Wall clock time and date at job start Tue Mar 31 2020 21:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48498 * 109.46689 * 274.06421 * 3 2 1 5 5 H 1.48496 * 109.47199 * 34.06027 * 3 2 1 6 6 H 1.48489 * 109.47235 * 154.06506 * 3 2 1 7 7 C 1.38813 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99624 * 197.50301 * 7 2 1 9 9 N 1.36933 * 120.00029 * 17.50649 * 7 2 1 10 10 C 1.46931 * 120.62776 * 27.98226 * 9 7 2 11 11 C 1.53196 * 108.77478 * 126.36856 * 10 9 7 12 12 C 1.53045 * 109.31014 * 54.63520 * 11 10 9 13 13 F 1.39897 * 109.46327 * 58.65368 * 12 11 10 14 14 F 1.39901 * 109.45947 * 178.62800 * 12 11 10 15 15 C 1.53045 * 109.53734 * 298.63114 * 12 11 10 16 16 H 1.08999 * 109.49508 * 301.42044 * 15 12 11 17 17 C 1.52998 * 109.49862 * 181.31942 * 15 12 11 18 18 N 1.46498 * 109.47076 * 175.16404 * 17 15 12 19 19 C 1.34780 * 119.99612 * 180.02562 * 18 17 15 20 20 O 1.21279 * 120.00180 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99780 * 179.97438 * 19 18 17 22 22 C 1.53003 * 112.84502 * 50.33561 * 21 19 18 23 23 F 1.39910 * 109.46984 * 189.66361 * 22 21 19 24 24 C 1.53772 * 113.61875 * 279.14177 * 21 19 18 25 25 C 1.53960 * 87.02138 * 220.04734 * 24 21 19 26 26 C 1.53777 * 113.61553 * 181.53082 * 21 19 18 27 27 C 1.46924 * 120.63152 * 207.95684 * 9 7 2 28 28 H 0.96995 * 120.00056 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58122 * 246.15230 * 10 9 7 30 30 H 1.08993 * 109.59226 * 6.58314 * 10 9 7 31 31 H 1.09002 * 109.49676 * 174.58073 * 11 10 9 32 32 H 1.09000 * 109.49978 * 294.68429 * 11 10 9 33 33 H 1.09003 * 109.47061 * 295.16551 * 17 15 12 34 34 H 1.09006 * 109.46883 * 55.16056 * 17 15 12 35 35 H 0.96993 * 120.00221 * 359.97438 * 18 17 15 36 36 H 1.08998 * 109.47550 * 309.66550 * 22 21 19 37 37 H 1.09002 * 109.47213 * 69.66912 * 22 21 19 38 38 H 1.09003 * 113.61321 * 334.56462 * 24 21 19 39 39 H 1.08996 * 113.62156 * 105.46688 * 24 21 19 40 40 H 1.09000 * 113.53613 * 270.81180 * 25 24 21 41 41 H 1.08996 * 113.74297 * 139.94377 * 25 24 21 42 42 H 1.09006 * 113.61157 * 254.53581 * 26 21 19 43 43 H 1.09001 * 113.61389 * 25.34798 * 26 21 19 44 44 H 1.08998 * 109.58475 * 353.42067 * 27 9 7 45 45 H 1.09001 * 109.58659 * 113.84641 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4117 2.0960 -1.3966 5 1 1.4932 2.6264 0.7841 6 1 3.5880 1.4170 0.6123 7 6 2.0103 -1.2021 0.0005 8 1 3.0528 -1.2236 0.2818 9 7 1.3732 -2.3607 -0.3557 10 6 0.2350 -2.3340 -1.2844 11 6 0.5147 -3.3056 -2.4353 12 6 0.8274 -4.6905 -1.8639 13 9 -0.2552 -5.1334 -1.0964 14 9 1.0527 -5.5877 -2.9133 15 6 2.0773 -4.6110 -0.9843 16 1 2.9154 -4.2423 -1.5757 17 6 2.4081 -6.0021 -0.4400 18 7 3.6675 -5.9476 0.3064 19 6 4.1600 -7.0637 0.8794 20 8 3.5607 -8.1131 0.7768 21 6 5.4558 -7.0079 1.6467 22 6 5.4855 -5.8810 2.6812 23 9 6.7814 -5.7515 3.1926 24 6 6.7047 -7.0547 0.7508 25 6 7.3329 -7.9764 1.8121 26 6 5.8995 -8.3698 2.2063 27 6 1.8153 -3.6542 0.1831 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6710 -2.6391 -0.7607 30 1 0.1093 -1.3261 -1.6796 31 1 -0.3618 -3.3676 -3.0803 32 1 1.3677 -2.9494 -3.0130 33 1 1.6076 -6.3331 0.2217 34 1 2.5071 -6.7026 -1.2692 35 1 4.1473 -5.1086 0.3875 36 1 5.1863 -4.9456 2.2084 37 1 4.7964 -6.1146 3.4928 38 1 6.5361 -7.5446 -0.2082 39 1 7.2084 -6.0931 0.6531 40 1 7.8687 -7.4381 2.5939 41 1 7.9116 -8.7990 1.3918 42 1 5.7540 -8.4682 3.2821 43 1 5.5091 -9.2199 1.6469 44 1 2.7323 -3.5171 0.7561 45 1 1.0381 -4.0669 0.8264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278747198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:08 Heat of formation + Delta-G solvation = -152.811425 kcal Electronic energy + Delta-G solvation = -30586.264355 eV Core-core repulsion = 25996.753391 eV Total energy + Delta-G solvation = -4589.510964 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.57679 -48.00382 -46.52840 -40.53945 -38.03308 -37.17857 -35.07787 -32.79390 -31.14498 -30.32403 -29.31325 -26.15600 -25.73595 -25.23543 -24.27135 -22.53332 -21.63683 -20.97116 -19.68312 -19.14053 -18.02188 -17.06512 -16.86239 -16.60782 -16.24776 -16.01295 -15.61518 -15.52113 -15.30676 -15.19818 -14.76482 -14.36157 -14.11143 -13.73554 -13.59496 -13.32143 -13.16958 -12.97623 -12.84332 -12.70627 -12.58486 -12.34918 -12.26527 -11.74838 -11.65606 -11.61264 -11.38834 -11.28496 -11.26250 -10.89101 -10.69145 -10.57378 -10.55818 -10.46289 -10.12969 -9.98332 -9.91225 -9.64310 -9.11874 -8.66445 -6.96003 -5.98977 -3.44026 2.45621 3.00004 3.26573 3.34226 3.35768 3.96060 4.11967 4.17079 4.19464 4.32138 4.45165 4.53918 4.58523 4.61384 4.82240 4.84192 4.98386 5.13773 5.20909 5.22251 5.28690 5.35820 5.45710 5.49441 5.55595 5.58571 5.68015 5.72970 5.84788 5.89653 5.94108 6.09752 6.16121 6.21216 6.24897 6.32042 6.36829 6.61917 7.04685 7.38343 7.39766 7.60250 8.09868 8.21151 8.97261 9.59813 10.15017 11.10120 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.003860 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.622446 B = 7252.356545 C = 9194.563648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.008 3.992 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.264 4.264 8 H 0.069 0.931 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.179 4.179 12 C 0.300 3.700 13 F -0.199 7.199 14 F -0.213 7.213 15 C -0.156 4.156 16 H 0.102 0.898 17 C 0.124 3.876 18 N -0.720 5.720 19 C 0.532 3.468 20 O -0.534 6.534 21 C -0.146 4.146 22 C 0.088 3.912 23 F -0.205 7.205 24 C -0.116 4.116 25 C -0.144 4.144 26 C -0.109 4.109 27 C 0.153 3.847 28 H 0.257 0.743 29 H 0.033 0.967 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.403 0.597 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.301 -11.469 0.649 15.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.393 4.393 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.219 4.219 12 C 0.264 3.736 13 F -0.180 7.180 14 F -0.194 7.194 15 C -0.177 4.177 16 H 0.120 0.880 17 C 0.000 4.000 18 N -0.372 5.372 19 C 0.317 3.683 20 O -0.410 6.410 21 C -0.150 4.150 22 C 0.033 3.967 23 F -0.186 7.186 24 C -0.154 4.154 25 C -0.182 4.182 26 C -0.147 4.147 27 C 0.026 3.974 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.238 0.762 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.736 -12.076 0.605 15.524 hybrid contribution 0.421 1.183 -0.135 1.263 sum 10.156 -10.894 0.469 14.901 Atomic orbital electron populations 1.70023 1.05348 1.25969 1.52740 