Wall clock time and date at job start Tue Mar 31 2020 21:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99545 * 2 1 4 4 H 1.48507 * 109.47266 * 269.99957 * 3 2 1 5 5 H 1.48499 * 109.47563 * 30.00098 * 3 2 1 6 6 H 1.48502 * 109.47299 * 149.99926 * 3 2 1 7 7 C 1.38807 * 120.00235 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00205 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00373 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00446 * 179.72651 * 9 7 2 11 11 C 1.52995 * 109.47506 * 180.27562 * 10 9 7 12 12 N 1.46493 * 109.47555 * 179.97438 * 11 10 9 13 13 C 1.46507 * 120.00071 * 89.99897 * 12 11 10 14 14 C 1.52999 * 109.47288 * 83.67576 * 13 12 11 15 15 O 1.42898 * 109.46897 * 65.00175 * 14 13 12 16 16 C 1.34779 * 120.00403 * 270.00028 * 12 11 10 17 17 O 1.21278 * 119.99719 * 3.73570 * 16 12 11 18 18 C 1.50699 * 120.00041 * 183.73752 * 16 12 11 19 19 H 1.08995 * 109.33913 * 29.60033 * 18 16 12 20 20 O 1.42723 * 109.33650 * 149.11478 * 18 16 12 21 21 C 1.43212 * 113.14308 * 172.00038 * 20 18 16 22 22 C 1.52968 * 108.47907 * 289.33828 * 21 20 18 23 23 C 1.50744 * 109.76301 * 49.22543 * 22 21 20 24 24 C 1.38591 * 118.76241 * 163.20990 * 23 22 21 25 25 C 1.38071 * 120.27252 * 179.52681 * 24 23 22 26 26 C 1.38258 * 119.86376 * 0.02562 * 25 24 23 27 27 C 1.38055 * 119.89593 * 0.08615 * 26 25 24 28 28 C 1.37906 * 121.34919 * 342.91767 * 23 22 21 29 29 H 0.97000 * 120.00533 * 359.97438 * 1 2 3 30 30 H 0.97003 * 119.99560 * 359.97438 * 9 7 2 31 31 H 1.09003 * 109.46939 * 300.27387 * 10 9 7 32 32 H 1.08997 * 109.47407 * 60.27123 * 10 9 7 33 33 H 1.09003 * 109.46878 * 299.99862 * 11 10 9 34 34 H 1.09005 * 109.47063 * 59.99679 * 11 10 9 35 35 H 1.08999 * 109.47319 * 203.68412 * 13 12 11 36 36 H 1.08999 * 109.46866 * 323.67510 * 13 12 11 37 37 H 1.08997 * 109.46938 * 185.00008 * 14 13 12 38 38 H 1.08997 * 109.46808 * 305.00469 * 14 13 12 39 39 H 0.96703 * 114.00475 * 179.97438 * 15 14 13 40 40 H 1.09006 * 109.63361 * 169.64236 * 21 20 18 41 41 H 1.08992 * 109.80031 * 49.13628 * 21 20 18 42 42 H 1.08997 * 109.42261 * 289.13383 * 22 21 20 43 43 H 1.08998 * 109.41813 * 169.31637 * 22 21 20 44 44 H 1.08003 * 119.86602 * 359.52379 * 24 23 22 45 45 H 1.08003 * 120.06706 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.05389 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.84934 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 -0.0050 11 6 1.0641 -4.8197 -0.0107 12 7 1.7966 -6.0883 -0.0168 13 6 2.1628 -6.7288 1.2489 14 6 0.9798 -7.5499 1.7660 15 8 0.7141 -8.6240 0.8618 16 6 2.1337 -6.6663 -1.1868 17 8 1.8908 -6.1035 -2.2332 18 6 2.8123 -8.0118 -1.1945 19 1 2.4958 -8.5808 -0.3204 20 8 2.4415 -8.7213 -2.3761 21 6 3.1796 -9.9349 -2.5589 22 6 4.6210 -9.5755 -2.9237 23 6 5.1525 -8.5522 -1.9527 24 6 6.5216 -8.3505 -1.8794 25 6 7.0416 -7.4142 -1.0080 26 6 6.1929 -6.6751 -0.2048 27 6 4.8290 -6.8771 -0.2756 28 6 4.3057 -7.8176 -1.1494 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.6852 -3.7104 -0.8950 32 1 2.6845 -3.7185 0.8849 33 1 0.4371 -4.7660 0.8793 34 1 0.4377 -4.7579 -0.9007 35 1 3.0186 -7.3848 1.0899 36 1 2.4222 -5.9644 1.9813 37 1 1.2202 -7.9539 2.7494 38 1 0.0995 -6.9116 1.8406 39 1 -0.0252 -9.1880 1.1273 40 1 2.7324 -10.5178 -3.3642 41 1 3.1690 -10.5159 -1.6368 42 1 4.6479 -9.1655 -3.9332 43 1 5.2399 -10.4717 -2.8807 44 1 7.1847 -8.9281 -2.5064 45 1 8.1092 -7.2600 -0.9532 46 1 6.5962 -5.9416 0.4776 47 1 4.1667 -6.2997 0.3524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279783767.