Wall clock time and date at job start Tue Mar 31 2020 21:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48498 * 109.46689 * 274.06421 * 3 2 1 5 5 H 1.48496 * 109.47199 * 34.06027 * 3 2 1 6 6 H 1.48489 * 109.47235 * 154.06506 * 3 2 1 7 7 C 1.38813 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99624 * 197.50301 * 7 2 1 9 9 N 1.36933 * 120.00029 * 17.50649 * 7 2 1 10 10 C 1.46931 * 120.62776 * 27.98226 * 9 7 2 11 11 C 1.53196 * 108.77478 * 126.36856 * 10 9 7 12 12 C 1.53045 * 109.31014 * 54.63520 * 11 10 9 13 13 F 1.39897 * 109.46327 * 58.65368 * 12 11 10 14 14 F 1.39901 * 109.45947 * 178.62800 * 12 11 10 15 15 C 1.53045 * 109.53734 * 298.63114 * 12 11 10 16 16 H 1.08999 * 109.49508 * 301.42044 * 15 12 11 17 17 C 1.52998 * 109.49862 * 181.31942 * 15 12 11 18 18 N 1.46498 * 109.47076 * 175.16404 * 17 15 12 19 19 C 1.34780 * 119.99612 * 180.02562 * 18 17 15 20 20 O 1.21279 * 120.00180 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99780 * 179.97438 * 19 18 17 22 22 C 1.53003 * 112.84502 * 50.33561 * 21 19 18 23 23 F 1.39910 * 109.46984 * 189.66361 * 22 21 19 24 24 C 1.53772 * 113.61875 * 279.14177 * 21 19 18 25 25 C 1.53960 * 87.02138 * 220.04734 * 24 21 19 26 26 C 1.53777 * 113.61553 * 181.53082 * 21 19 18 27 27 C 1.46924 * 120.63152 * 207.95684 * 9 7 2 28 28 H 0.96995 * 120.00056 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.58122 * 246.15230 * 10 9 7 30 30 H 1.08993 * 109.59226 * 6.58314 * 10 9 7 31 31 H 1.09002 * 109.49676 * 174.58073 * 11 10 9 32 32 H 1.09000 * 109.49978 * 294.68429 * 11 10 9 33 33 H 1.09003 * 109.47061 * 295.16551 * 17 15 12 34 34 H 1.09006 * 109.46883 * 55.16056 * 17 15 12 35 35 H 0.96993 * 120.00221 * 359.97438 * 18 17 15 36 36 H 1.08998 * 109.47550 * 309.66550 * 22 21 19 37 37 H 1.09002 * 109.47213 * 69.66912 * 22 21 19 38 38 H 1.09003 * 113.61321 * 334.56462 * 24 21 19 39 39 H 1.08996 * 113.62156 * 105.46688 * 24 21 19 40 40 H 1.09000 * 113.53613 * 270.81180 * 25 24 21 41 41 H 1.08996 * 113.74297 * 139.94377 * 25 24 21 42 42 H 1.09006 * 113.61157 * 254.53581 * 26 21 19 43 43 H 1.09001 * 113.61389 * 25.34798 * 26 21 19 44 44 H 1.08998 * 109.58475 * 353.42067 * 27 9 7 45 45 H 1.09001 * 109.58659 * 113.84641 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4117 2.0960 -1.3966 5 1 1.4932 2.6264 0.7841 6 1 3.5880 1.4170 0.6123 7 6 2.0103 -1.2021 0.0005 8 1 3.0528 -1.2236 0.2818 9 7 1.3732 -2.3607 -0.3557 10 6 0.2350 -2.3340 -1.2844 11 6 0.5147 -3.3056 -2.4353 12 6 0.8274 -4.6905 -1.8639 13 9 -0.2552 -5.1334 -1.0964 14 9 1.0527 -5.5877 -2.9133 15 6 2.0773 -4.6110 -0.9843 16 1 2.9154 -4.2423 -1.5757 17 6 2.4081 -6.0021 -0.4400 18 7 3.6675 -5.9476 0.3064 19 6 4.1600 -7.0637 0.8794 20 8 3.5607 -8.1131 0.7768 21 6 5.4558 -7.0079 1.6467 22 6 5.4855 -5.8810 2.6812 23 9 6.7814 -5.7515 3.1926 24 6 6.7047 -7.0547 0.7508 25 6 7.3329 -7.9764 1.8121 26 6 5.8995 -8.3698 2.2063 27 6 1.8153 -3.6542 0.1831 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6710 -2.6391 -0.7607 30 1 0.1093 -1.3261 -1.6796 31 1 -0.3618 -3.3676 -3.0803 32 1 1.3677 -2.9494 -3.0130 33 1 1.6076 -6.3331 0.2217 34 1 2.5071 -6.7026 -1.2692 35 1 4.1473 -5.1086 0.3875 36 1 5.1863 -4.9456 2.2084 37 1 4.7964 -6.1146 3.4928 38 1 6.5361 -7.5446 -0.2082 39 1 7.2084 -6.0931 0.6531 40 1 7.8687 -7.4381 2.5939 41 1 7.9116 -8.7990 1.3918 42 1 5.7540 -8.4682 3.2821 43 1 5.5091 -9.2199 1.6469 44 1 2.7323 -3.5171 0.7561 45 1 1.0381 -4.0669 0.8264 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278747198.