Wall clock time and date at job start Tue Mar 31 2020 21:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86796 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47456 * 269.99613 * 3 2 1 5 5 H 1.48500 * 109.47237 * 29.99774 * 3 2 1 6 6 H 1.48508 * 109.46963 * 149.99542 * 3 2 1 7 7 C 1.38808 * 119.99567 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00319 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99604 * 180.02562 * 7 2 1 10 10 C 1.46507 * 120.00021 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47039 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47039 * 180.02562 * 11 10 9 13 13 C 1.46499 * 120.00117 * 270.00219 * 12 11 10 14 14 C 1.53004 * 109.47248 * 274.77933 * 13 12 11 15 15 O 1.42903 * 109.46795 * 64.99646 * 14 13 12 16 16 C 1.34773 * 119.99981 * 89.99909 * 12 11 10 17 17 O 1.21278 * 120.00062 * 5.47182 * 16 12 11 18 18 C 1.50697 * 120.00233 * 185.46826 * 16 12 11 19 19 H 1.09002 * 109.20882 * 326.08170 * 18 16 12 20 20 O 1.42723 * 109.34272 * 206.47981 * 18 16 12 21 21 C 1.43216 * 113.13354 * 187.97121 * 20 18 16 22 22 C 1.52977 * 108.47896 * 70.67301 * 21 20 18 23 23 C 1.50747 * 109.76375 * 310.79095 * 22 21 20 24 24 C 1.38596 * 118.76570 * 197.00754 * 23 22 21 25 25 C 1.38066 * 120.27490 * 180.18542 * 24 23 22 26 26 C 1.38259 * 119.86266 * 0.02977 * 25 24 23 27 27 C 1.38050 * 119.89941 * 359.90804 * 26 25 24 28 28 C 1.37904 * 121.34993 * 17.05436 * 23 22 21 29 29 H 0.96999 * 119.99396 * 0.02562 * 1 2 3 30 30 H 0.97005 * 120.00461 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46846 * 59.99835 * 10 9 7 32 32 H 1.08995 * 109.47107 * 299.99858 * 10 9 7 33 33 H 1.09001 * 109.47180 * 60.00353 * 11 10 9 34 34 H 1.08998 * 109.47805 * 300.00133 * 11 10 9 35 35 H 1.09008 * 109.46833 * 34.77676 * 13 12 11 36 36 H 1.08995 * 109.47369 * 154.77570 * 13 12 11 37 37 H 1.08991 * 109.47169 * 184.99679 * 14 13 12 38 38 H 1.09000 * 109.46909 * 305.00322 * 14 13 12 39 39 H 0.96701 * 113.99342 * 179.97438 * 15 14 13 40 40 H 1.09003 * 109.63419 * 190.36344 * 21 20 18 41 41 H 1.08995 * 109.63361 * 310.97521 * 21 20 18 42 42 H 1.09001 * 109.41891 * 70.87962 * 22 21 20 43 43 H 1.08996 * 109.42162 * 190.75938 * 22 21 20 44 44 H 1.07999 * 119.85922 * 0.20958 * 24 23 22 45 45 H 1.07994 * 120.06739 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.05125 * 179.97438 * 26 25 24 47 47 H 1.07998 * 119.85190 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0022 11 6 5.6163 -2.1914 0.0020 12 7 6.3488 -3.4602 0.0025 13 6 6.7151 -4.0940 1.2714 14 6 8.0356 -3.5058 1.7729 15 8 7.8543 -2.1219 2.0799 16 6 6.6856 -4.0443 -1.1645 17 8 6.4712 -3.4732 -2.2126 18 6 7.3288 -5.4071 -1.1669 19 1 7.9648 -5.5051 -0.2871 20 8 8.1238 -5.5525 -2.3433 21 6 8.6280 -6.8812 -2.5210 22 6 7.4604 -7.7972 -2.8923 23 6 6.3201 -7.5853 -1.9292 24 6 5.3207 -8.5428 -1.8579 25 6 4.2599 -8.3785 -0.9895 26 6 4.1941 -7.2536 -0.1883 27 6 5.1898 -6.3000 -0.2578 28 6 6.2567 -6.4649 -1.1277 29 1 -0.4849 0.8401 -0.0004 30 1 3.8647 -0.3621 0.0007 31 1 3.8491 -3.0431 -0.8875 32 1 3.8485 -3.0419 0.8924 33 1 5.8796 -1.6191 0.8915 34 1 5.8797 -1.6206 -0.8885 35 1 5.9328 -3.9110 2.0081 36 1 6.8293 -5.1676 1.1217 37 1 8.3533 -4.0382 2.6693 38 1 8.7966 -3.6097 0.9995 39 1 8.6526 -1.6834 2.4048 40 1 9.3678 -6.8882 -3.3215 41 1 9.0842 -7.2269 -1.5935 42 1 7.1273 -7.5677 -3.9045 43 1 7.7856 -8.8364 -2.8445 44 1 5.3721 -9.4214 -2.4839 45 1 3.4832 -9.1269 -0.9364 46 1 3.3655 -7.1218 0.4917 47 1 5.1374 -5.4215 