Wall clock time and date at job start Tue Mar 31 2020 21:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47131 * 273.75051 * 3 2 1 5 5 H 1.48497 * 109.47039 * 33.75358 * 3 2 1 6 6 H 1.48504 * 109.46991 * 153.75419 * 3 2 1 7 7 C 1.38820 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99304 * 339.29790 * 7 2 1 9 9 N 1.36930 * 120.00093 * 159.29538 * 7 2 1 10 10 C 1.46899 * 120.68844 * 332.34187 * 9 7 2 11 11 C 1.53143 * 109.07466 * 235.34539 * 10 9 7 12 12 C 1.53181 * 109.36136 * 303.52571 * 11 10 9 13 13 C 1.52635 * 109.36536 * 59.05383 * 12 11 10 14 14 C 1.53449 * 113.69508 * 74.13986 * 13 12 11 15 15 N 1.47664 * 85.97302 * 91.16018 * 14 13 12 16 16 C 1.34777 * 134.45778 * 204.30484 * 15 14 13 17 17 O 1.21288 * 120.00266 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99772 * 359.97438 * 16 15 14 19 19 C 1.53000 * 109.46928 * 180.02562 * 18 16 15 20 20 C 1.53007 * 109.47052 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.47052 * 179.97438 * 20 19 18 22 22 F 1.39896 * 109.47388 * 59.99752 * 21 20 19 23 23 F 1.39897 * 109.46767 * 179.97438 * 21 20 19 24 24 F 1.39898 * 109.47154 * 299.99306 * 21 20 19 25 25 C 1.47677 * 91.09190 * 24.28612 * 15 14 13 26 26 C 1.47110 * 120.68697 * 152.32552 * 9 7 2 27 27 H 0.96998 * 119.99495 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.53292 * 115.47056 * 10 9 7 29 29 H 1.08998 * 109.60547 * 355.27145 * 10 9 7 30 30 H 1.09001 * 109.48837 * 63.49046 * 11 10 9 31 31 H 1.09000 * 109.49427 * 183.55705 * 11 10 9 32 32 H 1.08994 * 109.49443 * 179.02430 * 12 11 10 33 33 H 1.09006 * 109.48469 * 299.08847 * 12 11 10 34 34 H 1.08994 * 113.79191 * 205.42889 * 14 13 12 35 35 H 1.09009 * 113.79416 * 336.89456 * 14 13 12 36 36 H 1.09001 * 109.46995 * 299.99327 * 18 16 15 37 37 H 1.09001 * 109.47216 * 59.99636 * 18 16 15 38 38 H 1.09000 * 109.47369 * 299.99224 * 19 18 16 39 39 H 1.09001 * 109.47548 * 59.99742 * 19 18 16 40 40 H 1.09008 * 109.46617 * 299.99552 * 20 19 18 41 41 H 1.09001 * 109.47250 * 59.99443 * 20 19 18 42 42 H 1.09000 * 113.79512 * 221.44490 * 25 15 14 43 43 H 1.09000 * 113.79196 * 89.97259 * 25 15 14 44 44 H 1.09002 * 109.63607 * 248.34351 * 26 9 7 45 45 H 1.08999 * 109.63705 * 8.94635 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4184 2.0922 -1.3970 5 1 1.4897 2.6284 0.7779 6 1 3.5853 1.4185 0.6192 7 6 2.0103 -1.2022 -0.0005 8 1 1.5225 -2.1074 0.3297 9 7 3.3133 -1.2403 -0.4198 10 6 3.8158 -0.2636 -1.3953 11 6 4.4232 -1.0120 -2.5853 12 6 5.5174 -1.9598 -2.0844 13 6 4.9149 -2.9468 -1.0881 14 6 4.0519 -4.0339 -1.7423 15 7 5.2918 -4.8333 -1.8064 16 6 5.7213 -5.8486 -2.5818 17 8 6.8219 -6.3254 -2.4020 18 6 4.8339 -6.3915 -3.6722 19 6 5.5545 -7.5304 -4.3964 20 6 4.6539 -8.0812 -5.5039 21 6 5.3747 -9.2196 -6.2285 22 9 5.6702 -10.2393 -5.3174 23 9 4.5510 -9.7236 -7.2407 24 9 6.5620 -8.7374 -6.7898 25 6 5.8729 -4.0742 -0.6809 26 6 4.2389 -2.2599 0.0975 27 1 -0.4849 0.8401 0.0004 28 1 4.5792 0.3585 -0.9279 29 1 2.9946 0.3645 -1.7402 30 1 3.6459 -1.5875 -3.0881 31 1 4.8548 -0.2952 -3.2839 32 1 5.9393 -2.5063 -2.9278 33 1 6.3023 -1.3828 -1.5953 34 1 3.2935 -4.4511 -1.0799 35 1 3.6580 -3.7540 -2.7194 36 1 3.9091 -6.7674 -3.2345 37 1 4.6033 -5.5972 -4.3821 