Wall clock time and date at job start Tue Mar 31 2020 22:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99820 * 2 1 4 4 H 1.48502 * 109.47540 * 270.00265 * 3 2 1 5 5 H 1.48502 * 109.47253 * 30.00628 * 3 2 1 6 6 H 1.48504 * 109.47174 * 150.00414 * 3 2 1 7 7 C 1.38812 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99958 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00187 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00319 * 173.90460 * 9 7 2 11 11 C 1.53008 * 112.84467 * 294.91353 * 10 9 7 12 12 N 1.46499 * 109.46770 * 294.05941 * 11 10 9 13 13 C 1.34783 * 119.99579 * 185.04790 * 12 11 10 14 14 O 1.21274 * 119.99894 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99740 * 180.02562 * 13 12 11 16 16 C 1.52994 * 110.43434 * 59.30299 * 15 13 12 17 17 F 1.39898 * 109.47444 * 60.69802 * 16 15 13 18 18 F 1.39901 * 109.47560 * 180.70018 * 16 15 13 19 19 F 1.39908 * 109.47516 * 300.69916 * 16 15 13 20 20 C 1.54891 * 110.48792 * 296.76011 * 15 13 12 21 21 C 1.55237 * 102.58691 * 279.18925 * 20 15 13 22 22 C 1.54266 * 104.23041 * 322.08449 * 21 20 15 23 23 C 1.53866 * 106.59924 * 23.61160 * 22 21 20 24 24 C 1.53778 * 113.61432 * 66.10476 * 10 9 7 25 25 C 1.53957 * 87.01927 * 89.23373 * 24 10 9 26 26 C 1.53775 * 113.61759 * 163.71652 * 10 9 7 27 27 H 0.96999 * 120.00189 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99806 * 353.90400 * 9 7 2 29 29 H 1.08992 * 109.47226 * 54.06463 * 11 10 9 30 30 H 1.09004 * 109.46470 * 174.06720 * 11 10 9 31 31 H 0.96997 * 120.00212 * 5.06059 * 12 11 10 32 32 H 1.08996 * 110.75448 * 37.57983 * 20 15 13 33 33 H 1.08997 * 110.75567 * 160.94729 * 20 15 13 34 34 H 1.09002 * 110.46569 * 203.39438 * 21 20 15 35 35 H 1.09003 * 110.58171 * 80.83065 * 21 20 15 36 36 H 1.08997 * 110.02988 * 264.32201 * 22 21 20 37 37 H 1.08997 * 110.02826 * 142.90197 * 22 21 20 38 38 H 1.09002 * 110.03176 * 240.71090 * 23 22 21 39 39 H 1.09006 * 110.07253 * 119.30922 * 23 22 21 40 40 H 1.09001 * 113.61402 * 203.75454 * 24 10 9 41 41 H 1.09001 * 113.61842 * 334.65288 * 24 10 9 42 42 H 1.08998 * 113.53221 * 270.81188 * 25 24 10 43 43 H 1.08994 * 113.66943 * 139.93225 * 25 24 10 44 44 H 1.09003 * 113.61580 * 25.34457 * 26 10 9 45 45 H 1.09000 * 113.61720 * 156.25140 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1123 -2.4637 0.1331 11 6 3.8955 -3.1350 1.4908 12 7 4.4779 -2.3021 2.5459 13 6 4.4970 -2.7434 3.8193 14 8 4.0325 -3.8301 4.0915 15 6 5.0956 -1.8864 4.9048 16 6 4.3631 -0.5460 4.9920 17 9 3.0163 -0.7695 5.2975 18 9 4.9443 0.2389 5.9937 19 9 4.4587 0.1186 3.7646 20 6 6.6065 -1.6627 4.6477 21 6 7.2389 -2.9748 5.1846 22 6 6.4066 -3.3112 6.4392 23 6 5.0439 -2.6191 6.2613 24 6 3.9256 -3.4144 -1.0611 25 6 5.1400 -2.7182 -1.7021 26 6 5.5914 -2.3636 -0.2754 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3667 -0.0903 29 1 2.8272 -3.2548 1.6704 30 1 4.3763 -4.1133 1.4932 31 1 4.8496 -1.4330 2.3281 32 1 6.8036 -1.5437 3.5823 33 1 6.9702 -0.8010 5.2074 34 1 8.2833 -2.8131 5.4516 35 1 7.1540 -3.7715 4.4456 36 1 6.9050 -2.9308 7.3309 37 1 6.2703 -4.3897 6.5186 38 1 4.8809 -1.9029 7.0666 39 1 4.2455 -3.3612 6.2547 40 1 4.1016 -4.4620 -0.8168 41 1 2.9936 -3.2561 -1.6037 42 1 4.8755 -1.8496 -2.3050 43 1 