Wall clock time and date at job start Tue Mar 31 2020 19:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47333 * 2 1 4 4 C 1.53001 * 109.46901 * 119.99878 * 2 1 3 5 5 N 1.46507 * 109.47163 * 175.00264 * 4 2 1 6 6 C 1.34774 * 119.99804 * 180.02562 * 5 4 2 7 7 O 1.21272 * 120.00568 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99607 * 179.97438 * 6 5 4 9 9 C 1.50705 * 109.47257 * 180.02562 * 8 6 5 10 10 C 1.35123 * 125.69656 * 124.99825 * 9 8 6 11 11 N 1.36804 * 107.18670 * 179.97438 * 10 9 8 12 12 C 1.36604 * 132.54262 * 179.97438 * 11 10 9 13 13 C 1.35140 * 120.57367 * 179.97438 * 12 11 10 14 14 F 1.35102 * 119.87812 * 180.02562 * 13 12 11 15 15 C 1.40614 * 120.24575 * 0.04137 * 13 12 11 16 16 C 1.36008 * 119.68627 * 359.97438 * 15 13 12 17 17 C 1.37029 * 107.01325 * 359.97438 * 11 10 9 18 18 N 1.32604 * 108.03404 * 359.75958 * 17 11 10 19 19 N 1.46499 * 109.47584 * 239.99546 * 2 1 3 20 20 C 1.46497 * 120.00331 * 300.00679 * 19 2 1 21 21 C 1.36935 * 120.00142 * 119.99562 * 19 2 1 22 22 H 1.08005 * 119.99455 * 22.83203 * 21 19 2 23 23 C 1.38810 * 120.00567 * 202.82774 * 21 19 2 24 24 N 1.31615 * 119.99868 * 11.58678 * 23 21 19 25 25 Si 1.86805 * 120.00209 * 191.59002 * 23 21 19 26 26 H 1.48503 * 109.47043 * 89.99721 * 25 23 21 27 27 H 1.48497 * 109.46811 * 209.99941 * 25 23 21 28 28 H 1.48501 * 109.46984 * 329.99685 * 25 23 21 29 29 H 1.09004 * 109.46654 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47304 * 300.00020 * 1 2 3 31 31 H 1.09001 * 109.46562 * 60.00616 * 1 2 3 32 32 H 1.08996 * 109.47281 * 55.00460 * 4 2 1 33 33 H 1.09001 * 109.47304 * 295.00064 * 4 2 1 34 34 H 0.97004 * 119.99926 * 359.97438 * 5 4 2 35 35 H 1.09006 * 109.47426 * 299.99416 * 8 6 5 36 36 H 1.08999 * 109.47431 * 59.99990 * 8 6 5 37 37 H 1.08002 * 126.40944 * 359.97438 * 10 9 8 38 38 H 1.07998 * 119.71591 * 0.02562 * 12 11 10 39 39 H 1.08002 * 120.15274 * 179.97438 * 15 13 12 40 40 H 1.08001 * 120.31247 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47603 * 93.84481 * 20 19 2 42 42 H 1.09000 * 109.47182 * 213.84831 * 20 19 2 43 43 H 1.09002 * 109.46552 * 333.84555 * 20 19 2 44 44 H 0.97001 * 120.00366 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1907 6 6 4.1729 -1.4291 2.1909 7 8 3.5698 -1.8849 3.1391 8 6 5.6748 -1.5377 2.1303 9 6 6.1771 -2.2492 3.3602 10 6 6.9568 -3.3527 3.3696 11 7 7.1850 -3.6753 4.6793 12 6 7.8947 -4.6803 5.2729 13 6 7.9610 -4.7726 6.6195 14 9 8.6674 -5.7720 7.1917 15 6 7.2972 -3.8324 7.4273 16 6 6.5874 -2.8277 6.8472 17 6 6.5286 -2.7449 5.4417 18 7 5.9314 -1.8903 4.6223 19 7 2.0184 -0.6907 -1.1961 20 6 1.6645 -2.0932 -1.4280 21 6 2.8057 -0.0252 -2.0975 22 1 3.3667 0.8436 -1.7864 23 6 2.8827 -0.4673 -3.4111 24 7 2.0368 -1.3747 -3.8507 25 14 4.1871 0.2255 -4.5548 26 1 5.4155 -0.6042 -4.4650 27 1 3.6803 0.2101 -5.9505 28 1 4.5025 1.6213 -4.1580 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9824 -0.4628 0.4317 35 1 5.9629 -2.1007 1.2424 36 1 6.1098 -0.5394 2.0845 37 1 7.3301 -3.8812 2.5049 38 1 8.4080 -5.4070 4.6607 39 1 7.3508 -3.9078 8.5034 40 1 6.0740 -2.0998 7.4580 41 1 0.7758 -2.1446 -2.0569 42 1 2.4917 -2.5991 -1.9258 43 1 1.4628 -2.5795 -0.4735 44 1 2.0909 -1.6840 -4.7685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275887677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:14 Heat of formation + Delta-G solvation = 36.902907 kcal Electronic energy + Delta-G solvation = -27883.890376 eV Core-core repulsion = 23753.295229 eV Total energy + Delta-G solvation = -4130.595147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 20.53 seconds Orbital eigenvalues (eV) -49.44612 -43.03347 -39.21537 -37.46803 -36.59686 -34.00825 -33.65819 -32.21473 -31.59370 -29.42527 -29.26141 -28.06938 -26.02268 -25.40699 -23.87802 -23.03098 -23.00179 -21.22461 -19.77915 -19.22025 -18.57956 -17.93671 -16.97516 -16.78712 -16.64944 -16.26689 -15.53069 -15.48281 -15.37369 -15.31453 -14.91036 -14.58968 -14.05532 -14.00788 -13.63586 -13.43298 -13.04428 -12.78962 -12.64048 -12.38972 -12.17739 -12.02588 -11.77964 -11.45100 -11.38213 -11.35060 -11.04132 -10.83799 -10.74198 -10.40174 -10.26728 -10.19119 -9.89606 -9.77404 -9.40607 -8.80384 -8.59776 -8.39996 -8.16167 -6.80413 -5.76185 -3.23513 0.26944 0.85324 2.16959 2.51802 3.13160 3.18944 3.33368 3.40037 3.41948 3.62993 3.80225 3.84772 4.04978 4.35707 4.43912 4.51642 4.85017 5.04143 5.12928 5.33928 5.37068 5.38107 5.45178 5.48144 5.51602 5.55232 5.65169 5.69885 5.96900 6.08664 6.16556 6.22989 6.34085 6.40956 6.47202 6.74220 6.79426 6.87652 6.93878 7.12314 7.39286 7.70546 7.71854 7.78347 8.14327 8.35524 8.78503 9.19673 9.82766 10.32804 11.28206 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018259 B = 0.002339 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.144230 B =11968.406300 C =12835.801910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.068 0.932 4 C 0.110 3.890 5 N -0.709 5.709 6 C 0.512 3.488 7 O -0.539 6.539 8 C -0.064 4.064 9 C 0.089 3.911 10 C -0.080 4.080 11 N -0.352 5.352 12 C 0.020 3.980 13 C 0.079 3.921 14 F -0.124 7.124 15 C -0.143 4.143 16 C -0.035 4.035 17 C 0.204 3.796 18 N -0.446 5.446 19 N -0.594 5.594 20 C 0.166 3.834 21 C -0.259 4.259 22 H 0.069 0.931 23 C 0.004 3.996 24 N -0.904 5.904 25 Si 0.903 3.097 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.280 1.280 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.409 0.591 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.188 0.812 38 H 0.172 0.828 39 H 0.154 0.846 40 H 0.162 0.838 41 H 0.026 0.974 42 H 0.042 0.958 43 H -0.003 1.003 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.974 -4.712 18.289 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.016 4.016 5 N -0.360 5.360 6 C 0.297 3.703 7 O -0.417 6.417 8 C -0.105 4.105 9 C -0.045 4.045 10 C -0.211 4.211 11 N -0.025 5.025 12 C -0.103 4.103 13 C 0.057 3.943 14 F -0.103 7.103 15 C -0.167 4.167 16 C -0.055 4.055 17 C -0.039 4.039 18 N -0.165 5.165 19 N -0.317 5.317 20 C 0.021 3.979 21 C -0.389 4.389 22 H 0.087 0.913 23 C -0.195 4.195 24 N -0.549 5.549 25 Si 0.734 3.266 26 H -0.215 1.215 27 H -0.219 1.219 28 H -0.205 1.205 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.245 0.755 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.205 0.795 38 H 0.189 0.811 39 H 0.171 0.829 40 H 0.180 0.820 41 H 0.044 0.956 