38 1 6.4795 -7.1550 -4.8341 39 1 5.7847 -8.3246 -3.6862 40 1 3.7286 -8.4566 -5.0666 41 1 4.4240 -7.2868 -6.2140 42 1 6.9259 -3.8264 -0.8146 43 1 5.6562 -4.5034 0.2974 44 1 4.9935 -1.7852 0.7248 45 1 3.6847 -2.9960 0.6799 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276878428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:48 Heat of formation + Delta-G solvation = -146.074487 kcal Electronic energy + Delta-G solvation = -29333.167622 eV Core-core repulsion = 24743.948794 eV Total energy + Delta-G solvation = -4589.218828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -50.38275 -47.89054 -47.84957 -40.73876 -38.65670 -36.20927 -35.20258 -32.77356 -31.04459 -30.91166 -29.60521 -26.47369 -26.19285 -25.45627 -24.26498 -22.19992 -22.09725 -21.22445 -19.26090 -18.84899 -18.57801 -18.10011 -17.75410 -16.83665 -16.66340 -16.32170 -15.61674 -15.49517 -15.33372 -14.78479 -14.66234 -14.29138 -14.08354 -14.04002 -14.01512 -13.92456 -13.75938 -13.57840 -13.31009 -13.07864 -12.93211 -12.54714 -12.43663 -12.17189 -12.03389 -11.91139 -11.76569 -11.57488 -11.55302 -11.22367 -10.98140 -10.77398 -10.49732 -10.16386 -10.02318 -9.78098 -9.69303 -9.49243 -8.70420 -8.59313 -7.05302 -6.02751 -3.39232 2.43593 2.61657 2.85435 3.26481 3.44071 3.46073 3.49462 3.68480 3.73570 4.26238 4.43649 4.46919 4.53805 4.69093 4.78946 4.91811 4.95442 5.01529 5.03944 5.11865 5.27339 5.30813 5.48359 5.48402 5.56022 5.63033 5.65119 5.71335 5.79717 5.80534 5.88442 5.97116 6.15489 6.22508 6.26187 6.39278 6.48469 6.54639 6.62834 6.82514 7.75583 7.86889 8.14478 8.24107 8.84906 9.63860 10.01364 11.12951 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.002311 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.542178 B =12113.928509 C =12559.801428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.086 0.914 9 N -0.603 5.603 10 C 0.125 3.875 11 C -0.134 4.134 12 C -0.083 4.083 13 C -0.105 4.105 14 C 0.121 3.879 15 N -0.642 5.642 16 C 0.533 3.467 17 O -0.551 6.551 18 C -0.132 4.132 19 C -0.109 4.109 20 C -0.167 4.167 21 C 0.452 3.548 22 F -0.183 7.183 23 F -0.187 7.187 24 F -0.183 7.183 25 C 0.115 3.885 26 C 0.164 3.836 27 H 0.263 0.737 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.029 0.971 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.635 -13.426 -10.277 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.174 4.174 3 Si 0.713 3.287 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.103 0.897 9 N -0.326 5.326 10 C -0.001 4.001 11 C -0.173 4.173 12 C -0.121 4.121 13 C -0.107 4.107 14 C -0.001 4.001 15 N -0.377 5.377 16 C 0.322 3.678 17 O -0.430 6.430 18 C -0.172 4.172 19 C -0.147 4.147 20 C -0.206 4.206 21 C 0.398 3.602 22 F -0.165 7.165 23 F -0.168 7.168 24 F -0.165 7.165 25 C -0.008 4.008 26 C 0.037 3.963 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.047 0.953 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.118 -13.781 -10.301 19.961 hybrid contribution 0.370 0.816 -0.158 0.909 sum 10.489 -12.966 -10.459 19.685 Atomic orbital electron populations 1.69829 1.05764 1.26639 1.52727 1.25275 0.95186 0.97606 0.99335 0.86957 0.80119 0.84695 0.76926 1.21692 1.23226 1.19510 1.18865 0.84824 0.94721 1.40508 0.89666 1.44332 1.08481 1.33654 1.46181 1.21315 0.97351 0.92064 0.89324 1.22016 0.97881 0.98543 0.98881 1.21114 0.97614 0.96245 0.97134 1.22585 0.95480 0.93999 0.98669 1.23278 0.87708 0.87575 1.01546 1.50202 1.20143 1.33767 1.33578 1.20199 0.87254 0.77773 0.82541 1.90700 1.21992 1.58667 1.71647 1.21521 0.99410 0.99075 0.97226 1.21333 0.98327 0.98605 0.96399 1.22930 1.00849 0.96456 1.00332 1.20597 0.77808 0.84155 0.77620 1.93192 1.93767 1.62762 1.66766 1.93190 1.72188 1.88980 1.62476 1.93193 1.49289 1.87839 1.86160 1.23217 0.99087 0.88576 0.89908 1.20819 0.92238 0.91697 0.91503 0.92716 0.95693 0.91020 0.91706 0.92635 0.92770 0.91934 0.89136 0.90050 0.88506 0.88540 0.89754 0.89752 0.87018 0.87034 0.90393 0.89645 0.95285 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.49 13.97 55.49 0.78 -25.71 16 2 C 0.03 0.69 5.24 -17.43 -0.09 0.60 16 3 Si 0.88 21.31 24.38 -169.99 -4.14 17.16 16 4 H -0.29 -6.75 6.64 56.52 0.38 -6.38 16 5 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.27 -6.40 6.63 56.52 0.37 -6.02 16 7 C -0.26 -6.68 10.05 -15.06 -0.15 -6.83 16 8 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 9 N -0.60 -12.77 2.77 -172.46 -0.48 -13.25 16 10 C 0.12 2.47 4.17 -3.75 -0.02 2.46 16 11 C -0.13 -2.09 6.01 -26.56 -0.16 -2.25 16 12 C -0.08 -1.14 5.02 -26.82 -0.13 -1.28 16 13 C -0.10 -1.44 0.87 -154.43 -0.13 -1.58 16 14 C 0.12 1.54 7.59 -3.18 -0.02 1.52 16 15 N -0.64 -8.19 3.45 -180.47 -0.62 -8.82 16 16 C 0.53 6.98 8.06 -10.98 -0.09 6.89 16 17 O -0.55 -9.19 16.71 5.55 0.09 -9.10 16 18 C -0.13 -1.17 5.45 -27.88 -0.15 -1.32 16 19 C -0.11 -0.93 4.26 -26.73 -0.11 -1.04 16 20 C -0.17 -1.04 5.26 -26.73 -0.14 -1.18 16 21 C 0.45 3.80 3.16 37.16 0.12 3.91 16 22 F -0.18 -1.78 16.80 2.25 0.04 -1.74 16 23 F -0.19 -1.66 17.32 2.25 0.04 -1.62 16 24 F -0.18 -1.79 16.80 2.25 0.04 -1.75 16 25 C 0.11 1.44 7.97 -3.17 -0.03 1.42 16 26 C 0.16 2.77 5.70 -3.82 -0.02 2.74 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.50 7.18 -51.93 -0.37 0.12 16 29 H 0.07 1.59 4.39 -51.93 -0.23 1.36 16 30 H 0.06 1.03 7.37 -51.93 -0.38 0.65 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.70 8.02 -51.93 -0.42 0.29 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.16 7.97 -51.93 -0.41 0.75 16 35 H 0.08 1.00 7.38 -51.92 -0.38 0.62 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.82 7.76 -51.93 -0.40 0.42 16 39 H 0.08 0.82 7.76 -51.93 -0.40 0.41 16 40 H 0.11 0.52 8.14 -51.92 -0.42 0.09 16 41 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 43 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.07 1.12 7.78 -51.93 -0.40 0.72 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -31.15 366.52 -6.69 -37.85 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.82 Total: -2.60 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.14 Total: 4.05 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.33 Total: -47.78 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.11 Total: -5.12 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.15 -6.69 -37.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276878428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.229 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds