Wall clock time and date at job start Tue Mar 31 2020 22:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47456 * 269.99613 * 3 2 1 5 5 H 1.48500 * 109.47237 * 29.99774 * 3 2 1 6 6 H 1.48508 * 109.46963 * 149.99542 * 3 2 1 7 7 C 1.38808 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00319 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99604 * 180.02562 * 7 2 1 10 10 C 1.46507 * 120.00021 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47039 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46499 * 120.00117 * 270.00219 * 12 11 10 14 14 C 1.53004 * 109.47248 * 274.77933 * 13 12 11 15 15 O 1.42903 * 109.46795 * 64.99646 * 14 13 12 16 16 C 1.34773 * 119.99981 * 89.99909 * 12 11 10 17 17 O 1.21278 * 120.00062 * 5.47182 * 16 12 11 18 18 C 1.50697 * 120.00233 * 185.46826 * 16 12 11 19 19 H 1.09002 * 109.20882 * 326.08170 * 18 16 12 20 20 O 1.42723 * 109.34272 * 206.47981 * 18 16 12 21 21 C 1.43216 * 113.13354 * 187.97121 * 20 18 16 22 22 C 1.52977 * 108.47896 * 70.67301 * 21 20 18 23 23 C 1.50747 * 109.76375 * 310.79095 * 22 21 20 24 24 C 1.38596 * 118.76570 * 197.00754 * 23 22 21 25 25 C 1.38066 * 120.27490 * 180.18542 * 24 23 22 26 26 C 1.38259 * 119.86266 * 0.02977 * 25 24 23 27 27 C 1.38050 * 119.89941 * 359.90804 * 26 25 24 28 28 C 1.37904 * 121.34993 * 17.05436 * 23 22 21 29 29 H 0.96999 * 119.99396 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00461 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46846 * 59.99835 * 10 9 7 32 32 H 1.08995 * 109.47107 * 299.99858 * 10 9 7 33 33 H 1.09001 * 109.47180 * 60.00353 * 11 10 9 34 34 H 1.08998 * 109.47805 * 300.00133 * 11 10 9 35 35 H 1.09008 * 109.46833 * 34.77676 * 13 12 11 36 36 H 1.08995 * 109.47369 * 154.77570 * 13 12 11 37 37 H 1.08991 * 109.47169 * 184.99679 * 14 13 12 38 38 H 1.09000 * 109.46909 * 305.00322 * 14 13 12 39 39 H 0.96701 * 113.99342 * 179.97438 * 15 14 13 40 40 H 1.09003 * 109.63419 * 190.36344 * 21 20 18 41 41 H 1.08995 * 109.63361 * 310.97521 * 21 20 18 42 42 H 1.09001 * 109.41891 * 70.87962 * 22 21 20 43 43 H 1.08996 * 109.42162 * 190.75938 * 22 21 20 44 44 H 1.07999 * 119.85922 * 0.20958 * 24 23 22 45 45 H 1.07994 * 120.06739 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.05125 * 179.97438 * 26 25 24 47 47 H 1.07998 * 119.85190 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 6 5.6163 -2.1914 0.0020 12 7 6.3488 -3.4602 0.0025 13 6 6.7151 -4.0940 1.2714 14 6 8.0356 -3.5058 1.7729 15 8 7.8543 -2.1219 2.0799 16 6 6.6856 -4.0443 -1.1645 17 8 6.4712 -3.4732 -2.2126 18 6 7.3288 -5.4071 -1.1669 19 1 7.9648 -5.5051 -0.2871 20 8 8.1238 -5.5525 -2.3433 21 6 8.6280 -6.8812 -2.5210 22 6 7.4604 -7.7972 -2.8923 23 6 6.3201 -7.5853 -1.9292 24 6 5.3207 -8.5428 -1.8579 25 6 4.2599 -8.3785 -0.9895 26 6 4.1941 -7.2536 -0.1883 27 6 5.1898 -6.3000 -0.2578 28 6 6.2567 -6.4649 -1.1277 29 1 -0.4849 0.8401 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 3.8491 -3.0431 -0.8875 32 1 3.8485 -3.0419 0.8924 33 1 5.8796 -1.6191 0.8915 34 1 5.8797 -1.6206 -0.8885 35 1 5.9328 -3.9110 2.0081 36 1 6.8293 -5.1676 1.1217 37 1 8.3533 -4.0382 2.6693 38 1 8.7966 -3.6097 0.9995 39 1 8.6526 -1.6834 2.4048 40 1 9.3678 -6.8882 -3.3215 41 1 9.0842 -7.2269 -1.5935 42 1 7.1273 -7.5677 -3.9045 43 1 7.7856 -8.8364 -2.8445 44 1 5.3721 -9.4214 -2.4839 45 1 3.4832 -9.1269 -0.9364 46 1 3.3655 -7.1218 0.4917 47 1 5.1374 -5.4215 0.3681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279783768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:04 Heat of formation + Delta-G solvation = -69.464111 kcal Electronic energy + Delta-G solvation = -29997.915738 eV Core-core repulsion = 25953.875725 eV Total energy + Delta-G solvation = -4044.040013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 15.94 seconds Orbital eigenvalues (eV) -41.18912 -39.33590 -37.85943 -37.19975 -35.66286 -34.56163 -33.31981 -32.20981 -31.42444 -29.82874 -29.73346 -28.04374 -26.24730 -24.17560 -23.70604 -23.22907 -22.47921 -21.25607 -20.44119 -19.19900 -18.18897 -17.53991 -17.48859 -17.05207 -16.91148 -15.96343 -15.85659 -15.31074 -15.22029 -14.70456 -14.55911 -14.23599 -14.13085 -13.84965 -13.76221 -13.66000 -13.56725 -13.11573 -12.91770 -12.73735 -12.59481 -12.49024 -12.09465 -12.01039 -11.82343 -11.48048 -11.30049 -11.04528 -11.00940 -10.91990 -10.65039 -10.28241 -10.10212 -9.96793 -9.81952 -9.53934 -8.96438 -8.82898 -8.79043 -8.58113 -7.17448 -5.70524 -3.06059 1.04324 1.16843 2.50449 2.71807 3.44601 3.48479 3.51028 3.51977 3.66561 3.96365 4.24068 4.27768 4.42094 4.52708 4.66246 4.71389 4.77472 4.82357 4.87732 4.92152 4.95754 5.03471 5.12499 5.17068 5.24843 5.38991 5.44716 5.46261 5.55126 5.57635 5.67395 5.74030 5.75549 5.84419 5.84872 6.13979 6.21029 6.27941 6.34344 6.43537 6.65344 6.75198 6.76765 6.88029 7.33919 7.46360 8.04688 8.19905 8.48050 9.26965 9.99418 10.19247 11.47903 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003626 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.663989 B = 7720.255003 C = 8774.869986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.004 3.996 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.146 3.854 11 C 0.107 3.893 12 N -0.598 5.598 13 C 0.094 3.906 14 C 0.058 3.942 15 O -0.561 6.561 16 C 0.523 3.477 17 O -0.503 6.503 18 C 0.117 3.883 19 H 0.088 0.912 20 O -0.348 6.348 21 C 0.058 3.942 22 C -0.117 4.117 23 C -0.066 4.066 24 C -0.120 4.120 25 C -0.110 4.110 26 C -0.114 4.114 27 C -0.112 4.112 28 C -0.115 4.115 29 H 0.259 0.741 30 H 0.362 0.638 31 H 0.028 0.972 32 H 0.025 0.975 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.046 0.954 39 H 0.378 0.622 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.129 0.871 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.046 -20.050 2.760 29.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.371 4.371 8 H 0.107 0.893 9 N -0.398 5.398 10 C 0.018 3.982 11 C -0.015 4.015 12 N -0.333 5.333 13 C -0.029 4.029 14 C -0.021 4.021 15 O -0.367 6.367 16 C 0.309 3.691 17 O -0.376 6.376 18 C 0.056 3.944 19 H 0.105 0.895 20 O -0.265 6.265 21 C -0.018 4.018 22 C -0.154 4.154 23 C -0.066 4.066 24 C -0.138 4.138 25 C -0.128 4.128 26 C -0.132 4.132 27 C -0.130 4.130 28 C -0.116 4.116 29 H 0.069 0.931 30 H 0.194 0.806 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.225 0.775 40 H 0.123 0.877 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.142 0.858 45 H 0.143 0.857 46 H 0.147 0.853 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 21.121 -19.791 1.837 29.003 hybrid contribution 0.925 0.964 0.428 1.402 sum 22.046 -18.827 2.265 29.079 Atomic orbital electron populations 1.69710 1.05092 1.25781 1.57767 1.24654 0.95252 0.97211 1.02022 0.86530 0.79232 0.84841 0.77892 1.20997 1.21735 1.20194 1.19026 0.80409 0.94757 1.42878 0.89299 1.42541 1.04060 1.01982 1.91224 1.20900 0.88940 0.89734 0.98623 1.21800 0.91837 0.83739 1.04086 1.47718 1.56737 1.24249 1.04563 1.21959 0.97312 0.96968 0.86690 1.22680 0.97345 0.83383 0.98691 1.86580 1.39324 1.22534 1.88229 1.19899 0.79151 0.85978 0.84104 1.90748 1.52213 1.63753 1.30870 1.20753 0.91426 0.92119 0.90112 0.89516 1.88194 1.66853 1.29015 1.42464 1.22719 0.95219 0.82236 1.01662 1.21160 0.94171 1.00759 0.99285 1.19416 0.96842 0.93889 0.96474 1.21034 0.94290 0.99014 0.99428 1.21191 0.97858 0.97848 0.95897 1.21171 0.98525 0.93932 0.99556 1.21395 0.93513 0.99633 0.98454 1.19710 0.97301 0.95585 0.99012 0.93101 0.80586 0.95397 0.95754 0.88919 0.89937 0.88468 0.88664 0.92524 0.93527 0.77516 0.87658 0.92447 0.89266 0.89480 0.85804 0.85683 0.85307 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.30 13.97 55.49 0.78 -29.52 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 23.02 27.74 -169.99 -4.71 18.31 16 4 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 6 H -0.28 -6.73 6.52 56.52 0.37 -6.36 16 7 C -0.24 -7.18 10.47 -15.06 -0.16 -7.34 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 N -0.75 -19.20 5.41 -59.91 -0.32 -19.52 16 10 C 0.15 3.11 6.58 -4.04 -0.03 3.08 16 11 C 0.11 1.89 5.38 -4.04 -0.02 1.87 16 12 N -0.60 -8.61 1.89 -173.69 -0.33 -8.94 16 13 C 0.09 0.95 3.98 -4.04 -0.02 0.93 16 14 C 0.06 0.48 7.38 37.16 0.27 0.75 16 15 O -0.56 -5.67 12.05 -35.23 -0.42 -6.10 16 16 C 0.52 8.50 6.19 -10.99 -0.07 8.43 16 17 O -0.50 -10.64 16.24 -12.91 -0.21 -10.85 16 18 C 0.12 1.48 2.44 -29.05 -0.07 1.41 16 19 H 0.09 0.81 6.48 -51.93 -0.34 0.48 16 20 O -0.35 -4.63 10.10 -53.70 -0.54 -5.18 16 21 C 0.06 0.50 6.85 37.15 0.25 0.75 16 22 C -0.12 -0.98 6.01 -27.87 -0.17 -1.15 16 23 C -0.07 -0.73 5.78 -104.59 -0.60 -1.33 16 24 C -0.12 -1.18 9.67 -39.51 -0.38 -1.56 16 25 C -0.11 -1.11 10.05 -39.64 -0.40 -1.50 16 26 C -0.11 -1.29 10.05 -39.64 -0.40 -1.69 16 27 C -0.11 -1.39 8.22 -39.50 -0.32 -1.71 16 28 C -0.12 -1.43 5.39 -104.61 -0.56 -1.99 16 29 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 30 H 0.36 8.97 5.53 -40.82 -0.23 8.75 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 1.57 6.69 -51.93 -0.35 1.22 16 34 H 0.08 1.62 7.35 -51.93 -0.38 1.23 16 35 H 0.10 1.00 8.11 -51.92 -0.42 0.58 16 36 H 0.10 0.76 4.58 -51.93 -0.24 0.52 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.38 2.16 9.12 45.56 0.42 2.57 16 40 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 46 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.13 1.64 4.62 -52.49 -0.24 1.40 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -39.29 376.14 -8.88 -48.17 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.02 Total: 8.97 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -2.77 Total: -1.02 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.12 Total: -57.98 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -1.18 Total: -22.13 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.71 Total: 18.31 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -39.29 -8.88 -48.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279783768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.291 kcal (2) G-P(sol) polarization free energy of solvation -39.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.94 seconds