1.25084 0.95292 0.98640 1.00111 0.86244 0.79175 0.83404 0.77734 1.21288 1.21633 1.20260 1.19156 0.92852 0.84497 1.42798 0.91280 1.44088 1.36272 1.01349 1.49454 1.20839 0.89437 0.98206 0.87094 1.23276 1.03414 0.92885 1.02304 1.21024 0.84715 0.87604 0.80289 1.92967 1.57791 1.90946 1.76290 1.92959 1.95037 1.71613 1.59833 1.22981 0.97243 0.96859 1.00639 0.87990 1.21354 0.85894 0.96496 0.96268 1.46018 1.24879 1.11711 1.54577 1.19997 0.85373 0.83686 0.79201 1.90703 1.59815 1.29891 1.60601 1.22840 0.94314 0.99565 0.98281 1.21642 0.80679 0.98026 0.96320 1.92741 1.40347 1.96944 1.88605 1.22874 0.93447 1.01466 0.97634 1.23039 0.96513 0.99490 0.99117 1.22841 0.95498 0.94896 1.01479 1.20907 0.98844 0.86388 0.91267 0.93281 0.94922 0.88171 0.90509 0.89562 0.90547 0.90976 0.76173 0.89743 0.89551 0.89380 0.90154 0.88588 0.91150 0.90820 0.88437 0.91734 0.94909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.34 11.22 55.49 0.62 -23.72 16 2 C 0.01 0.22 4.90 -17.43 -0.09 0.13 16 3 Si 0.90 20.16 29.59 -169.99 -5.03 15.13 16 4 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.26 -6.53 9.58 -15.06 -0.14 -6.67 16 8 H 0.07 1.65 7.89 -52.49 -0.41 1.23 16 9 N -0.59 -13.25 2.99 -172.32 -0.52 -13.77 16 10 C 0.17 3.73 5.11 -3.71 -0.02 3.71 16 11 C -0.18 -3.18 5.62 -26.61 -0.15 -3.33 16 12 C 0.30 5.16 1.63 -26.68 -0.04 5.12 16 13 F -0.20 -3.73 15.73 2.25 0.04 -3.69 16 14 F -0.21 -3.60 16.41 2.25 0.04 -3.56 16 15 C -0.16 -2.43 2.03 -90.50 -0.18 -2.62 16 16 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 17 C 0.12 1.79 4.83 -4.04 -0.02 1.77 16 18 N -0.72 -8.80 5.22 -60.29 -0.31 -9.11 16 19 C 0.53 6.87 6.91 -10.98 -0.08 6.79 16 20 O -0.53 -8.84 15.91 5.56 0.09 -8.75 16 21 C -0.15 -1.47 1.25 -154.85 -0.19 -1.66 16 22 C 0.09 0.80 6.97 37.16 0.26 1.06 16 23 F -0.21 -2.09 14.57 2.25 0.03 -2.06 16 24 C -0.12 -1.04 6.97 -25.83 -0.18 -1.22 16 25 C -0.14 -1.22 7.57 -25.83 -0.20 -1.41 16 26 C -0.11 -1.07 6.96 -25.92 -0.18 -1.25 16 27 C 0.15 2.81 5.40 -3.71 -0.02 2.79 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.03 0.77 7.92 -51.93 -0.41 0.36 16 30 H 0.10 2.44 6.06 -51.93 -0.31 2.12 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.08 1.20 7.97 -51.93 -0.41 0.79 16 34 H 0.07 1.08 7.63 -51.93 -0.40 0.69 16 35 H 0.40 4.20 6.68 -40.82 -0.27 3.93 16 36 H 0.08 0.69 7.11 -51.93 -0.37 0.32 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 40 H 0.10 0.82 6.44 -51.93 -0.33 0.49 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 43 H 0.10 1.07 7.45 -51.93 -0.39 0.68 16 44 H 0.06 1.08 7.13 -51.93 -0.37 0.71 16 45 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -29.03 362.15 -7.42 -36.45 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.60 Total: 4.43 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.23 Total: 3.20 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.21 Total: -46.60 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 0.11 Total: -9.31 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.03 -7.42 -36.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278747198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.365 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds