Wall clock time and date at job start Tue Mar 31 2020 21:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00128 * 2 1 4 4 H 1.48500 * 109.46975 * 240.00167 * 3 2 1 5 5 H 1.48502 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46796 * 120.00082 * 3 2 1 7 7 C 1.38811 * 119.99409 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99467 * 163.08246 * 7 2 1 9 9 N 1.36936 * 120.00615 * 343.07982 * 7 2 1 10 10 C 1.46927 * 120.62571 * 331.82709 * 9 7 2 11 11 C 1.53193 * 108.77302 * 233.60427 * 10 9 7 12 12 C 1.53037 * 109.31725 * 305.37049 * 11 10 9 13 13 F 1.39904 * 109.45894 * 301.34256 * 12 11 10 14 14 F 1.39896 * 109.44937 * 181.37816 * 12 11 10 15 15 C 1.53033 * 109.53845 * 61.36476 * 12 11 10 16 16 H 1.08994 * 109.50123 * 58.61582 * 15 12 11 17 17 C 1.52999 * 109.49792 * 178.68510 * 15 12 11 18 18 N 1.46506 * 109.47142 * 184.93383 * 17 15 12 19 19 C 1.34778 * 119.99754 * 180.02562 * 18 17 15 20 20 O 1.21280 * 120.00048 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99554 * 179.97438 * 19 18 17 22 22 C 1.53001 * 112.85086 * 50.33277 * 21 19 18 23 23 F 1.39897 * 109.47213 * 309.66644 * 22 21 19 24 24 C 1.53777 * 113.61597 * 279.13577 * 21 19 18 25 25 C 1.53951 * 87.02040 * 220.05270 * 24 21 19 26 26 C 1.53777 * 87.11480 * 25.36353 * 25 24 21 27 27 C 1.46926 * 120.60571 * 151.84739 * 9 7 2 28 28 H 0.97003 * 120.00276 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.58487 * 113.82313 * 10 9 7 30 30 H 1.08997 * 109.58800 * 353.39382 * 10 9 7 31 31 H 1.09008 * 109.49767 * 185.41162 * 11 10 9 32 32 H 1.09008 * 109.49598 * 65.32397 * 11 10 9 33 33 H 1.09005 * 109.47040 * 64.93405 * 17 15 12 34 34 H 1.08995 * 109.47202 * 304.93561 * 17 15 12 35 35 H 0.97002 * 119.99810 * 359.97438 * 18 17 15 36 36 H 1.09004 * 109.46931 * 69.66407 * 22 21 19 37 37 H 1.08997 * 109.46938 * 189.66534 * 22 21 19 38 38 H 1.09003 * 113.61377 * 334.56845 * 24 21 19 39 39 H 1.08994 * 113.61482 * 105.47369 * 24 21 19 40 40 H 1.08999 * 113.53476 * 270.81059 * 25 24 21 41 41 H 1.09006 * 113.74753 * 139.94349 * 25 24 21 42 42 H 1.09005 * 113.61838 * 220.09825 * 26 25 24 43 43 H 1.08999 * 113.69291 * 89.19857 * 26 25 24 44 44 H 1.09001 * 109.61649 * 6.62513 * 27 9 7 45 45 H 1.09001 * 109.56592 * 246.19202 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2727 9 7 1.3699 -2.3626 0.3441 10 6 0.2261 -2.3410 1.2660 11 6 0.4978 -3.3210 2.4117 12 6 0.8124 -4.7022 1.8326 13 9 -0.2661 -5.1384 1.0555 14 9 1.0302 -5.6068 2.8773 15 6 2.0676 -4.6180 0.9612 16 1 2.9027 -4.2551 1.5602 17 6 2.4001 -6.0057 0.4092 18 7 3.6653 -5.9480 -0.3272 19 6 4.1596 -7.0605 -0.9056 20 8 3.5573 -8.1094 -0.8160 21 6 5.4608 -7.0011 -1.6636 22 6 6.5827 -6.3325 -0.8665 23 9 6.1312 -5.1079 -0.3631 24 6 5.3154 -6.4596 -3.0955 25 6 6.3290 -7.5377 -3.5202 26 6 5.8683 -8.3433 -2.2940 27 6 1.8145 -3.6525 -0.2011 28 1 -0.4851 0.8400 0.0004 29 1 -0.6771 -2.6413 0.7348 30 1 0.0992 -1.3356 1.6675 31 1 -0.3827 -3.3864 3.0511 32 1 1.3476 -2.9697 2.9971 33 1 1.6041 -6.3304 -0.2610 34 1 2.4916 -6.7124 1.2339 35 1 4.1468 -5.1090 -0.3991 36 1 6.8761 -6.9793 -0.0397 37 1 7.4402 -6.1637 -1.5178 38 1 4.3211 -6.6045 -3.5182 39 1 5.6836 -5.4409 -3.2166 40 1 7.3661 -7.2075 -3.4611 41 1 6.0901 -8.0147 -4.4708 42 1 6.6823 -8.8430 -1.7688 43 1 5.0257 -9.0046 -2.4958 44 1 2.7354 -3.5127 -0.7671 45 1 1.0410 -4.0596 -0.8524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278747199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:04 Heat of formation + Delta-G solvation = -152.677245 kcal Electronic energy + Delta-G solvation = -30873.767891 eV Core-core repulsion = 26284.262746 eV Total energy + Delta-G solvation = -4589.505146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 7.21 seconds Orbital eigenvalues (eV) -48.50482 -48.02620 -46.45641 -40.50847 -38.15502 -37.14806 -34.91672 -32.67087 -30.95790 -30.22048 -29.08843 -26.25377 -25.80318 -25.18886 -24.38744 -22.47137 -21.56298 -20.85626 -19.63655 -19.12158 -17.69735 -16.98501 -16.78877 -16.57570 -16.22742 -15.93320 -15.73458 -15.41743 -15.27811 -15.02125 -14.69197 -14.45838 -14.20120 -13.97271 -13.56703 -13.24959 -13.10385 -12.86701 -12.77165 -12.73953 -12.37694 -12.17806 -12.11174 -11.65955 -11.63091 -11.52772 -11.50344 -11.27938 -11.21294 -10.80767 -10.69562 -10.68993 -10.59269 -10.52807 -10.05279 -9.91957 -9.81019 -9.54215 -8.94495 -8.59437 -6.87842 -5.92099 -3.36811 2.57361 3.15210 3.31960 3.38571 3.39035 3.97208 4.05053 4.18283 4.23958 4.38770 4.43676 4.56203 4.64410 4.68735 4.74584 4.86889 4.93449 5.06491 5.23593 5.29572 5.32789 5.42099 5.44076 5.51073 5.57997 5.62285 5.68111 5.69131 5.76764 5.94804 6.03155 6.05263 6.17785 6.28532 6.36481 6.46300 6.49394 6.71803 7.11673 7.45910 7.59634 7.67379 8.25603 8.28733 9.04825 9.67055 10.22723 11.17117 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.004070 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.324416 B = 6878.044204 C = 8539.827148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.261 4.261 8 H 0.069 0.931 9 N -0.590 5.590 10 C 0.171 3.829 11 C -0.179 4.179 12 C 0.300 3.700 13 F -0.199 7.199 14 F -0.214 7.214 15 C -0.155 4.155 16 H 0.102 0.898 17 C 0.123 3.877 18 N -0.716 5.716 19 C 0.527 3.473 20 O -0.542 6.542 21 C -0.148 4.148 22 C 0.088 3.912 23 F -0.205 7.205 24 C -0.118 4.118 25 C -0.143 4.143 26 C -0.105 4.105 27 C 0.154 3.846 28 H 0.257 0.743 29 H 0.032 0.968 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.059 -12.517 -2.081 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.192 4.192 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.219 4.219 12 C 0.264 3.736 13 F -0.180 7.180 14 F -0.195 7.195 15 C -0.176 4.176 16 H 0.120 0.880 17 C -0.001 4.001 18 N -0.371 5.371 19 C 0.312 3.688 20 O -0.420 6.420 21 C -0.152 4.152 22 C 0.033 3.967 23 F -0.186 7.186 24 C -0.156 4.156 25 C -0.180 4.180 26 C -0.143 4.143 27 C 0.027 3.973 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.249 0.751 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 11.462 -13.066 -2.008 17.497 hybrid contribution 0.417 1.183 0.188 1.268 sum 11.879 -11.883 -1.820 16.900 Atomic orbital electron populations 1.70010 1.05319 1.25989 1.53002 1.25079 0.95301 0.98578 1.00246 0.86332 0.78922 0.83043 0.78238 1.20747 1.21550 1.20873 1.19125 0.92651 0.84426 1.42841 0.91348 1.44077 1.35733 1.01501 1.49848 