Wall clock time and date at job start Tue Mar 31 2020 21:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00128 * 2 1 4 4 H 1.48500 * 109.46975 * 240.00167 * 3 2 1 5 5 H 1.48502 * 109.47135 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46796 * 120.00082 * 3 2 1 7 7 C 1.38811 * 119.99409 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99467 * 163.08246 * 7 2 1 9 9 N 1.36936 * 120.00615 * 343.07982 * 7 2 1 10 10 C 1.46927 * 120.62571 * 331.82709 * 9 7 2 11 11 C 1.53193 * 108.77302 * 233.60427 * 10 9 7 12 12 C 1.53037 * 109.31725 * 305.37049 * 11 10 9 13 13 F 1.39904 * 109.45894 * 301.34256 * 12 11 10 14 14 F 1.39896 * 109.44937 * 181.37816 * 12 11 10 15 15 C 1.53033 * 109.53845 * 61.36476 * 12 11 10 16 16 H 1.08994 * 109.50123 * 58.61582 * 15 12 11 17 17 C 1.52999 * 109.49792 * 178.68510 * 15 12 11 18 18 N 1.46506 * 109.47142 * 184.93383 * 17 15 12 19 19 C 1.34778 * 119.99754 * 180.02562 * 18 17 15 20 20 O 1.21280 * 120.00048 * 359.97438 * 19 18 17 21 21 C 1.50702 * 119.99554 * 179.97438 * 19 18 17 22 22 C 1.53001 * 112.85086 * 50.33277 * 21 19 18 23 23 F 1.39897 * 109.47213 * 309.66644 * 22 21 19 24 24 C 1.53777 * 113.61597 * 279.13577 * 21 19 18 25 25 C 1.53951 * 87.02040 * 220.05270 * 24 21 19 26 26 C 1.53777 * 87.11480 * 25.36353 * 25 24 21 27 27 C 1.46926 * 120.60571 * 151.84739 * 9 7 2 28 28 H 0.97003 * 120.00276 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.58487 * 113.82313 * 10 9 7 30 30 H 1.08997 * 109.58800 * 353.39382 * 10 9 7 31 31 H 1.09008 * 109.49767 * 185.41162 * 11 10 9 32 32 H 1.09008 * 109.49598 * 65.32397 * 11 10 9 33 33 H 1.09005 * 109.47040 * 64.93405 * 17 15 12 34 34 H 1.08995 * 109.47202 * 304.93561 * 17 15 12 35 35 H 0.97002 * 119.99810 * 359.97438 * 18 17 15 36 36 H 1.09004 * 109.46931 * 69.66407 * 22 21 19 37 37 H 1.08997 * 109.46938 * 189.66534 * 22 21 19 38 38 H 1.09003 * 113.61377 * 334.56845 * 24 21 19 39 39 H 1.08994 * 113.61482 * 105.47369 * 24 21 19 40 40 H 1.08999 * 113.53476 * 270.81059 * 25 24 21 41 41 H 1.09006 * 113.74753 * 139.94349 * 25 24 21 42 42 H 1.09005 * 113.61838 * 220.09825 * 26 25 24 43 43 H 1.08999 * 113.69291 * 89.19857 * 26 25 24 44 44 H 1.09001 * 109.61649 * 6.62513 * 27 9 7 45 45 H 1.09001 * 109.56592 * 246.19202 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6962 1.2125 7 6 2.0101 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2727 9 7 1.3699 -2.3626 0.3441 10 6 0.2261 -2.3410 1.2660 11 6 0.4978 -3.3210 2.4117 12 6 0.8124 -4.7022 1.8326 13 9 -0.2661 -5.1384 1.0555 14 9 1.0302 -5.6068 2.8773 15 6 2.0676 -4.6180 0.9612 16 1 2.9027 -4.2551 1.5602 17 6 2.4001 -6.0057 0.4092 18 7 3.6653 -5.9480 -0.3272 19 6 4.1596 -7.0605 -0.9056 20 8 3.5573 -8.1094 -0.8160 21 6 5.4608 -7.0011 -1.6636 22 6 6.5827 -6.3325 -0.8665 23 9 6.1312 -5.1079 -0.3631 24 6 5.3154 -6.4596 -3.0955 25 6 6.3290 -7.5377 -3.5202 26 6 5.8683 -8.3433 -2.2940 27 6 1.8145 -3.6525 -0.2011 28 1 -0.4851 0.8400 0.0004 29 1 -0.6771 -2.6413 0.7348 30 1 0.0992 -1.3356 1.6675 31 1 -0.3827 -3.3864 3.0511 32 1 1.3476 -2.9697 2.9971 33 1 1.6041 -6.3304 -0.2610 34 1 2.4916 -6.7124 1.2339 35 1 4.1468 -5.1090 -0.3991 36 1 6.8761 -6.9793 -0.0397 37 1 7.4402 -6.1637 -1.5178 38 1 4.3211 -6.6045 -3.5182 39 1 5.6836 -5.4409 -3.2166 40 1 7.3661 -7.2075 -3.4611 41 1 6.0901 -8.0147 -4.4708 42 1 6.6823 -8.8430 -1.7688 43 1 5.0257 -9.0046 -2.4958 44 1 2.7354 -3.5127 -0.7671 45 1 1.0410 -4.0596 -0.8524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278747199.