Wall clock time and date at job start Tue Mar 31 2020 22:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99820 * 2 1 4 4 H 1.48502 * 109.47540 * 270.00265 * 3 2 1 5 5 H 1.48502 * 109.47253 * 30.00628 * 3 2 1 6 6 H 1.48504 * 109.47174 * 150.00414 * 3 2 1 7 7 C 1.38812 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99958 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00187 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00319 * 173.90460 * 9 7 2 11 11 C 1.53008 * 112.84467 * 294.91353 * 10 9 7 12 12 N 1.46499 * 109.46770 * 294.05941 * 11 10 9 13 13 C 1.34783 * 119.99579 * 185.04790 * 12 11 10 14 14 O 1.21274 * 119.99894 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99740 * 180.02562 * 13 12 11 16 16 C 1.52994 * 110.43434 * 59.30299 * 15 13 12 17 17 F 1.39898 * 109.47444 * 60.69802 * 16 15 13 18 18 F 1.39901 * 109.47560 * 180.70018 * 16 15 13 19 19 F 1.39908 * 109.47516 * 300.69916 * 16 15 13 20 20 C 1.54891 * 110.48792 * 296.76011 * 15 13 12 21 21 C 1.55237 * 102.58691 * 279.18925 * 20 15 13 22 22 C 1.54266 * 104.23041 * 322.08449 * 21 20 15 23 23 C 1.53866 * 106.59924 * 23.61160 * 22 21 20 24 24 C 1.53778 * 113.61432 * 66.10476 * 10 9 7 25 25 C 1.53957 * 87.01927 * 89.23373 * 24 10 9 26 26 C 1.53775 * 113.61759 * 163.71652 * 10 9 7 27 27 H 0.96999 * 120.00189 * 359.97438 * 1 2 3 28 28 H 0.97005 * 119.99806 * 353.90400 * 9 7 2 29 29 H 1.08992 * 109.47226 * 54.06463 * 11 10 9 30 30 H 1.09004 * 109.46470 * 174.06720 * 11 10 9 31 31 H 0.96997 * 120.00212 * 5.06059 * 12 11 10 32 32 H 1.08996 * 110.75448 * 37.57983 * 20 15 13 33 33 H 1.08997 * 110.75567 * 160.94729 * 20 15 13 34 34 H 1.09002 * 110.46569 * 203.39438 * 21 20 15 35 35 H 1.09003 * 110.58171 * 80.83065 * 21 20 15 36 36 H 1.08997 * 110.02988 * 264.32201 * 22 21 20 37 37 H 1.08997 * 110.02826 * 142.90197 * 22 21 20 38 38 H 1.09002 * 110.03176 * 240.71090 * 23 22 21 39 39 H 1.09006 * 110.07253 * 119.30922 * 23 22 21 40 40 H 1.09001 * 113.61402 * 203.75454 * 24 10 9 41 41 H 1.09001 * 113.61842 * 334.65288 * 24 10 9 42 42 H 1.08998 * 113.53221 * 270.81188 * 25 24 10 43 43 H 1.08994 * 113.66943 * 139.93225 * 25 24 10 44 44 H 1.09003 * 113.61580 * 25.34457 * 26 10 9 45 45 H 1.09000 * 113.61720 * 156.25140 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1123 -2.4637 0.1331 11 6 3.8955 -3.1350 1.4908 12 7 4.4779 -2.3021 2.5459 13 6 4.4970 -2.7434 3.8193 14 8 4.0325 -3.8301 4.0915 15 6 5.0956 -1.8864 4.9048 16 6 4.3631 -0.5460 4.9920 17 9 3.0163 -0.7695 5.2975 18 9 4.9443 0.2389 5.9937 19 9 4.4587 0.1186 3.7646 20 6 6.6065 -1.6627 4.6477 21 6 7.2389 -2.9748 5.1846 22 6 6.4066 -3.3112 6.4392 23 6 5.0439 -2.6191 6.2613 24 6 3.9256 -3.4144 -1.0611 25 6 5.1400 -2.7182 -1.7021 26 6 5.5914 -2.3636 -0.2754 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3667 -0.0903 29 1 2.8272 -3.2548 1.6704 30 1 4.3763 -4.1133 1.4932 31 1 4.8496 -1.4330 2.3281 32 1 6.8036 -1.5437 3.5823 33 1 6.9702 -0.8010 5.2074 34 1 8.2833 -2.8131 5.4516 35 1 7.1540 -3.7715 4.4456 36 1 6.9050 -2.9308 7.3309 37 1 6.2703 -4.3897 6.5186 38 1 4.8809 -1.9029 7.0666 39 1 4.2455 -3.3612 6.2547 40 1 4.1016 -4.4620 -0.8168 41 1 2.9936 -3.2561 -1.6037 42 1 4.8755 -1.8496 -2.3050 43 1 5.8152 -3.4020 -2.2164 44 1 6.0024 -1.3580 -0.1848 