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.080 -4.492 18.964 22.418 hybrid contribution 1.440 -0.586 -1.436 2.116 sum 12.520 -5.078 17.528 22.131 Atomic orbital electron populations 1.22185 0.97594 1.01322 1.00520 1.20623 0.92516 0.95523 0.86450 0.91389 1.21885 0.79728 1.01052 0.98968 1.45851 1.08229 1.58868 1.23071 1.20152 0.88981 0.78520 0.82696 1.90694 1.69963 1.47730 1.33282 1.20047 0.93978 1.02376 0.94109 1.20189 0.97062 0.94430 0.92822 1.22449 1.10758 1.03395 0.84526 1.42436 1.32633 1.19474 1.07938 1.21167 1.00809 0.94815 0.93559 1.16583 0.98281 0.89718 0.89762 1.91552 1.76191 1.58159 1.84352 1.21035 0.99430 0.94825 1.01393 1.20182 0.97630 0.98373 0.89324 1.21039 0.99033 0.90119 0.93746 1.70697 1.20661 1.24996 1.00175 1.43980 1.58178 1.08037 1.21507 1.20713 0.99757 0.83399 0.93985 1.19212 1.18980 1.11330 0.89341 0.91307 1.25044 0.98431 0.99367 0.96645 1.70073 1.36038 1.33061 1.15718 0.86279 0.81296 0.78631 0.80430 1.21536 1.21866 1.20509 0.93220 0.93982 0.92280 0.92360 0.92639 0.75490 0.87056 0.87205 0.79512 0.81061 0.82856 0.82039 0.95552 0.93911 0.98412 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.19 37.16 0.34 -2.45 16 2 C 0.16 3.02 2.87 -67.93 -0.19 2.82 16 3 H 0.07 1.29 7.86 -51.93 -0.41 0.88 16 4 C 0.11 1.97 4.93 -4.04 -0.02 1.95 16 5 N -0.71 -12.05 5.39 -60.29 -0.32 -12.38 16 6 C 0.51 8.71 7.82 -10.99 -0.09 8.63 16 7 O -0.54 -11.21 15.57 5.56 0.09 -11.13 16 8 C -0.06 -0.83 6.26 -29.03 -0.18 -1.01 16 9 C 0.09 1.25 5.84 -82.98 -0.48 0.77 16 10 C -0.08 -0.92 11.63 -16.44 -0.19 -1.11 16 11 N -0.35 -4.03 2.95 -62.59 -0.18 -4.22 16 12 C 0.02 0.17 10.92 -16.53 -0.18 -0.01 16 13 C 0.08 0.66 7.25 -39.79 -0.29 0.37 16 14 F -0.12 -1.02 17.26 2.25 0.04 -0.98 16 15 C -0.14 -1.08 10.05 -39.49 -0.40 -1.48 16 16 C -0.03 -0.33 10.10 -39.37 -0.40 -0.73 16 17 C 0.20 2.67 7.81 -156.05 -1.22 1.45 16 18 N -0.45 -7.06 10.69 -9.01 -0.10 -7.16 16 19 N -0.59 -13.62 2.29 -173.49 -0.40 -14.02 16 20 C 0.17 3.94 8.00 59.85 0.48 4.42 16 21 C -0.26 -6.48 9.32 -15.06 -0.14 -6.62 16 22 H 0.07 1.65 7.82 -52.48 -0.41 1.24 16 23 C 0.00 0.10 5.12 -17.43 -0.09 0.01 16 24 N -0.90 -25.31 10.63 55.49 0.59 -24.72 16 25 Si 0.90 20.64 29.57 -169.99 -5.03 15.61 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.13 6.86 -51.93 -0.36 0.78 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.41 6.83 7.89 -40.82 -0.32 6.50 16 35 H 0.11 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.03 0.68 7.43 -51.93 -0.39 0.30 16 42 H 0.04 1.09 7.20 -51.93 -0.37 0.72 16 43 H 0.00 -0.06 6.53 -51.93 -0.34 -0.40 16 44 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -33.38 373.25 -8.67 -42.05 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.93 Total: 4.30 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -3.05 Total: 7.01 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.41 Total: -62.49 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.38 -8.67 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275887677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.949 kcal (2) G-P(sol) polarization free energy of solvation -33.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.53 seconds