Wall clock time and date at job start Tue Mar 31 2020 19:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47333 * 2 1 4 4 C 1.53001 * 109.46901 * 119.99878 * 2 1 3 5 5 N 1.46507 * 109.47163 * 175.00264 * 4 2 1 6 6 C 1.34774 * 119.99804 * 180.02562 * 5 4 2 7 7 O 1.21272 * 120.00568 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99607 * 179.97438 * 6 5 4 9 9 C 1.50705 * 109.47257 * 180.02562 * 8 6 5 10 10 C 1.35123 * 125.69656 * 124.99825 * 9 8 6 11 11 N 1.36804 * 107.18670 * 179.97438 * 10 9 8 12 12 C 1.36604 * 132.54262 * 179.97438 * 11 10 9 13 13 C 1.35140 * 120.57367 * 179.97438 * 12 11 10 14 14 F 1.35102 * 119.87812 * 180.02562 * 13 12 11 15 15 C 1.40614 * 120.24575 * 0.04137 * 13 12 11 16 16 C 1.36008 * 119.68627 * 359.97438 * 15 13 12 17 17 C 1.37029 * 107.01325 * 359.97438 * 11 10 9 18 18 N 1.32604 * 108.03404 * 359.75958 * 17 11 10 19 19 N 1.46499 * 109.47584 * 239.99546 * 2 1 3 20 20 C 1.46497 * 120.00331 * 300.00679 * 19 2 1 21 21 C 1.36935 * 120.00142 * 119.99562 * 19 2 1 22 22 H 1.08005 * 119.99455 * 22.83203 * 21 19 2 23 23 C 1.38810 * 120.00567 * 202.82774 * 21 19 2 24 24 N 1.31615 * 119.99868 * 11.58678 * 23 21 19 25 25 Si 1.86805 * 120.00209 * 191.59002 * 23 21 19 26 26 H 1.48503 * 109.47043 * 89.99721 * 25 23 21 27 27 H 1.48497 * 109.46811 * 209.99941 * 25 23 21 28 28 H 1.48501 * 109.46984 * 329.99685 * 25 23 21 29 29 H 1.09004 * 109.46654 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47304 * 300.00020 * 1 2 3 31 31 H 1.09001 * 109.46562 * 60.00616 * 1 2 3 32 32 H 1.08996 * 109.47281 * 55.00460 * 4 2 1 33 33 H 1.09001 * 109.47304 * 295.00064 * 4 2 1 34 34 H 0.97004 * 119.99926 * 359.97438 * 5 4 2 35 35 H 1.09006 * 109.47426 * 299.99416 * 8 6 5 36 36 H 1.08999 * 109.47431 * 59.99990 * 8 6 5 37 37 H 1.08002 * 126.40944 * 359.97438 * 10 9 8 38 38 H 1.07998 * 119.71591 * 0.02562 * 12 11 10 39 39 H 1.08002 * 120.15274 * 179.97438 * 15 13 12 40 40 H 1.08001 * 120.31247 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.47603 * 93.84481 * 20 19 2 42 42 H 1.09000 * 109.47182 * 213.84831 * 20 19 2 43 43 H 1.09002 * 109.46552 * 333.84555 * 20 19 2 44 44 H 0.97001 * 120.00366 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.8264 1.1907 6 6 4.1729 -1.4291 2.1909 7 8 3.5698 -1.8849 3.1391 8 6 5.6748 -1.5377 2.1303 9 6 6.1771 -2.2492 3.3602 10 6 6.9568 -3.3527 3.3696 11 7 7.1850 -3.6753 4.6793 12 6 7.8947 -4.6803 5.2729 13 6 7.9610 -4.7726 6.6195 14 9 8.6674 -5.7720 7.1917 15 6 7.2972 -3.8324 7.4273 16 6 6.5874 -2.8277 6.8472 17 6 6.5286 -2.7449 5.4417 18 7 5.9314 -1.8903 4.6223 19 7 2.0184 -0.6907 -1.1961 20 6 1.6645 -2.0932 -1.4280 21 6 2.8057 -0.0252 -2.0975 22 1 3.3667 0.8436 -1.7864 23 6 2.8827 -0.4673 -3.4111 24 7 2.0368 -1.3747 -3.8507 25 14 4.1871 0.2255 -4.5548 26 1 5.4155 -0.6042 -4.4650 27 1 3.6803 0.2101 -5.9505 28 1 4.5025 1.6213 -4.1580 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9824 -0.4628 0.4317 35 1 5.9629 -2.1007 1.2424 36 1 6.1098 -0.5394 2.0845 37 1 7.3301 -3.8812 2.5049 38 1 8.4080 -5.4070 4.6607 39 1 7.3508 -3.9078 8.5034 40 1 6.0740 -2.0998 7.4580 41 1 0.7758 -2.1446 -2.0569 42 1 2.4917 -2.5991 -1.9258 43 1 1.4628 -2.5795 -0.4735 44 1 2.0909 -1.6840 -4.7685 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275887677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:59 Heat of formation + Delta-G solvation = 17.070503 kcal Electronic energy + Delta-G solvation = -27884.750373 eV Core-core repulsion = 23753.295229 eV Total energy + Delta-G solvation = -4131.455144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 23.47 seconds Orbital eigenvalues (eV) -50.09485 -43.85596 -40.56868 -38.51515 -38.02377 -35.31197 -34.76593 -33.75339 -32.72427 -31.10221 -30.12206 -29.02778 -27.98330 -26.73411 -24.92789 -24.56041 -23.80453 -22.24561 -21.14007 -20.70163 -19.36576 -18.81678 -18.67386 -17.91233 -17.40638 -17.18641 -17.08669 -16.82764 -16.29435 -16.16173 -16.05889 -15.71283 -15.46348 -14.97304 -14.76116 -14.61634 -14.41337 -14.34872 -13.87386 -13.79862 -13.63881 -13.12420 -12.97623 -12.80472 -12.64984 -12.62865 -12.46441 -12.33700 -12.23530 -12.05620 -12.05264 -11.74804 -11.47579 -11.12816 -10.76361 -10.57108 -9.84691 -9.63543 -8.94553 -8.73843 -7.74690 -5.23095 -0.41658 0.10630 1.41244 1.53858 1.55165 1.62942 1.66476 1.84101 2.32475 2.54854 2.59856 2.93300 3.09747 3.36177 3.40702 3.67882 3.74823 3.81250 4.00534 4.07711 4.12171 4.34474 4.40984 4.46555 4.58882 4.63017 4.66382 4.76801 4.79215 4.80402 4.82950 4.92475 4.97239 5.06900 5.26224 5.39689 5.40561 5.44752 5.51693 5.68446 5.73950 5.78239 5.97772 6.39549 6.79026 6.84978 7.21828 7.45525 7.92916 8.39473 9.29155 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018259 B = 0.002339 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.144230 B =11968.406300 C =12835.801910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 H 0.075 0.925 4 C 0.121 3.879 5 N -0.707 5.707 6 C 0.510 3.490 7 O -0.580 6.580 8 C -0.056 4.056 9 C 0.056 3.944 10 C -0.077 4.077 11 N -0.357 5.357 12 C 0.016 3.984 13 C 0.078 3.922 14 F -0.121 7.121 15 C -0.121 4.121 16 C -0.057 4.057 17 C 0.185 3.815 18 N -0.498 5.498 19 N -0.602 5.602 20 C 0.187 3.813 21 C -0.253 4.253 22 H 0.083 0.917 23 C -0.054 4.054 24 N -0.941 5.941 25 Si 0.966 3.034 26 H -0.285 1.285 27 H -0.307 1.307 28 H -0.266 1.266 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.412 0.588 35 H 0.138 0.862 36 H 0.127 0.873 37 H 0.221 0.779 38 H 0.201 0.799 39 H 0.186 0.814 40 H 0.175 0.825 41 H -0.002 1.002 42 H 0.018 0.982 43 H 0.015 0.985 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.918 -4.727 19.651 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.051 3.949 3 H 0.093 0.907 4 C -0.006 4.006 5 N -0.359 5.359 6 C 0.297 3.703 7 O -0.460 6.460 8 C -0.096 4.096 9 C -0.077 4.077 10 C -0.208 4.208 11 N -0.029 5.029 12 C -0.107 4.107 13 C 0.055 3.945 14 F -0.099 7.099 15 C -0.145 4.145 16 C -0.077 4.077 17 C -0.059 4.059 18 N -0.218 5.218 19 N -0.325 5.325 20 C 0.042 3.958 21 C -0.383 4.383 22 H 0.100 0.900 23 C -0.249 4.249 24 N -0.588 5.588 25 Si 0.796 3.204 26 H -0.212 1.212 27 H -0.234 1.234 28 H -0.191 1.191 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.248 0.752 35 H 0.155 0.845 36 H 0.145 0.855 37 H 0.237 0.763 38 H 0.218 0.782 39 H 0.203 0.797 40 H 0.192 0.808 41 H 0.016 0.984 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.044 -4.479 20.350 24.583 hybrid contribution 0.854 -0.629 -1.689 1.995 sum 13.898 -5.109 18.660 23.822 Atomic orbital electron populations 1.22082 0.96431 1.01107 1.01280 1.20763 0.93367 0.95567 0.85235 0.90654 1.21664 0.80486 0.99939 0.98468 1.45864 1.07807 1.58918 1.23291 1.20858 0.90689 0.77184 0.81616 1.90671 1.71218 1.49376 1.34772 1.20070 0.90559 1.03915 0.95043 1.20450 0.98668 0.95946 0.92672 1.22903 1.09825 1.02626 0.85457 1.42569 1.32655 1.19734 1.07898 1.21660 1.00229 0.94485 0.94292 1.16714 0.98102 0.89769 0.89900 1.91569 1.76083 1.58023 1.84254 1.21386 0.97072 0.93092 1.02937 1.20430 0.99178 0.99880 0.88195 1.21514 0.99123 0.90281 0.94978 1.70592 1.22767 1.27048 1.01394 1.44120 1.58312 1.07880 1.22196 1.20354 0.97434 0.84174 0.93877 1.19608 1.18355 1.10896 0.89399 0.89960 1.25775 1.00489 1.00260 0.98344 1.70252 1.38056 1.35026 1.15510 0.85271 0.78899 0.78599 0.77651 1.21164 1.23425 1.19067 0.93958 0.90723 0.93931 0.94040 0.91658 0.75157 0.84459 0.85493 0.76282 0.78188 0.79668 0.80779 0.98406 0.96323 0.96678 0.94660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.18 9.19 71.98 0.66 -4.51 16 2 C 0.16 5.87 2.87 44.99 0.13 6.00 16 3 H 0.08 2.71 7.86 -2.39 -0.02 2.70 16 4 C 0.12 4.22 4.93 86.38 0.43 4.65 16 5 N -0.71 -23.43 5.39 -463.06 -2.50 -25.92 16 6 C 0.51 17.12 7.82 87.66 0.69 17.81 16 7 O -0.58 -24.37 15.57 -3.01 -0.05 -24.42 16 8 C -0.06 -1.37 6.26 29.10 0.18 -1.19 16 9 C 0.06 1.54 5.84 41.59 0.24 1.78 16 10 C -0.08 -1.66 11.63 83.20 0.97 -0.69 16 11 N -0.36 -7.68 2.95 -351.93 -1.04 -8.72 16 12 C 0.02 0.25 10.92 83.24 0.91 1.15 16 13 C 0.08 1.09 7.25 22.14 0.16 1.25 16 14 F -0.12 -1.65 17.26 44.97 0.78 -0.87 16 15 C -0.12 -1.55 10.05 22.33 0.22 -1.33 16 16 C -0.06 -1.03 10.10 22.41 0.23 -0.80 16 17 C 0.18 4.78 7.81 134.11 1.05 5.83 16 18 N -0.50 -15.95 10.69 -182.42 -1.95 -17.90 16 19 N -0.60 -27.38 2.29 -702.79 -1.61 -28.99 16 20 C 0.19 9.00 8.00 127.77 1.02 10.02 16 21 C -0.25 -12.42 9.32 84.03 0.78 -11.64 16 22 H 0.08 3.78 7.82 -2.91 -0.02 3.76 16 23 C -0.05 -2.82 5.12 84.86 0.43 -2.39 16 24 N -0.94 -53.74 10.63 21.65 0.23 -53.51 16 25 Si 0.97 42.32 29.57 68.60 2.03 44.35 16 26 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 27 H -0.31 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 29 H 0.04 1.51 7.67 -2.39 -0.02 1.49 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.60 6.86 -2.39 -0.02 1.58 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.41 13.19 7.89 -92.71 -0.73 12.46 16 35 H 0.14 2.58 8.10 -2.38 -0.02 2.56 16 36 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.22 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.19 1.10 8.06 -2.91 -0.02 1.07 16 40 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.00 -0.13 7.43 -2.39 -0.02 -0.15 16 42 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 43 H 0.01 0.65 6.53 -2.39 -0.02 0.64 16 44 H 0.24 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -74.00 373.25 4.30 -69.69 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.30 Total: 20.34 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 8.10 Total: 25.95 kcal Atomic # 7 Polarization: -128.18 SS G_CDS: -6.86 Total: -135.04 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.78 Total: -0.87 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -74.00 4.30 -69.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275887677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.763 kcal (2) G-P(sol) polarization free energy of solvation -73.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.47 seconds