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:35 Heat of formation + Delta-G solvation = -169.797578 kcal Electronic energy + Delta-G solvation = -30874.510284 eV Core-core repulsion = 26284.262746 eV Total energy + Delta-G solvation = -4590.247539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 14.45 seconds Orbital eigenvalues (eV) -50.03040 -48.77789 -47.98507 -41.47082 -39.34564 -38.55233 -36.36860 -34.39818 -32.45146 -32.01269 -29.87154 -27.48083 -27.00162 -26.58428 -25.35986 -24.08342 -23.08355 -21.97147 -21.20189 -20.04992 -18.98802 -18.44132 -18.30072 -17.80105 -17.09974 -17.07676 -16.97813 -16.84206 -16.49835 -16.28925 -16.11082 -15.49544 -15.41814 -15.23655 -15.08403 -14.83370 -14.66108 -14.32092 -14.29494 -13.84202 -13.46915 -13.29726 -13.25102 -13.16124 -13.07749 -13.00067 -12.83860 -12.56022 -12.32397 -12.25142 -12.21201 -11.97829 -11.92820 -11.67904 -11.39711 -11.34822 -11.29890 -10.71278 -10.56897 -10.19996 -8.81745 -7.91498 -5.38917 1.48100 1.51119 1.53332 1.59791 2.02119 2.49360 2.76543 3.12998 3.20583 3.22424 3.25318 3.36569 3.46954 3.48964 3.56029 3.77278 3.83606 3.87971 4.04412 4.09914 4.19814 4.29435 4.42584 4.45277 4.54149 4.60166 4.70758 4.73821 4.76076 4.80567 4.85097 4.85885 5.02524 5.04764 5.11061 5.12041 5.26478 5.30228 5.45226 5.56627 5.64921 6.32798 6.45386 7.07601 7.12376 7.74473 8.27636 9.16523 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.004070 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.324416 B = 6878.044204 C = 8539.827148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.043 4.043 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.267 4.267 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.169 4.169 12 C 0.300 3.700 13 F -0.209 7.209 14 F -0.206 7.206 15 C -0.138 4.138 16 H 0.114 0.886 17 C 0.133 3.867 18 N -0.713 5.713 19 C 0.521 3.479 20 O -0.581 6.581 21 C -0.149 4.149 22 C 0.084 3.916 23 F -0.222 7.222 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.106 4.106 27 C 0.158 3.842 28 H 0.252 0.748 29 H 0.005 0.995 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.414 0.586 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.012 -12.812 -2.054 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.239 4.239 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.397 4.397 8 H 0.094 0.906 9 N -0.327 5.327 10 C 0.052 3.948 11 C -0.208 4.208 12 C 0.263 3.737 13 F -0.190 7.190 14 F -0.187 7.187 15 C -0.160 4.160 16 H 0.132 0.868 17 C 0.008 3.992 18 N -0.368 5.368 19 C 0.308 3.692 20 O -0.461 6.461 21 C -0.152 4.152 22 C 0.030 3.970 23 F -0.203 7.203 24 C -0.162 4.162 25 C -0.162 4.162 26 C -0.144 4.144 27 C 0.031 3.969 28 H 0.061 0.939 29 H 0.023 0.977 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.255 0.745 36 H 0.114 0.886 37 H 0.143 0.857 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 14.446 -13.376 -1.983 19.787 hybrid contribution -0.547 1.203 0.152 1.330 sum 13.899 -12.172 -1.831 18.566 Atomic orbital electron populations 1.70167 1.06780 1.26237 1.54713 1.25818 0.95947 1.01584 1.00580 0.85327 0.77534 0.78979 0.78498 1.20025 1.22378 1.20100 1.19494 0.93125 0.85251 1.41828 0.90582 1.44304 1.35698 1.02250 1.50485 1.20569 