5.8152 -3.4020 -2.2164 44 1 6.0024 -1.3580 -0.1848 45 1 6.2237 -3.1233 0.1840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280546711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:03 Heat of formation + Delta-G solvation = -163.222133 kcal Electronic energy + Delta-G solvation = -31885.001563 eV Core-core repulsion = 27295.039157 eV Total energy + Delta-G solvation = -4589.962406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.14540 -47.65685 -47.54657 -40.37267 -38.98065 -37.12525 -34.18397 -33.30600 -30.99844 -30.52875 -29.11535 -27.41064 -25.39095 -24.86196 -23.80832 -22.60850 -21.46561 -20.79213 -19.91551 -18.73725 -18.25903 -18.16109 -17.99144 -17.64307 -16.56811 -15.91988 -15.44016 -15.15380 -14.67998 -14.50705 -14.41716 -14.34248 -14.23059 -14.11412 -13.93400 -13.73979 -13.64876 -13.48638 -13.33879 -13.02539 -12.71074 -12.36516 -11.95602 -11.85863 -11.67986 -11.51924 -11.47232 -11.41477 -11.28472 -11.20822 -10.94012 -10.68331 -10.48752 -10.31430 -10.19350 -9.80122 -9.68962 -9.55794 -8.91992 -8.69200 -7.36180 -5.81027 -3.19111 2.26601 2.93708 3.14357 3.33833 3.35724 3.42955 3.64630 3.75435 4.01274 4.34152 4.45337 4.54713 4.66407 4.86899 4.95748 5.01465 5.04709 5.06625 5.14647 5.15498 5.28556 5.34154 5.38516 5.47725 5.64312 5.66108 5.67692 5.86294 5.89130 5.89793 5.98931 6.07426 6.11468 6.17240 6.18446 6.44752 6.59231 6.73857 6.79372 6.90958 7.70164 7.94893 8.31461 8.37642 9.13998 9.85933 10.03455 11.36684 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.005381 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.492166 B = 5201.826030 C = 6431.051226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.012 3.988 3 Si 0.877 3.123 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.724 5.724 10 C 0.178 3.822 11 C 0.119 3.881 12 N -0.699 5.699 13 C 0.526 3.474 14 O -0.525 6.525 15 C -0.136 4.136 16 C 0.464 3.536 17 F -0.171 7.171 18 F -0.178 7.178 19 F -0.172 7.172 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.107 4.107 24 C -0.146 4.146 25 C -0.130 4.130 26 C -0.147 4.147 27 H 0.260 0.740 28 H 0.363 0.637 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.402 0.598 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.392 -4.465 9.622 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.185 4.185 3 Si 0.707 3.293 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.372 4.372 8 H 0.110 0.890 9 N -0.366 5.366 10 C 0.085 3.915 11 C -0.007 4.007 12 N -0.349 5.349 13 C 0.308 3.692 14 O -0.401 6.401 15 C -0.141 4.141 16 C 0.410 3.590 17 F -0.152 7.152 18 F -0.160 7.160 19 F -0.153 7.153 20 C -0.150 4.150 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.145 4.145 24 C -0.187 4.187 25 C -0.167 4.167 26 C -0.185 4.185 27 H 0.070 0.930 28 H 0.197 0.803 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.238 0.762 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 16.749 -5.252 9.803 20.105 hybrid contribution 0.366 2.126 -0.127 2.161 sum 17.115 -3.126 9.676 19.908 Atomic orbital electron populations 1.69689 1.05104 1.25860 1.56840 1.24648 0.95131 0.97041 1.01638 0.86666 0.79536 0.85398 0.77671 1.21135 1.21751 1.20060 1.18908 0.80101 0.94689 1.43540 0.89007 1.42413 1.03985 1.01700 1.88526 