1.20836 0.89368 0.98067 0.87262 1.23277 1.03338 0.92997 1.02268 1.21033 0.84872 0.87463 0.80276 1.92964 1.58119 1.91142 1.75821 1.92952 1.95174 1.71198 1.60153 1.22956 0.97050 0.96958 1.00644 0.88005 1.21323 0.86036 0.96416 0.96325 1.46281 1.24291 1.12661 1.53818 1.20080 0.86219 0.83723 0.78752 1.90683 1.60870 1.29993 1.60445 1.22876 0.94229 1.01414 0.96644 1.21768 0.95312 0.81470 0.98180 1.92696 1.90332 1.46393 1.89166 1.22946 1.01138 0.99730 0.91802 1.22924 0.99102 0.97244 0.98732 1.22787 1.01946 0.93998 0.95565 1.20904 0.98863 0.86264 0.91287 0.93299 0.94976 0.88148 0.90558 0.89572 0.90791 0.91164 0.75093 0.89868 0.89247 0.88982 0.90006 0.89774 0.90545 0.90696 0.88037 0.91616 0.95026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.00 11.20 55.49 0.62 -24.38 16 2 C 0.01 0.19 4.92 -17.43 -0.09 0.11 16 3 Si 0.91 20.71 29.59 -169.99 -5.03 15.68 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.74 9.58 -15.06 -0.14 -6.89 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -13.95 2.99 -172.31 -0.52 -14.47 16 10 C 0.17 3.90 5.10 -3.71 -0.02 3.88 16 11 C -0.18 -3.35 5.62 -26.61 -0.15 -3.50 16 12 C 0.30 5.49 1.63 -26.70 -0.04 5.45 16 13 F -0.20 -3.92 15.73 2.25 0.04 -3.89 16 14 F -0.21 -3.81 16.41 2.25 0.04 -3.77 16 15 C -0.15 -2.67 2.03 -90.50 -0.18 -2.85 16 16 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 17 C 0.12 1.99 4.83 -4.04 -0.02 1.97 16 18 N -0.72 -10.34 5.04 -60.29 -0.30 -10.64 16 19 C 0.53 7.48 6.91 -10.98 -0.08 7.41 16 20 O -0.54 -9.47 15.91 5.56 0.09 -9.38 16 21 C -0.15 -1.49 1.14 -154.84 -0.18 -1.66 16 22 C 0.09 0.73 6.85 37.16 0.25 0.99 16 23 F -0.20 -2.31 14.59 2.25 0.03 -2.28 16 24 C -0.12 -1.06 7.21 -25.83 -0.19 -1.24 16 25 C -0.14 -0.97 7.74 -25.83 -0.20 -1.17 16 26 C -0.11 -0.90 6.99 -25.92 -0.18 -1.08 16 27 C 0.15 3.07 5.40 -3.70 -0.02 3.05 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 30 H 0.10 2.52 6.06 -51.93 -0.31 2.21 16 31 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 33 H 0.07 1.28 7.97 -51.93 -0.41 0.86 16 34 H 0.07 1.16 7.63 -51.93 -0.40 0.76 16 35 H 0.41 5.65 5.29 -40.82 -0.22 5.43 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.51 7.34 -51.93 -0.38 0.13 16 38 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 39 H 0.08 0.69 8.10 -51.93 -0.42 0.26 16 40 H 0.08 0.44 7.64 -51.93 -0.40 0.04 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 43 H 0.10 1.04 7.45 -51.93 -0.39 0.66 16 44 H 0.07 1.24 7.14 -51.93 -0.37 0.87 16 45 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 LS Contribution 362.27 15.07 5.46 5.46 Total: -1.00 -30.16 362.27 -7.43 -37.59 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.62 Total: 5.62 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.23 Total: 4.46 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.20 Total: -49.49 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 9 Polarization: -10.04 SS G_CDS: 0.11 Total: -9.94 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.16 -7.43 -37.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278747199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.092 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.22 seconds