Wall clock time and date at job start Tue Mar 31 2020 21:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99545 * 2 1 4 4 H 1.48507 * 109.47266 * 269.99957 * 3 2 1 5 5 H 1.48499 * 109.47563 * 30.00098 * 3 2 1 6 6 H 1.48502 * 109.47299 * 149.99926 * 3 2 1 7 7 C 1.38807 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00205 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00373 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00446 * 179.72651 * 9 7 2 11 11 C 1.52995 * 109.47506 * 180.27562 * 10 9 7 12 12 N 1.46493 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.46507 * 120.00071 * 89.99897 * 12 11 10 14 14 C 1.52999 * 109.47288 * 83.67576 * 13 12 11 15 15 O 1.42898 * 109.46897 * 65.00175 * 14 13 12 16 16 C 1.34779 * 120.00403 * 270.00028 * 12 11 10 17 17 O 1.21278 * 119.99719 * 3.73570 * 16 12 11 18 18 C 1.50699 * 120.00041 * 183.73752 * 16 12 11 19 19 H 1.08995 * 109.33913 * 29.60033 * 18 16 12 20 20 O 1.42723 * 109.33650 * 149.11478 * 18 16 12 21 21 C 1.43212 * 113.14308 * 172.00038 * 20 18 16 22 22 C 1.52968 * 108.47907 * 289.33828 * 21 20 18 23 23 C 1.50744 * 109.76301 * 49.22543 * 22 21 20 24 24 C 1.38591 * 118.76241 * 163.20990 * 23 22 21 25 25 C 1.38071 * 120.27252 * 179.52681 * 24 23 22 26 26 C 1.38258 * 119.86376 * 0.02562 * 25 24 23 27 27 C 1.38055 * 119.89593 * 0.08615 * 26 25 24 28 28 C 1.37906 * 121.34919 * 342.91767 * 23 22 21 29 29 H 0.97000 * 120.00533 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99560 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46939 * 300.27387 * 10 9 7 32 32 H 1.08997 * 109.47407 * 60.27123 * 10 9 7 33 33 H 1.09003 * 109.46878 * 299.99862 * 11 10 9 34 34 H 1.09005 * 109.47063 * 59.99679 * 11 10 9 35 35 H 1.08999 * 109.47319 * 203.68412 * 13 12 11 36 36 H 1.08999 * 109.46866 * 323.67510 * 13 12 11 37 37 H 1.08997 * 109.46938 * 185.00008 * 14 13 12 38 38 H 1.08997 * 109.46808 * 305.00469 * 14 13 12 39 39 H 0.96703 * 114.00475 * 179.97438 * 15 14 13 40 40 H 1.09006 * 109.63361 * 169.64236 * 21 20 18 41 41 H 1.08992 * 109.80031 * 49.13628 * 21 20 18 42 42 H 1.08997 * 109.42261 * 289.13383 * 22 21 20 43 43 H 1.08998 * 109.41813 * 169.31637 * 22 21 20 44 44 H 1.08003 * 119.86602 * 359.52379 * 24 23 22 45 45 H 1.08003 * 120.06706 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.05389 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.84934 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 -0.0050 11 6 1.0641 -4.8197 -0.0107 12 7 1.7966 -6.0883 -0.0168 13 6 2.1628 -6.7288 1.2489 14 6 0.9798 -7.5499 1.7660 15 8 0.7141 -8.6240 0.8618 16 6 2.1337 -6.6663 -1.1868 17 8 1.8908 -6.1035 -2.2332 18 6 2.8123 -8.0118 -1.1945 19 1 2.4958 -8.5808 -0.3204 20 8 2.4415 -8.7213 -2.3761 21 6 3.1796 -9.9349 -2.5589 22 6 4.6210 -9.5755 -2.9237 23 6 5.1525 -8.5522 -1.9527 24 6 6.5216 -8.3505 -1.8794 25 6 7.0416 -7.4142 -1.0080 26 6 6.1929 -6.6751 -0.2048 27 6 4.8290 -6.8771 -0.2756 28 6 4.3057 -7.8176 -1.1494 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.6852 -3.7104 -0.8950 32 1 2.6845 -3.7185 0.8849 33 1 0.4371 -4.7660 0.8793 34 1 0.4377 -4.7579 -0.9007 35 1 3.0186 -7.3848 1.0899 36 1 2.4222 -5.9644 1.9813 37 1 1.2202 -7.9539 2.7494 38 1 0.0995 -6.9116 1.8406 39 1 -0.0252 -9.1880 1.1273 40 1 2.7324 -10.5178 -3.3642 41 1 3.1690 -10.5159 -1.6368 42 1 4.6479 -9.1655 -3.9332 43 1 5.2399 -10.4717 -2.8807 44 1 7.1847 -8.9281 -2.5064 45 1 8.1092 -7.2600 -0.9532 46 1 6.5962 -5.9416 0.4776 47 1 4.1667 -6.2997 0.3524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279783767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:24 Heat of formation + Delta-G solvation = -73.881850 kcal Electronic energy + Delta-G solvation = -29999.161065 eV Core-core repulsion = 25954.929485 eV Total energy + Delta-G solvation = -4044.231581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 20.85 seconds Orbital eigenvalues (eV) -41.05150 -39.23018 -37.70732 -37.17048 -35.60323 -34.37489 -33.23762 -32.12772 -31.27364 -29.71668 -29.47188 -27.88296 -25.99952 -24.07180 -23.83506 -23.08776 -22.57235 -21.37019 -20.33596 -19.01363 -18.02052 -17.70285 -17.14807 -17.03248 -16.51907 -15.77445 -15.67630 -15.30536 -15.16023 -14.65318 -14.52404 -14.19447 -14.02110 -13.80018 -13.71064 -13.55126 -13.23363 -13.16783 -12.86980 -12.72674 -12.67840 -12.27057 -12.12993 -11.92923 -11.70506 -11.29488 -11.13538 -10.97246 -10.87037 -10.79920 -10.65520 -10.26349 -10.08936 -9.78719 -9.73865 -9.62915 -8.90717 -8.84311 -8.68923 -8.51358 -6.90150 -5.73237 -3.02319 1.11781 1.20602 2.63945 2.90176 3.46704 3.51593 3.52947 3.56343 3.86322 3.98558 4.38436 4.44100 4.57654 4.63382 4.63865 4.77481 4.86582 4.88630 4.95996 5.02179 5.14549 5.22220 5.26316 5.32315 5.38087 5.46253 5.50740 5.54764 5.56486 5.66419 5.68420 5.80003 5.84934 5.89800 6.05283 6.14977 6.25604 6.35436 6.36515 6.56845 6.73603 6.81199 6.91473 6.96965 7.38187 7.49180 7.73269 8.36425 8.45429 9.56209 10.12378 10.47555 11.49729 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012751 B = 0.003355 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.354069 B = 8344.647315 C = 9392.985290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.142 3.858 11 C 0.110 3.890 12 N -0.603 5.603 13 C 0.093 3.907 14 C 0.055 3.945 15 O -0.569 6.569 16 C 0.535 3.465 17 O -0.508 6.508 18 C 0.115 3.885 19 H 0.111 0.889 20 O -0.348 6.348 21 C 0.060 3.940 22 C -0.117 4.117 23 C -0.068 4.068 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.117 4.117 28 C -0.110 4.110 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.024 0.976 32 H 0.017 0.983 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.379 0.621 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.057 -26.159 3.581 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.014 3.986 11 C -0.012 4.012 12 N -0.338 5.338 13 C -0.031 4.031 14 C -0.024 4.024 15 O -0.376 6.376 16 C 0.321 3.679 17 O -0.381 6.381 18 C 0.054 3.946 19 H 0.128 0.872 20 O -0.265 6.265 21 C -0.017 4.017 22 C -0.154 4.154 23 C -0.068 4.068 24 C -0.137 4.137 25 C -0.133 4.133 26 C -0.134 4.134 27 C -0.134 4.134 28 C -0.111 4.111 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.227 0.773 40 H 0.121 0.879 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.406 -25.386 2.548 27.192 hybrid contribution -0.016 0.724 0.599 0.940 sum 9.390 -24.662 3.147 26.576 Atomic orbital electron populations 1.69660 1.05097 1.25653 1.57821 1.24736 0.95544 0.97668 1.03003 0.86173 0.78582 0.83752 0.77582 1.21666 1.21757 1.20779 1.19203 0.91005 0.83979 1.42632 0.91224 1.42202 1.05844 0.99771 1.89625 1.20917 0.93921 0.85673 0.98131 1.21714 0.94748 0.81417 1.03332 1.47723 1.57842 1.23283 1.04917 1.22001 0.97030 0.96968 0.87069 1.22698 0.98663 0.89003 0.92046 1.86452 1.56099 1.43569 1.51434 1.19824 0.78623 0.85789 0.83707 1.90742 1.52414 1.63743 1.31178 1.20908 0.89775 0.93015 0.90917 0.87162 1.88160 1.60579 1.35508 1.42293 1.22653 0.90861 0.86603 1.01586 1.21165 0.97311 0.97839 0.99078 1.19441 0.93254 0.97543 0.96541 1.21034 0.94128 0.99163 0.99386 1.21149 0.99839 0.96060 0.96208 1.21127 0.93202 0.99433 0.99631 1.21380 0.96177 0.97230 0.98658 1.19889 0.94714 0.98234 0.98240 0.93505 0.78269 0.95771 0.96518 0.90422 0.89616 0.89131 0.88027 0.92460 0.92602 0.77302 0.87916 0.92466 0.89388 0.89620 0.85874 0.85824 0.85533 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.96 29.55 -169.99 -5.02 17.94 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -19.31 5.60 -59.92 -0.34 -19.65 16 10 C 0.14 3.06 6.58 -4.05 -0.03 3.04 16 11 C 0.11 1.95 5.51 -4.05 -0.02 1.93 16 12 N -0.60 -9.08 2.09 -173.69 -0.36 -9.45 16 13 C 0.09 0.98 4.21 -4.04 -0.02 0.96 16 14 C 0.05 0.46 7.38 37.16 0.27 0.74 16 15 O -0.57 -5.15 11.27 -35.23 -0.40 -5.55 16 16 C 0.53 9.44 5.91 -10.98 -0.06 9.37 16 17 O -0.51 -11.48 16.36 -12.26 -0.20 -11.68 16 18 C 0.11 1.66 2.32 -29.06 -0.07 1.59 16 19 H 0.11 1.40 4.55 -51.93 -0.24 1.16 16 20 O -0.35 -5.27 10.14 -53.06 -0.54 -5.81 16 21 C 0.06 0.60 6.84 37.14 0.25 0.86 16 22 C -0.12 -1.12 6.00 -27.88 -0.17 -1.28 16 23 C -0.07 -0.81 5.78 -104.59 -0.60 -1.41 16 24 C -0.12 -1.24 9.67 -39.51 -0.38 -1.62 16 25 C -0.11 -1.18 10.05 -39.64 -0.40 -1.58 16 26 C -0.12 -1.33 10.05 -39.64 -0.40 -1.72 16 27 C -0.12 -1.51 8.11 -39.50 -0.32 -1.83 16 28 C -0.11 -1.50 5.39 -104.62 -0.56 -2.06 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.38 10.52 7.67 -40.82 -0.31 10.21 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 1.21 7.98 -51.93 -0.41 0.80 16 34 H 0.09 1.73 7.48 -51.93 -0.39 1.34 16 35 H 0.09 0.89 4.33 -51.93 -0.22 0.66 16 36 H 0.10 0.94 8.12 -51.93 -0.42 0.52 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.50 8.05 -51.93 -0.42 0.08 16 39 H 0.38 1.83 9.12 45.56 0.42 2.25 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 45 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 47 H 0.13 1.68 4.62 -52.49 -0.24 1.43 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -38.15 377.86 -9.20 -47.35 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.01 Total: 9.81 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -2.75 Total: -0.56 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.03 Total: -57.20 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -1.14 Total: -23.03 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.15 -9.20 -47.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279783767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.532 kcal (2) G-P(sol) polarization free energy of solvation -38.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.86 seconds