1.20755 0.90963 0.88679 0.91064 1.21940 0.99360 0.92476 0.86880 1.45904 1.60024 1.22229 1.06743 1.19385 0.79686 0.86961 0.83125 1.90678 1.46057 1.21484 1.81901 1.23094 0.98728 0.91769 1.00498 1.20093 0.78166 0.86797 0.73988 1.93252 1.34473 1.94623 1.92864 1.93157 1.84189 1.76932 1.61711 1.93205 1.95955 1.82668 1.43517 1.22731 0.88893 1.00294 1.03084 1.22392 0.99399 0.96233 0.97684 1.22057 0.94148 1.01152 0.98042 1.22169 1.00546 1.00185 0.91589 1.23303 0.99314 0.97597 0.98438 1.22684 0.97737 1.00594 0.95704 1.23195 0.96347 1.01290 0.97631 0.92996 0.80332 0.90631 0.91932 0.76179 0.89702 0.89077 0.90528 0.90901 0.91192 0.90826 0.90298 0.88299 0.90988 0.90148 0.90132 0.92426 0.91900 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 2 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 3 Si 0.88 21.63 27.68 -169.99 -4.70 16.93 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.27 -6.31 6.61 56.52 0.37 -5.94 16 7 C -0.24 -6.47 9.55 -15.06 -0.14 -6.61 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 9 N -0.72 -15.68 4.98 -46.48 -0.23 -15.91 16 10 C 0.18 3.10 0.77 -131.01 -0.10 3.00 16 11 C 0.12 2.10 5.04 -4.04 -0.02 2.08 16 12 N -0.70 -11.54 4.93 -60.29 -0.30 -11.84 16 13 C 0.53 8.56 6.09 -10.98 -0.07 8.49 16 14 O -0.52 -9.88 15.42 5.56 0.09 -9.79 16 15 C -0.14 -1.79 0.32 -154.01 -0.05 -1.83 16 16 C 0.46 6.92 2.23 37.15 0.08 7.01 16 17 F -0.17 -2.97 16.88 2.25 0.04 -2.94 16 18 F -0.18 -2.35 15.78 2.25 0.04 -2.31 16 19 F -0.17 -2.84 14.97 2.25 0.03 -2.80 16 20 C -0.11 -1.11 5.64 -24.55 -0.14 -1.25 16 21 C -0.12 -1.04 6.62 -24.88 -0.16 -1.20 16 22 C -0.12 -1.05 6.80 -25.62 -0.17 -1.22 16 23 C -0.11 -1.23 5.49 -25.62 -0.14 -1.38 16 24 C -0.15 -2.37 7.29 -25.83 -0.19 -2.56 16 25 C -0.13 -1.84 8.00 -25.82 -0.21 -2.05 16 26 C -0.15 -2.04 7.20 -25.92 -0.19 -2.22 16 27 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 28 H 0.36 7.81 5.80 -40.82 -0.24 7.57 16 29 H 0.08 1.60 7.85 -51.93 -0.41 1.19 16 30 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 31 H 0.40 6.43 6.37 -40.82 -0.26 6.17 16 32 H 0.08 0.81 7.63 -51.93 -0.40 0.42 16 33 H 0.09 0.79 7.42 -51.93 -0.39 0.40 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.82 7.29 -51.93 -0.38 0.44 16 39 H 0.10 1.32 6.86 -51.93 -0.36 0.96 16 40 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 41 H 0.08 1.51 7.87 -51.93 -0.41 1.10 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 45 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 366.55 15.07 5.52 5.52 Total: -1.00 -31.33 366.55 -6.96 -38.29 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -6.63 Total: 12.33 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.59 Total: 0.49 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.25 Total: -55.71 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 9 Polarization: -8.16 SS G_CDS: 0.11 Total: -8.05 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.70 Total: 16.93 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.33 -6.96 -38.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280546711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.934 kcal (2) G-P(sol) polarization free energy of solvation -31.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds