Wall clock time and date at job start Tue Mar 31 2020 21:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47131 * 273.75051 * 3 2 1 5 5 H 1.48497 * 109.47039 * 33.75358 * 3 2 1 6 6 H 1.48504 * 109.46991 * 153.75419 * 3 2 1 7 7 C 1.38820 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99304 * 339.29790 * 7 2 1 9 9 N 1.36930 * 120.00093 * 159.29538 * 7 2 1 10 10 C 1.46899 * 120.68844 * 332.34187 * 9 7 2 11 11 C 1.53143 * 109.07466 * 235.34539 * 10 9 7 12 12 C 1.53181 * 109.36136 * 303.52571 * 11 10 9 13 13 C 1.52635 * 109.36536 * 59.05383 * 12 11 10 14 14 C 1.53449 * 113.69508 * 74.13986 * 13 12 11 15 15 N 1.47664 * 85.97302 * 91.16018 * 14 13 12 16 16 C 1.34777 * 134.45778 * 204.30484 * 15 14 13 17 17 O 1.21288 * 120.00266 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99772 * 359.97438 * 16 15 14 19 19 C 1.53000 * 109.46928 * 180.02562 * 18 16 15 20 20 C 1.53007 * 109.47052 * 180.02562 * 19 18 16 21 21 C 1.53000 * 109.47052 * 179.97438 * 20 19 18 22 22 F 1.39896 * 109.47388 * 59.99752 * 21 20 19 23 23 F 1.39897 * 109.46767 * 179.97438 * 21 20 19 24 24 F 1.39898 * 109.47154 * 299.99306 * 21 20 19 25 25 C 1.47677 * 91.09190 * 24.28612 * 15 14 13 26 26 C 1.47110 * 120.68697 * 152.32552 * 9 7 2 27 27 H 0.96998 * 119.99495 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.53292 * 115.47056 * 10 9 7 29 29 H 1.08998 * 109.60547 * 355.27145 * 10 9 7 30 30 H 1.09001 * 109.48837 * 63.49046 * 11 10 9 31 31 H 1.09000 * 109.49427 * 183.55705 * 11 10 9 32 32 H 1.08994 * 109.49443 * 179.02430 * 12 11 10 33 33 H 1.09006 * 109.48469 * 299.08847 * 12 11 10 34 34 H 1.08994 * 113.79191 * 205.42889 * 14 13 12 35 35 H 1.09009 * 113.79416 * 336.89456 * 14 13 12 36 36 H 1.09001 * 109.46995 * 299.99327 * 18 16 15 37 37 H 1.09001 * 109.47216 * 59.99636 * 18 16 15 38 38 H 1.09000 * 109.47369 * 299.99224 * 19 18 16 39 39 H 1.09001 * 109.47548 * 59.99742 * 19 18 16 40 40 H 1.09008 * 109.46617 * 299.99552 * 20 19 18 41 41 H 1.09001 * 109.47250 * 59.99443 * 20 19 18 42 42 H 1.09000 * 113.79512 * 221.44490 * 25 15 14 43 43 H 1.09000 * 113.79196 * 89.97259 * 25 15 14 44 44 H 1.09002 * 109.63607 * 248.34351 * 26 9 7 45 45 H 1.08999 * 109.63705 * 8.94635 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4184 2.0922 -1.3970 5 1 1.4897 2.6284 0.7779 6 1 3.5853 1.4185 0.6192 7 6 2.0103 -1.2022 -0.0005 8 1 1.5225 -2.1074 0.3297 9 7 3.3133 -1.2403 -0.4198 10 6 3.8158 -0.2636 -1.3953 11 6 4.4232 -1.0120 -2.5853 12 6 5.5174 -1.9598 -2.0844 13 6 4.9149 -2.9468 -1.0881 14 6 4.0519 -4.0339 -1.7423 15 7 5.2918 -4.8333 -1.8064 16 6 5.7213 -5.8486 -2.5818 17 8 6.8219 -6.3254 -2.4020 18 6 4.8339 -6.3915 -3.6722 19 6 5.5545 -7.5304 -4.3964 20 6 4.6539 -8.0812 -5.5039 21 6 5.3747 -9.2196 -6.2285 22 9 5.6702 -10.2393 -5.3174 23 9 4.5510 -9.7236 -7.2407 24 9 6.5620 -8.7374 -6.7898 25 6 5.8729 -4.0742 -0.6809 26 6 4.2389 -2.2599 0.0975 27 1 -0.4849 0.8401 0.0004 28 1 4.5792 0.3585 -0.9279 29 1 2.9946 0.3645 -1.7402 30 1 3.6459 -1.5875 -3.0881 31 1 4.8548 -0.2952 -3.2839 32 1 5.9393 -2.5063 -2.9278 33 1 6.3023 -1.3828 -1.5953 34 1 3.2935 -4.4511 -1.0799 35 1 3.6580 -3.7540 -2.7194 36 1 3.9091 -6.7674 -3.2345 37 1 4.6033 -5.5972 -4.3821 38 1 6.4795 -7.1550 -4.8341 39 1 5.7847 -8.3246 -3.6862 40 1 3.7286 -8.4566 -5.0666 41 1 4.4240 -7.2868 -6.2140 42 1 6.9259 -3.8264 -0.8146 43 1 5.6562 -4.5034 0.2974 44 1 4.9935 -1.7852 0.7248 45 1 3.6847 -2.9960 0.6799 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276878428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:32 Heat of formation + Delta-G solvation = -164.491707 kcal Electronic energy + Delta-G solvation = -29333.966253 eV Core-core repulsion = 24743.948794 eV Total energy + Delta-G solvation = -4590.017459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 15.53 seconds Orbital eigenvalues (eV) -51.06540 -48.57167 -48.55910 -41.82530 -39.76574 -37.63153 -35.90759 -34.46024 -32.64541 -32.08490 -30.48033 -27.60080 -27.23915 -27.10154 -25.05890 -23.70097 -23.00585 -22.40464 -20.29972 -19.52420 -19.31036 -19.18245 -18.64537 -18.50486 -17.65462 -17.26496 -17.12349 -16.61889 -16.29751 -15.69098 -15.48485 -15.46089 -15.22573 -15.05257 -14.98898 -14.76642 -14.72593 -14.65890 -14.62195 -14.30516 -13.87225 -13.68764 -13.53738 -13.34865 -13.17114 -13.02357 -12.93842 -12.68625 -12.53524 -12.40124 -12.26199 -11.97849 -11.85739 -11.65955 -11.49651 -11.29290 -11.10129 -10.85263 -10.54672 -9.66890 -8.84093 -8.10363 -5.40637 1.34051 1.46693 1.53987 1.62590 1.76635 1.96081 2.46997 2.87991 3.02998 3.08525 3.13292 3.26505 3.50517 3.59699 3.82850 3.95016 3.98246 4.04509 4.15942 4.26149 4.28157 4.43631 4.47461 4.51296 4.56184 4.61545 4.65757 4.69486 4.73916 4.85843 4.89130 4.95942 5.00398 5.06167 5.08817 5.14067 5.19408 5.24156 5.39521 5.52210 5.93568 6.19989 6.75575 6.98166 7.14748 7.69309 8.10414 9.09264 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.002311 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.542178 B =12113.928509 C =12559.801428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.034 4.034 3 Si 0.939 3.061 4 H -0.278 1.278 5 H -0.319 1.319 6 H -0.262 1.262 7 C -0.236 4.236 8 H 0.060 0.940 9 N -0.615 5.615 10 C 0.118 3.882 11 C -0.124 4.124 12 C -0.077 4.077 13 C -0.101 4.101 14 C 0.126 3.874 15 N -0.640 5.640 16 C 0.526 3.474 17 O -0.592 6.592 18 C -0.126 4.126 19 C -0.105 4.105 20 C -0.157 4.157 21 C 0.448 3.552 22 F -0.194 7.194 23 F -0.190 7.190 24 F -0.194 7.194 25 C 0.116 3.884 26 C 0.162 3.838 27 H 0.259 0.741 28 H 0.029 0.971 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.036 0.964 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.826 -13.619 -11.526 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.229 4.229 3 Si 0.770 3.230 4 H -0.205 1.205 5 H -0.249 1.249 6 H -0.186 1.186 7 C -0.365 4.365 8 H 0.078 0.922 9 N -0.339 5.339 10 C -0.007 4.007 11 C -0.163 4.163 12 C -0.115 4.115 13 C -0.103 4.103 14 C 0.004 3.996 15 N -0.374 5.374 16 C 0.318 3.682 17 O -0.474 6.474 18 C -0.165 4.165 19 C -0.143 4.143 20 C -0.194 4.194 21 C 0.394 3.606 22 F -0.176 7.176 23 F -0.171 7.171 24 F -0.176 7.176 25 C -0.006 4.006 26 C 0.037 3.963 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.099 0.901 43 H 0.112 0.888 44 H 0.054 0.946 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.359 -13.985 -11.565 21.409 hybrid contribution 0.055 0.775 0.264 0.820 sum 11.414 -13.210 -11.301 20.796 Atomic orbital electron populations 1.69951 1.07330 1.26931 1.56172 1.25830 0.95668 1.00582 1.00790 0.86025 0.78851 0.80981 0.77184 1.20488 1.24861 1.18610 1.18847 0.86494 0.93445 1.37742 0.92209 1.44449 1.07663 1.34785 1.47010 1.21372 0.96630 0.92112 0.90581 1.21898 0.98247 0.98925 0.97270 1.21075 0.97015 0.95872 0.97493 1.22441 0.96016 0.94234 0.97610 1.23236 0.87478 0.86956 1.01902 1.50214 1.19989 1.33725 1.33489 1.20946 0.87143 0.77167 0.82932 1.90687 1.23974 1.59873 1.72860 1.21567 0.99063 0.99573 0.96283 1.21231 0.98308 0.98089 0.96656 1.22937 1.00579 0.96092 0.99821 1.20987 0.77592 0.84522 0.77518 1.93171 1.93878 1.63449 1.67094 1.93182 1.72140 1.89114 1.62681 1.93172 1.50111 1.87905 1.86372 1.23216 0.98922 0.87988 0.90518 1.20950 0.91660 0.90759 0.92946 0.93209 0.95284 0.93588 0.92002 0.90409 0.91269 0.91261 0.89360 0.89091 0.86422 0.86332 0.91325 0.91405 0.84832 0.84787 0.90099 0.88775 0.94569 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.36 13.97 21.65 0.30 -57.06 16 2 C -0.03 -1.87 5.24 84.86 0.44 -1.43 16 3 Si 0.94 44.31 24.38 68.60 1.67 45.98 16 4 H -0.28 -12.43 6.64 99.48 0.66 -11.76 16 5 H -0.32 -15.69 7.11 99.48 0.71 -14.98 16 6 H -0.26 -11.77 6.63 99.48 0.66 -11.11 16 7 C -0.24 -12.08 10.05 84.04 0.84 -11.23 16 8 H 0.06 3.32 8.06 -2.91 -0.02 3.30 16 9 N -0.62 -25.20 2.77 -699.55 -1.94 -27.14 16 10 C 0.12 4.41 4.17 86.35 0.36 4.77 16 11 C -0.12 -3.47 6.01 30.70 0.18 -3.29 16 12 C -0.08 -1.83 5.02 30.53 0.15 -1.68 16 13 C -0.10 -2.50 0.87 -52.04 -0.05 -2.54 16 14 C 0.13 2.86 7.59 86.30 0.65 3.52 16 15 N -0.64 -14.64 3.45 -843.28 -2.91 -17.55 16 16 C 0.53 12.63 8.06 87.66 0.71 13.33 16 17 O -0.59 -19.08 16.71 -3.05 -0.05 -19.13 16 18 C -0.13 -1.83 5.45 29.85 0.16 -1.67 16 19 C -0.10 -1.58 4.26 30.60 0.13 -1.45 16 20 C -0.16 -1.51 5.26 30.60 0.16 -1.35 16 21 C 0.45 6.86 3.16 71.98 0.23 7.08 16 22 F -0.19 -3.62 16.80 44.97 0.76 -2.87 16 23 F -0.19 -3.07 17.32 44.97 0.78 -2.29 16 24 F -0.19 -3.60 16.80 44.97 0.76 -2.85 16 25 C 0.12 2.63 7.97 86.30 0.69 3.32 16 26 C 0.16 5.16 5.70 86.19 0.49 5.65 16 27 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 28 H 0.03 1.07 7.18 -2.38 -0.02 1.05 16 29 H 0.05 1.97 4.39 -2.39 -0.01 1.96 16 30 H 0.06 1.78 7.37 -2.39 -0.02 1.76 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.07 1.50 8.02 -2.39 -0.02 1.48 16 33 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.09 2.08 7.97 -2.39 -0.02 2.06 16 35 H 0.09 1.93 7.38 -2.38 -0.02 1.91 16 36 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.26 7.76 -2.39 -0.02 1.24 16 39 H 0.07 1.25 7.76 -2.39 -0.02 1.23 16 40 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 1.81 8.09 -2.39 -0.02 1.80 16 43 H 0.09 1.97 8.09 -2.39 -0.02 1.95 16 44 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 2.08 7.78 -2.39 -0.02 2.06 16 Total: -1.00 -68.75 366.52 5.43 -63.32 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.90 Total: 6.56 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 5.16 Total: 13.03 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -4.55 Total: -101.75 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.05 Total: -19.13 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 2.29 Total: -8.01 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.67 Total: 45.98 kcal Total: -68.75 5.43 -63.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276878428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.175 kcal (2) G-P(sol) polarization free energy of solvation -68.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.53 seconds