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:49 Heat of formation + Delta-G solvation = -101.862994 kcal Electronic energy + Delta-G solvation = -30000.374419 eV Core-core repulsion = 25954.929485 eV Total energy + Delta-G solvation = -4045.444934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 28.94 seconds Orbital eigenvalues (eV) -42.10831 -40.33909 -38.64944 -38.09572 -37.12921 -35.97399 -34.22389 -33.49666 -32.76528 -30.70023 -30.57959 -29.27754 -27.25954 -25.58011 -24.88168 -24.09193 -23.76411 -22.90348 -21.18378 -20.26459 -19.27812 -18.87492 -18.53733 -18.10465 -17.60370 -16.96103 -16.62224 -16.48830 -16.33709 -16.03648 -15.66207 -15.38770 -15.29804 -15.02875 -14.85519 -14.81745 -14.71036 -14.53803 -14.02799 -13.69228 -13.54728 -13.35457 -13.10250 -12.99403 -12.90381 -12.83745 -12.75416 -12.43028 -12.39114 -12.14308 -11.98555 -11.88705 -11.59740 -11.02623 -10.97594 -10.91409 -10.66781 -9.85247 -9.76027 -9.59713 -9.08633 -7.99071 -5.30113 0.23272 0.35391 1.37749 1.44684 1.48170 1.55980 1.68393 2.53753 2.69205 2.91570 3.32198 3.34476 3.41000 3.48570 3.72309 3.84514 3.91269 4.00474 4.04687 4.06965 4.16676 4.20052 4.26783 4.30876 4.37321 4.48383 4.52107 4.53742 4.58083 4.63877 4.67571 4.80285 4.81195 4.92000 4.98188 4.98424 5.04717 5.11738 5.38296 5.41470 5.46826 5.52041 5.52232 5.97087 6.00813 6.22131 6.26328 6.94280 7.04662 7.28437 7.99085 8.25301 9.24300 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012751 B = 0.003355 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.354069 B = 8344.647315 C = 9392.985290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.071 4.071 3 Si 0.977 3.023 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.251 4.251 8 H 0.072 0.928 9 N -0.741 5.741 10 C 0.151 3.849 11 C 0.124 3.876 12 N -0.593 5.593 13 C 0.082 3.918 14 C 0.059 3.941 15 O -0.590 6.590 16 C 0.527 3.473 17 O -0.574 6.574 18 C 0.127 3.873 19 H 0.127 0.873 20 O -0.384 6.384 21 C 0.052 3.948 22 C -0.115 4.115 23 C -0.082 4.082 24 C -0.120 4.120 25 C -0.114 4.114 26 C -0.128 4.128 27 C -0.135 4.135 28 C -0.136 4.136 29 H 0.254 0.746 30 H 0.376 0.624 31 H -0.007 1.007 32 H 0.037 0.963 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.398 0.602 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.121 0.879 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.141 0.859 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.206 -27.846 4.914 30.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.383 4.383 8 H 0.090 0.910 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.001 3.999 12 N -0.326 5.326 13 C -0.040 4.040 14 C -0.019 4.019 15 O -0.399 6.399 16 C 0.315 3.685 17 O -0.452 6.452 18 C 0.067 3.933 19 H 0.144 0.856 20 O -0.303 6.303 21 C -0.024 4.024 22 C -0.151 4.151 23 C -0.082 4.082 24 C -0.137 4.137 25 C -0.132 4.132 26 C -0.146 4.146 27 C -0.153 4.153 28 C -0.136 4.136 29 H 0.063 0.937 30 H 0.208 0.792 31 H 0.011 0.989 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.136 0.864 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.248 0.752 40 H 0.141 0.859 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.139 0.861 44 H 0.171 0.829 45 H 0.170 0.830 46 H 0.158 0.842 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.579 -27.139 3.941 29.768 hybrid contribution -0.632 1.161 0.176 1.334 sum 10.947 -25.978 4.116 28.489 Atomic orbital electron populations 1.69815 1.06621 1.26346 1.58956 1.25610 0.96490 1.01176 1.03102 0.85098 0.77857 0.79128 0.77402 1.21705 1.21508 1.19109 1.19579 0.91394 0.85188 1.42125 0.90958 1.42373 1.05663 1.00876 1.89571 1.20927 0.94259 0.85286 0.97236 1.21373 0.93848 0.81606 1.03068 1.47752 1.56560 1.22061 1.06276 1.22411 0.98665 0.97797 0.85094 1.22665 0.97278 0.88779 0.93197 1.86393 1.57256 1.43994 1.52254 1.20623 0.77759 0.86872 0.83272 1.90694 1.55321 1.65648 1.33546 1.20777 0.90179 0.90983 0.91388 0.85575 1.88108 1.62030 1.37440 1.42739 1.22992 0.91023 0.85162 1.03234 1.21229 0.97415 0.98617 0.97885 1.19829 0.93997 0.97895 0.96486 1.21418 0.93858 0.99120 0.99345 1.21543 1.01192 0.95189 0.95239 1.21399 0.92805 1.00049 1.00326 1.21464 0.97042 0.97594 0.99188 1.19978 0.94284 0.99652 0.99722 0.93750 0.79214 0.98866 0.94536 0.87748 0.92704 0.88165 0.86403 0.88882 0.93117 0.75170 0.85947 0.90732 0.90129 0.86088 0.82908 0.83014 0.84160 0.85660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 3 Si 0.98 47.36 29.55 68.60 2.03 49.39 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.25 -14.78 9.99 84.03 0.84 -13.94 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -40.25 5.60 -343.48 -1.92 -42.18 16 10 C 0.15 6.68 6.58 86.38 0.57 7.25 16 11 C 0.12 4.55 5.51 86.38 0.48 5.03 16 12 N -0.59 -18.25 2.09 -821.82 -1.72 -19.97 16 13 C 0.08 1.63 4.21 86.38 0.36 1.99 16 14 C 0.06 0.88 7.38 71.98 0.53 1.41 16 15 O -0.59 -9.78 11.27 -148.98 -1.68 -11.46 16 16 C 0.53 19.43 5.91 87.66 0.52 19.95 16 17 O -0.57 -27.81 16.36 14.02 0.23 -27.58 16 18 C 0.13 3.73 2.32 29.09 0.07 3.79 16 19 H 0.13 3.13 4.55 -2.39 -0.01 3.12 16 20 O -0.38 -11.82 10.14 -131.94 -1.34 -13.16 16 21 C 0.05 0.97 6.84 71.97 0.49 1.46 16 22 C -0.11 -1.97 6.00 29.85 0.18 -1.79 16 23 C -0.08 -1.85 5.78 -19.84 -0.11 -1.96 16 24 C -0.12 -2.18 9.67 22.31 0.22 -1.97 16 25 C -0.11 -2.07 10.05 22.23 0.22 -1.85 16 26 C -0.13 -2.77 10.05 22.23 0.22 -2.55 16 27 C -0.13 -3.48 8.11 22.32 0.18 -3.30 16 28 C -0.14 -3.66 5.39 -19.86 -0.11 -3.76 16 29 H 0.25 15.30 8.31 -92.71 -0.77 14.52 16 30 H 0.38 21.30 7.67 -92.71 -0.71 20.58 16 31 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 3.25 7.98 -2.39 -0.02 3.23 16 34 H 0.05 2.36 7.48 -2.38 -0.02 2.34 16 35 H 0.10 1.85 4.33 -2.39 -0.01 1.84 16 36 H 0.12 1.96 8.12 -2.39 -0.02 1.94 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 0.81 8.05 -2.39 -0.02 0.79 16 39 H 0.40 3.14 9.12 -74.06 -0.68 2.46 16 40 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 41 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 45 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 46 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 47 H 0.13 3.22 4.62 -2.91 -0.01 3.21 16 Total: -1.00 -86.20 377.86 0.63 -85.57 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: -0.38 Total: 33.73 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 5.13 Total: 6.01 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -3.36 Total: -122.51 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -2.79 Total: -52.19 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -86.20 0.63 -85.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279783767.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.293 kcal (2) G-P(sol) polarization free energy of solvation -86.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 28.94 seconds