0.88383 0.97718 0.88097 1.23111 1.04779 0.92079 1.00852 1.21044 0.84930 0.87262 0.80432 1.92952 1.58716 1.91227 1.76146 1.92964 1.95109 1.70876 1.59794 1.22752 0.96947 0.96780 0.99484 0.86776 1.21091 0.86635 0.95401 0.96093 1.46304 1.23606 1.13226 1.53696 1.20940 0.87364 0.82770 0.78109 1.90660 1.62336 1.31276 1.61797 1.23054 0.92478 1.03086 0.96618 1.22048 0.95265 0.80633 0.99082 1.92655 1.90575 1.47615 1.89487 1.22993 1.01112 1.01019 0.91077 1.22915 0.99790 0.95371 0.98093 1.22785 1.01777 0.93219 0.96617 1.20910 0.98598 0.85238 0.92115 0.93887 0.97696 0.90606 0.88751 0.88279 0.92355 0.91249 0.74527 0.88637 0.85679 0.90905 0.89162 0.86986 0.89954 0.88635 0.90462 0.90569 0.96664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.98 11.20 21.65 0.24 -52.74 16 2 C -0.04 -2.29 4.92 84.86 0.42 -1.87 16 3 Si 0.97 42.46 29.59 68.60 2.03 44.49 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 5 H -0.30 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.27 -13.73 9.58 84.03 0.81 -12.92 16 8 H 0.08 3.72 7.89 -2.91 -0.02 3.70 16 9 N -0.60 -28.72 2.99 -699.06 -2.09 -30.82 16 10 C 0.18 8.28 5.10 86.36 0.44 8.72 16 11 C -0.17 -6.18 5.62 30.67 0.17 -6.01 16 12 C 0.30 10.74 1.63 30.62 0.05 10.79 16 13 F -0.21 -8.27 15.73 44.97 0.71 -7.56 16 14 F -0.21 -7.04 16.41 44.97 0.74 -6.30 16 15 C -0.14 -4.67 2.03 -10.72 -0.02 -4.69 16 16 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 17 C 0.13 4.25 4.83 86.38 0.42 4.67 16 18 N -0.71 -20.18 5.04 -463.04 -2.33 -22.52 16 19 C 0.52 14.56 6.91 87.66 0.61 15.17 16 20 O -0.58 -20.52 15.91 -3.03 -0.05 -20.56 16 21 C -0.15 -2.72 1.14 -52.40 -0.06 -2.78 16 22 C 0.08 1.14 6.85 71.98 0.49 1.64 16 23 F -0.22 -4.48 14.59 44.97 0.66 -3.82 16 24 C -0.12 -2.00 7.21 31.18 0.22 -1.78 16 25 C -0.12 -1.31 7.74 31.18 0.24 -1.07 16 26 C -0.11 -1.60 6.99 31.12 0.22 -1.38 16 27 C 0.16 6.27 5.40 86.37 0.47 6.74 16 28 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.00 0.25 7.92 -2.39 -0.02 0.23 16 30 H 0.08 3.90 6.06 -2.39 -0.01 3.89 16 31 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 32 H 0.10 3.40 8.14 -2.38 -0.02 3.39 16 33 H 0.06 2.05 7.97 -2.38 -0.02 2.03 16 34 H 0.07 2.26 7.63 -2.39 -0.02 2.24 16 35 H 0.41 10.95 5.29 -92.71 -0.49 10.46 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.13 0.85 7.34 -2.39 -0.02 0.83 16 38 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 39 H 0.09 1.30 8.10 -2.39 -0.02 1.28 16 40 H 0.11 0.61 7.64 -2.39 -0.02 0.60 16 41 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.10 1.03 8.10 -2.38 -0.02 1.01 16 43 H 0.08 1.56 7.45 -2.39 -0.02 1.54 16 44 H 0.08 2.84 7.14 -2.39 -0.02 2.82 16 45 H 0.02 0.66 7.92 -2.39 -0.02 0.65 16 Total: -1.00 -66.14 362.27 4.89 -61.25 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.52 Total: 23.35 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 4.47 Total: 15.22 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -4.18 Total: -106.07 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 9 Polarization: -19.78 SS G_CDS: 2.10 Total: -17.68 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.14 4.89 -61.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278747199.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.545 kcal (2) G-P(sol) polarization free energy of solvation -66.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.46 seconds