143 26 C -0.076 4.076 27 C -0.059 4.059 28 N -0.215 5.215 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.036 0.964 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.241 0.759 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.230 0.770 42 H 0.215 0.785 43 H 0.206 0.794 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.438 -0.708 -16.696 18.721 hybrid contribution 2.181 0.629 0.093 2.272 sum -6.257 -0.080 -16.603 17.743 Atomic orbital electron populations 1.22004 0.94127 1.02745 1.01467 1.21561 0.93697 0.96167 0.86721 0.95216 1.21349 0.83372 0.99220 0.94409 1.44086 1.00773 1.20507 1.68013 1.20666 0.94248 0.85974 0.96297 1.19460 0.95088 1.10608 1.13784 0.92022 1.25606 1.00309 1.00819 0.97447 1.70167 1.16801 1.47037 1.23174 0.85388 0.79480 0.78491 0.78206 1.19535 1.21441 1.22928 1.45705 1.66258 1.13964 1.08729 1.20772 0.76937 0.86990 0.85368 1.90654 1.51956 1.18097 1.85760 1.20045 1.05620 0.96438 0.87263 1.20453 0.89810 0.99323 0.97870 1.22848 1.02744 1.00219 0.95459 1.42550 1.11047 1.27779 1.21540 1.21659 1.00654 0.97947 0.90674 1.16696 0.91268 0.96500 0.89900 1.91567 1.79303 1.80877 1.58086 1.21398 0.91837 1.01839 0.99249 1.20449 1.01974 0.92865 0.92310 1.21585 0.82777 1.02977 0.98577 1.70584 1.31005 1.10278 1.09604 0.90867 0.94685 0.90412 0.92267 0.90408 0.96424 0.97101 0.94422 0.94644 0.75923 0.84868 0.85560 0.76987 0.78480 0.79359 0.80546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 9.48 71.98 0.68 -3.69 16 2 C 0.13 4.80 2.88 45.00 0.13 4.93 16 3 H 0.03 1.45 7.58 -2.39 -0.02 1.43 16 4 C 0.14 5.34 5.33 86.38 0.46 5.80 16 5 N -0.61 -28.70 2.78 -726.95 -2.02 -30.72 16 6 C 0.17 7.62 7.61 127.77 0.97 8.59 16 7 C -0.26 -14.06 9.66 84.03 0.81 -13.25 16 8 H 0.06 3.35 7.85 -2.91 -0.02 3.33 16 9 C -0.05 -2.57 5.13 84.86 0.44 -2.14 16 10 N -0.93 -52.92 10.66 21.65 0.23 -52.69 16 11 Si 0.95 45.88 29.57 68.60 2.03 47.91 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 13 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 14 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 15 N -0.70 -25.04 4.41 -442.53 -1.95 -27.00 16 16 C 0.51 20.24 7.78 87.66 0.68 20.92 16 17 O -0.58 -28.87 15.22 -3.04 -0.05 -28.92 16 18 C -0.05 -1.59 6.26 29.10 0.18 -1.41 16 19 C 0.06 1.93 5.85 41.59 0.24 2.17 16 20 C -0.08 -2.27 11.63 83.20 0.97 -1.30 16 21 N -0.36 -9.47 2.95 -351.93 -1.04 -10.51 16 22 C 0.01 0.27 10.92 83.23 0.91 1.18 16 23 C 0.08 1.38 7.25 22.13 0.16 1.54 16 24 F -0.12 -1.99 17.26 44.97 0.78 -1.21 16 25 C -0.12 -1.88 10.05 22.33 0.22 -1.65 16 26 C -0.06 -1.19 10.10 22.41 0.23 -0.96 16 27 C 0.18 5.53 7.81 134.10 1.05 6.58 16 28 N -0.49 -17.94 10.66 -182.42 -1.95 -19.88 16 29 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 2.18 8.03 -2.39 -0.02 2.16 16 33 H 0.08 2.36 7.86 -2.39 -0.02 2.34 16 34 H 0.02 0.82 6.90 -2.39 -0.02 0.81 16 35 H 0.01 0.51 7.30 -2.38 -0.02 0.50 16 36 H 0.04 1.32 7.84 -2.38 -0.02 1.30 16 37 H 0.24 13.72 8.31 -92.71 -0.77 12.95 16 38 H 0.40 12.50 7.17 -92.71 -0.66 11.84 16 39 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.13 3.35 8.10 -2.39 -0.02 3.33 16 41 H 0.21 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.20 2.60 8.06 -2.91 -0.02 2.57 16 43 H 0.19 1.54 8.06 -2.91 -0.02 1.51 16 44 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -79.59 374.31 4.53 -75.06 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.36 Total: 20.64 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: 8.13 Total: 27.31 kcal Atomic # 7 Polarization: -134.07 SS G_CDS: -6.72 Total: -140.80 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.05 Total: -28.92 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.21 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -79.59 4.53 -75.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275615879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.207 kcal (2) G-P(sol) polarization free energy of solvation -79.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.74 seconds