45 1 6.2237 -3.1233 0.1840 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280546711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:40 Heat of formation + Delta-G solvation = -183.433709 kcal Electronic energy + Delta-G solvation = -31885.878003 eV Core-core repulsion = 27295.039157 eV Total energy + Delta-G solvation = -4590.838846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 26.64 seconds Orbital eigenvalues (eV) -51.35591 -48.84979 -48.80593 -41.59189 -40.29811 -38.17557 -35.54980 -35.26554 -32.60767 -31.87404 -29.94482 -28.77971 -26.70470 -25.95336 -25.57380 -23.90183 -22.72895 -21.61561 -21.11840 -20.02880 -19.80456 -19.51377 -19.35553 -19.15243 -17.63683 -17.24139 -16.69665 -16.42515 -16.17549 -15.94907 -15.69078 -15.58581 -15.53141 -15.27944 -15.18619 -14.97671 -14.86138 -14.76482 -14.63639 -14.40947 -14.26724 -13.90265 -13.19943 -13.11241 -13.00241 -12.78128 -12.56185 -12.52609 -12.41628 -12.24678 -12.16694 -12.11745 -11.82080 -11.66128 -11.58875 -11.39849 -11.14473 -10.96823 -10.79985 -10.11389 -9.32060 -8.01541 -5.35754 1.04625 1.34447 1.38582 1.45062 1.73388 1.90564 2.47416 2.56212 2.65722 2.88792 3.28235 3.38864 3.41859 3.43055 3.58372 3.74454 3.93730 4.01859 4.10483 4.16334 4.19771 4.29919 4.37013 4.57136 4.62373 4.70541 4.73220 4.84141 4.90565 4.92201 4.96627 4.98801 5.12467 5.14588 5.20079 5.26363 5.35602 5.40332 5.43592 5.63811 5.83597 6.22350 6.38256 7.01161 7.08940 7.83221 8.01270 9.20091 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012100 B = 0.005381 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.492166 B = 5201.826030 C = 6431.051226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.062 4.062 3 Si 0.943 3.057 4 H -0.276 1.276 5 H -0.306 1.306 6 H -0.244 1.244 7 C -0.211 4.211 8 H 0.053 0.947 9 N -0.724 5.724 10 C 0.158 3.842 11 C 0.128 3.872 12 N -0.697 5.697 13 C 0.523 3.477 14 O -0.556 6.556 15 C -0.132 4.132 16 C 0.459 3.541 17 F -0.192 7.192 18 F -0.165 7.165 19 F -0.182 7.182 20 C -0.109 4.109 21 C -0.115 4.115 22 C -0.113 4.113 23 C -0.110 4.110 24 C -0.150 4.150 25 C -0.120 4.120 26 C -0.125 4.125 27 H 0.254 0.746 28 H 0.368 0.632 29 H 0.026 0.974 30 H 0.083 0.917 31 H 0.407 0.593 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.064 -4.142 10.176 24.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.254 4.254 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.233 1.233 6 H -0.168 1.168 7 C -0.342 4.342 8 H 0.071 0.929 9 N -0.366 5.366 10 C 0.067 3.933 11 C 0.002 3.998 12 N -0.348 5.348 13 C 0.307 3.693 14 O -0.434 6.434 15 C -0.137 4.137 16 C 0.405 3.595 17 F -0.174 7.174 18 F -0.146 7.146 19 F -0.164 7.164 20 C -0.147 4.147 21 C -0.152 4.152 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.190 4.190 25 C -0.158 4.158 26 C -0.162 4.162 27 H 0.063 0.937 28 H 0.202 0.798 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.244 0.756 32 H 0.110 0.890 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 21.501 -4.953 10.355 24.373 hybrid contribution -1.146 1.879 -0.273 2.218 sum 20.355 -3.074 10.082 22.922 Atomic orbital electron populations 1.69886 1.07257 1.26342 1.60083 1.25432 0.95913 1.00990 1.03016 0.85579 0.79123 0.80133 0.78075 1.20254 1.23347 1.16818 1.18766 0.82397 0.92897 1.40181 0.92915 1.42314 1.02146 1.03726 1.88430 1.21144 0.93868 0.87264 0.91065 1.21749 0.96740 0.93882 0.87423 1.45898 1.59833 1.22242 1.06807 1.19930 0.78927 0.86924 0.83523 1.90663 1.47222 1.23141 1.82417 1.23167 1.00495 0.90047 0.99961 1.20410 0.77483 0.87760 0.73864 1.93212 1.36367 1.94795 1.93014 1.93177 1.83749 1.76660 1.61024 1.93174 1.95928 1.83010 1.44266 1.22886 0.85908 1.01819 1.04064 1.22408 1.00844 0.95020 0.96948 1.22084 0.92682 1.00780 0.99492 1.22242 1.01577 0.99899 0.91040 1.23350 0.98960 0.98993 0.97680 1.22630 0.96749 1.00309 0.96062 1.23156 0.93342 1.03072 0.96666 0.93667 0.79803 0.95537 0.89916 0.75630 0.89036 0.87114 0.87533 0.91999 0.88649 0.91182 0.89144 0.90856 0.88649 0.93836 0.91540 0.89232 0.90691 0.87079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.99 13.97 21.65 0.30 -63.69 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 3 Si 0.94 45.14 27.68 68.60 1.90 47.04 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.31 -15.34 7.11 99.48 0.71 -14.64 16 6 H -0.24 -10.29 6.61 99.48 0.66 -9.63 16 7 C -0.21 -11.66 9.55 84.03 0.80 -10.86 16 8 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 9 N -0.72 -31.07 4.98 -300.97 -1.50 -32.57 16 10 C 0.16 5.31 0.77 4.13 0.00 5.31 16 11 C 0.13 4.50 5.04 86.38 0.44 4.94 16 12 N -0.70 -22.40 4.93 -463.05 -2.28 -24.69 16 13 C 0.52 16.75 6.09 87.66 0.53 17.28 16 14 O -0.56 -21.22 15.42 -3.01 -0.05 -21.27 16 15 C -0.13 -3.26 0.32 -51.86 -0.02 -3.27 16 16 C 0.46 13.16 2.23 71.98 0.16 13.32 16 17 F -0.19 -6.78 16.88 44.97 0.76 -6.02 16 18 F -0.16 -3.98 15.78 44.97 0.71 -3.27 16 19 F -0.18 -5.74 14.97 44.97 0.67 -5.06 16 20 C -0.11 -1.78 5.64 32.01 0.18 -1.60 16 21 C -0.11 -1.56 6.62 31.79 0.21 -1.35 16 22 C -0.11 -1.70 6.80 31.32 0.21 -1.49 16 23 C -0.11 -2.38 5.49 31.31 0.17 -2.21 16 24 C -0.15 -4.71 7.29 31.18 0.23 -4.48 16 25 C -0.12 -3.02 8.00 31.18 0.25 -2.77 16 26 C -0.12 -2.96 7.20 31.12 0.22 -2.74 16 27 H 0.25 15.91 8.31 -92.71 -0.77 15.14 16 28 H 0.37 15.12 5.80 -92.70 -0.54 14.58 16 29 H 0.03 1.18 7.85 -2.39 -0.02 1.16 16 30 H 0.08 2.56 8.05 -2.39 -0.02 2.55 16 31 H 0.41 12.25 6.37 -92.71 -0.59 11.66 16 32 H 0.09 1.39 7.63 -2.39 -0.02 1.38 16 33 H 0.11 1.42 7.42 -2.39 -0.02 1.40 16 34 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.71 7.29 -2.39 -0.02 1.70 16 39 H 0.07 1.97 6.86 -2.38 -0.02 1.96 16 40 H 0.10 2.53 8.04 -2.39 -0.02 2.51 16 41 H 0.04 1.67 7.87 -2.39 -0.02 1.66 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.07 1.67 8.09 -2.39 -0.02 1.65 16 45 H 0.11 2.07 8.10 -2.39 -0.02 2.05 16 Total: -1.00 -73.09 366.55 4.23 -68.87 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.15 Total: 33.77 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 3.86 Total: 6.88 kcal Atomic # 7 Polarization: -117.46 SS G_CDS: -3.48 Total: -120.94 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.05 Total: -21.27 kcal Atomic # 9 Polarization: -16.49 SS G_CDS: 2.14 Total: -14.35 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Total: -73.09 4.23 -68.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280546711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.567 kcal (2) G-P(sol) polarization free energy of solvation -73.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.64 seconds