0.3681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279783768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:40 Heat of formation + Delta-G solvation = -98.801666 kcal Electronic energy + Delta-G solvation = -29999.187910 eV Core-core repulsion = 25953.875725 eV Total energy + Delta-G solvation = -4045.312185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 31.06 seconds Orbital eigenvalues (eV) -42.16382 -40.37681 -38.71891 -38.09825 -37.21342 -36.07138 -34.25874 -33.68498 -32.88702 -31.07011 -30.55985 -29.34069 -27.40168 -25.34146 -24.89737 -24.09835 -23.74436 -22.91499 -21.22002 -20.43575 -19.63729 -19.02751 -18.31840 -18.03143 -17.91023 -17.01254 -16.66036 -16.48375 -16.34824 -16.13689 -15.67939 -15.54849 -15.42886 -15.01785 -14.94163 -14.78549 -14.68407 -14.56494 -14.05797 -13.78287 -13.59199 -13.42325 -13.36842 -13.06304 -12.94677 -12.86504 -12.73759 -12.59383 -12.25633 -12.13090 -12.07034 -11.85214 -11.61877 -11.10584 -11.05187 -10.87477 -10.76301 -9.85344 -9.79203 -9.62347 -9.39798 -8.07439 -5.43181 0.19916 0.34597 1.34072 1.35717 1.40404 1.47003 1.59540 2.45367 2.66712 2.82244 3.23401 3.28679 3.34233 3.39578 3.68395 3.69576 3.82030 3.92546 3.97076 4.08279 4.10146 4.19236 4.21273 4.27116 4.28819 4.40508 4.50444 4.52836 4.54196 4.62052 4.65908 4.78979 4.79710 4.91146 4.97322 4.97992 4.99651 5.11197 5.37376 5.39902 5.49836 5.52729 5.67890 5.91777 5.98079 6.15417 6.23589 6.95572 6.97200 7.01202 7.73715 7.95195 9.13827 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003626 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.663989 B = 7720.255003 C = 8774.869986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.059 4.059 3 Si 0.956 3.044 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.248 1.248 7 C -0.242 4.242 8 H 0.053 0.947 9 N -0.754 5.754 10 C 0.153 3.847 11 C 0.125 3.875 12 N -0.591 5.591 13 C 0.085 3.915 14 C 0.060 3.940 15 O -0.590 6.590 16 C 0.517 3.483 17 O -0.566 6.566 18 C 0.127 3.873 19 H 0.122 0.878 20 O -0.381 6.381 21 C 0.051 3.949 22 C -0.115 4.115 23 C -0.077 4.077 24 C -0.120 4.120 25 C -0.112 4.112 26 C -0.132 4.132 27 C -0.130 4.130 28 C -0.134 4.134 29 H 0.260 0.740 30 H 0.368 0.632 31 H 0.000 1.000 32 H 0.035 0.965 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.396 0.604 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.121 0.879 44 H 0.153 0.847 45 H 0.148 0.852 46 H 0.133 0.867 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.918 -21.447 3.723 33.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.783 3.217 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.372 4.372 8 H 0.072 0.928 9 N -0.400 5.400 10 C 0.025 3.975 11 C 0.001 3.999 12 N -0.324 5.324 13 C -0.037 4.037 14 C -0.018 4.018 15 O -0.399 6.399 16 C 0.304 3.696 17 O -0.444 6.444 18 C 0.066 3.934 19 H 0.139 0.861 20 O -0.300 6.300 21 C -0.025 4.025 22 C -0.152 4.152 23 C -0.077 4.077 24 C -0.138 4.138 25 C -0.130 4.130 26 C -0.150 4.150 27 C -0.148 4.148 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.201 0.799 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.136 0.864 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.246 0.754 40 H 0.143 0.857 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.139 0.861 44 H 0.171 0.829 45 H 0.166 0.834 46 H 0.151 0.849 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 24.060 -21.235 2.855 32.217 hybrid contribution -0.026 1.244 0.115 1.249 sum 24.034 -19.991 2.970 31.402 Atomic orbital electron populations 1.69886 1.07090 1.26936 1.59143 1.25520 0.96205 1.01339 1.01983 0.85393 0.78916 0.79304 0.78134 1.20769 1.21341 1.17226 1.18972 0.82295 0.93628 1.42341 0.92847 1.42504 1.02723 1.03728 1.91067 1.20930 0.91180 0.87860 0.97534 1.21400 0.89471 0.85419 1.03591 1.47746 1.55495 1.23075 1.06068 1.22335 0.98639 0.98253 0.84428 1.22717 0.95781 0.82996 1.00307 1.86508 1.41161 1.23624 1.88558 1.20719 0.78310 0.87090 0.83433 1.90705 1.55018 1.65574 1.33075 1.20698 0.91898 0.89413 0.91394 0.86096 1.88155 1.67023 1.31906 1.42886 1.23066 0.95550 0.80205 1.03653 1.21241 0.93317 1.02753 0.97896 1.19821 0.97996 0.93563 0.96318 1.21409 0.93541 0.99620 0.99234 1.21526 0.98532 0.97728 0.95235 1.21377 0.98628 0.94568 1.00404 1.21444 0.94319 0.99846 0.99163 1.19818 0.97508 0.96251 0.99914 0.93074 0.79899 0.98208 0.94697 0.87510 0.92109 0.88607 0.86376 0.88934 0.93067 0.75405 0.85723 0.90028 0.90190 0.86076 0.82940 0.83394 0.84889 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.06 13.97 21.65 0.30 -64.76 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.96 47.61 27.74 68.60 1.90 49.51 16 4 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.25 -11.11 6.52 99.48 0.65 -10.46 16 7 C -0.24 -14.82 10.47 84.03 0.88 -13.94 16 8 H 0.05 3.58 8.06 -2.91 -0.02 3.55 16 9 N -0.75 -38.95 5.41 -343.46 -1.86 -40.81 16 10 C 0.15 6.67 6.58 86.38 0.57 7.23 16 11 C 0.12 4.44 5.38 86.38 0.46 4.91 16 12 N -0.59 -16.95 1.89 -821.81 -1.55 -18.50 16 13 C 0.08 1.57 3.98 86.38 0.34 1.92 16 14 C 0.06 0.82 7.38 71.98 0.53 1.35 16 15 O -0.59 -10.58 12.05 -148.98 -1.80 -12.37 16 16 C 0.52 17.05 6.19 87.66 0.54 17.59 16 17 O -0.57 -25.11 16.24 14.64 0.24 -24.87 16 18 C 0.13 3.09 2.44 29.09 0.07 3.16 16 19 H 0.12 1.98 6.48 -2.39 -0.02 1.96 16 20 O -0.38 -9.80 10.10 -131.32 -1.33 -11.12 16 21 C 0.05 0.73 6.85 71.97 0.49 1.23 16 22 C -0.12 -1.65 6.01 29.86 0.18 -1.47 16 23 C -0.08 -1.55 5.78 -19.84 -0.11 -1.67 16 24 C -0.12 -2.09 9.67 22.31 0.22 -1.88 16 25 C -0.11 -2.09 10.05 22.23 0.22 -1.87 16 26 C -0.13 -2.96 10.05 22.23 0.22 -2.73 16 27 C -0.13 -3.20 8.22 22.32 0.18 -3.02 16 28 C -0.13 -3.22 5.39 -19.86 -0.11 -3.32 16 29 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 30 H 0.37 17.99 5.53 -92.70 -0.51 17.48 16 31 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 3.53 6.69 -2.39 -0.02 3.51 16 34 H 0.06 2.45 7.35 -2.39 -0.02 2.43 16 35 H 0.10 1.83 8.11 -2.38 -0.02 1.81 16 36 H 0.12 1.64 4.58 -2.39 -0.01 1.63 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.40 3.57 9.12 -74.06 -0.68 2.89 16 40 H 0.12 1.26 8.14 -2.39 -0.02 1.25 16 41 H 0.08 0.78 8.07 -2.39 -0.02 0.76 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 45 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 46 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 47 H 0.13 3.14 4.62 -2.91 -0.01 3.13 16 Total: -1.00 -89.37 376.14 0.84 -88.53 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: -0.24 Total: 30.07 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.17 Total: 4.32 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -3.11 Total: -124.07 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -2.88 Total: -48.36 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.90 Total: 49.51 kcal Total: -89.37 0.84 -88.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279783768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.271 kcal (2) G-P(sol) polarization free energy of solvation -89.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 31.06 seconds