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:04 Heat of formation + Delta-G solvation = -168.799495 kcal Electronic energy + Delta-G solvation = -30586.957650 eV Core-core repulsion = 25996.753391 eV Total energy + Delta-G solvation = -4590.204259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 8.86 seconds Orbital eigenvalues (eV) -50.00082 -48.75237 -47.95764 -41.50610 -39.23409 -38.41759 -36.41133 -34.41675 -32.52243 -32.01144 -30.20128 -27.33784 -26.95551 -26.59616 -25.20333 -24.04294 -23.08530 -21.99474 -21.16536 -20.03588 -19.10708 -18.60314 -18.29834 -17.78855 -17.09163 -17.06889 -16.95440 -16.83413 -16.55751 -16.27605 -16.08499 -15.49476 -15.44422 -15.24910 -14.81176 -14.66464 -14.48386 -14.29897 -14.26566 -13.82455 -13.47854 -13.43319 -13.25839 -13.18525 -13.15089 -13.03431 -12.99083 -12.61012 -12.26622 -12.21563 -12.16006 -11.96430 -11.90554 -11.64475 -11.36137 -11.28723 -11.17516 -10.79612 -10.56905 -10.23370 -8.80572 -7.90523 -5.37169 1.44358 1.51304 1.54070 1.61670 1.94905 2.50014 2.79090 3.15294 3.18707 3.22995 3.27579 3.38719 3.40862 3.51655 3.58185 3.68318 3.84119 3.90736 4.06400 4.11390 4.24562 4.28239 4.47813 4.49663 4.55684 4.57555 4.66735 4.75040 4.76828 4.82586 4.85237 4.88201 4.97863 5.07038 5.08445 5.16885 5.24845 5.29942 5.46577 5.58816 5.67319 6.33901 6.40174 7.08722 7.08988 7.76620 8.29246 9.17666 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.003860 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.622446 B = 7252.356545 C = 9194.563648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.045 4.045 3 Si 0.965 3.035 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.263 1.263 7 C -0.263 4.263 8 H 0.082 0.918 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.169 4.169 12 C 0.299 3.701 13 F -0.210 7.210 14 F -0.207 7.207 15 C -0.139 4.139 16 H 0.120 0.880 17 C 0.135 3.865 18 N -0.711 5.711 19 C 0.534 3.466 20 O -0.573 6.573 21 C -0.143 4.143 22 C 0.088 3.912 23 F -0.209 7.209 24 C -0.113 4.113 25 C -0.135 4.135 26 C -0.115 4.115 27 C 0.154 3.846 28 H 0.251 0.749 29 H 0.004 0.996 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.414 0.586 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.682 -11.645 0.437 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.241 4.241 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.187 1.187 7 C -0.392 4.392 8 H 0.100 0.900 9 N -0.327 5.327 10 C 0.052 3.948 11 C -0.208 4.208 12 C 0.262 3.738 13 F -0.191 7.191 14 F -0.188 7.188 15 C -0.160 4.160 16 H 0.138 0.862 17 C 0.010 3.990 18 N -0.363 5.363 19 C 0.321 3.679 20 O -0.452 6.452 21 C -0.147 4.147 22 C 0.033 3.967 23 F -0.190 7.190 24 C -0.151 4.151 25 C -0.172 4.172 26 C -0.153 4.153 27 C 0.028 3.972 28 H 0.060 0.940 29 H 0.022 0.978 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.252 0.748 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 12.158 -12.260 0.392 17.270 hybrid contribution -0.351 1.167 -0.052 1.219 sum 11.807 -11.093 0.340 16.204 Atomic orbital electron populations 1.70176 1.06830 1.26053 1.54943 1.25793 0.95860 1.01562 1.00842 0.85283 0.78404 0.79628 0.77282 1.21394 1.22923 1.18729 1.19571 0.93439 0.85206 1.41034 0.90028 1.44316 1.36094 1.02292 1.50034 1.20550 0.88566 0.97686 0.88043 1.23103 1.04713 0.92204 1.00827 1.21077 0.85003 0.87204 0.80525 1.92954 1.58527 1.91030 1.76614 1.92969 1.94975 1.71308 1.59579 1.22784 0.97002 0.96772 0.99425 0.86218 1.21103 0.86477 0.95382 0.96052 1.45912 1.24092 1.12269 1.54009 1.20467 0.85803 0.82967 0.78683 1.90691 1.61127 1.31353 1.62045 1.22869 0.92953 1.00227 0.98603 1.21715 0.80549 0.98110 0.96342 1.92735 1.40719 1.96938 1.88641 1.22899 0.92642 1.02156 0.97407 1.22991 0.95703 0.99638 0.98909 1.22854 0.96538 0.94288 1.01570 1.20984 0.99041 0.84993 0.92175 0.94018 0.97817 0.90881 0.89106 0.88191 0.92057 0.91143 0.74801 0.88440 0.88930 0.89654 0.89014 0.88301 0.90132 0.90362 0.89925 0.89689 0.96547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.74 11.22 21.65 0.24 -51.49 16 2 C -0.04 -2.27 4.90 84.86 0.42 -1.86 16 3 Si 0.97 41.14 29.59 68.60 2.03 43.17 16 4 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 7 C -0.26 -12.69 9.58 84.03 0.81 -11.89 16 8 H 0.08 3.68 7.89 -2.91 -0.02 3.65 16 9 N -0.60 -26.74 2.99 -699.10 -2.09 -28.83 16 10 C 0.18 7.86 5.11 86.36 0.44 8.30 16 11 C -0.17 -5.81 5.62 30.68 0.17 -5.64 16 12 C 0.30 9.83 1.63 30.62 0.05 9.88 16 13 F -0.21 -7.79 15.73 44.97 0.71 -7.08 16 14 F -0.21 -6.56 16.41 44.97 0.74 -5.82 16 15 C -0.14 -4.06 2.03 -10.71 -0.02 -4.08 16 16 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 17 C 0.13 3.67 4.83 86.38 0.42 4.08 16 18 N -0.71 -15.87 5.22 -463.06 -2.42 -18.28 16 19 C 0.53 13.00 6.91 87.66 0.61 13.60 16 20 O -0.57 -18.68 15.91 -3.02 -0.05 -18.73 16 21 C -0.14 -2.60 1.25 -52.40 -0.07 -2.66 16 22 C 0.09 1.38 6.97 71.98 0.50 1.88 16 23 F -0.21 -3.71 14.57 44.97 0.66 -3.06 16 24 C -0.11 -1.75 6.97 31.18 0.22 -1.53 16 25 C -0.14 -1.99 7.57 31.18 0.24 -1.75 16 26 C -0.11 -2.08 6.96 31.12 0.22 -1.87 16 27 C 0.15 5.43 5.40 86.36 0.47 5.89 16 28 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 29 H 0.00 0.18 7.92 -2.39 -0.02 0.16 16 30 H 0.07 3.64 6.06 -2.39 -0.01 3.63 16 31 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 33 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 34 H 0.07 2.00 7.63 -2.38 -0.02 1.98 16 35 H 0.41 7.38 6.68 -92.71 -0.62 6.76 16 36 H 0.10 1.28 7.11 -2.39 -0.02 1.26 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 39 H 0.09 1.23 8.05 -2.39 -0.02 1.21 16 40 H 0.10 1.44 6.44 -2.39 -0.02 1.42 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.32 8.10 -2.38 -0.02 1.31 16 43 H 0.08 1.77 7.45 -2.39 -0.02 1.75 16 44 H 0.08 2.61 7.13 -2.39 -0.02 2.60 16 45 H 0.02 0.64 7.92 -2.39 -0.02 0.63 16 Total: -1.00 -62.40 362.15 4.67 -57.73 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.40 Total: 20.03 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 4.46 Total: 12.36 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -4.27 Total: -98.61 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.05 Total: -18.73 kcal Atomic # 9 Polarization: -18.05 SS G_CDS: 2.10 Total: -15.95 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -62.40 4.67 -57.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278747198.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.067 kcal (2) G-P(sol) polarization free energy of solvation -62.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.86 seconds