Wall clock time and date at job start Tue Mar 31 2020 21:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48493 * 109.47623 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.47051 * 30.00767 * 3 2 1 6 6 H 1.48502 * 109.46771 * 149.99860 * 3 2 1 7 7 C 1.38813 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99566 * 359.97438 * 7 2 1 10 10 C 1.47086 * 125.63204 * 0.02917 * 9 7 2 11 11 C 1.54461 * 107.30037 * 180.72242 * 10 9 7 12 12 C 1.54364 * 102.86893 * 21.47202 * 11 10 9 13 13 C 1.47579 * 125.62567 * 179.72242 * 9 7 2 14 14 C 1.52063 * 110.59348 * 83.52824 * 12 11 10 15 15 C 1.53187 * 109.72527 * 182.33154 * 14 12 11 16 16 C 1.53200 * 109.26667 * 300.04584 * 15 14 12 17 17 N 1.46943 * 108.89588 * 55.39220 * 16 15 14 18 18 C 1.34778 * 120.70945 * 125.66619 * 17 16 15 19 19 O 1.21275 * 120.00199 * 180.02562 * 18 17 16 20 20 C 1.50701 * 119.99627 * 0.02562 * 18 17 16 21 21 C 1.53007 * 109.46874 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47276 * 179.97438 * 21 20 18 23 23 F 1.39908 * 109.46614 * 60.00498 * 22 21 20 24 24 F 1.39899 * 109.47384 * 180.02562 * 22 21 20 25 25 F 1.39902 * 109.47627 * 300.00683 * 22 21 20 26 26 C 1.47095 * 118.57815 * 305.68388 * 17 16 15 27 27 H 0.97008 * 120.00169 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.87570 * 300.14839 * 10 9 7 29 29 H 1.08997 * 109.87650 * 61.14611 * 10 9 7 30 30 H 1.08998 * 110.73277 * 139.82048 * 11 10 9 31 31 H 1.09001 * 110.73157 * 262.95075 * 11 10 9 32 32 H 1.09005 * 110.37904 * 275.80335 * 13 9 7 33 33 H 1.09001 * 110.38048 * 38.15228 * 13 9 7 34 34 H 1.09001 * 109.43118 * 302.40880 * 14 12 11 35 35 H 1.09002 * 109.43167 * 62.25173 * 14 12 11 36 36 H 1.09003 * 109.50365 * 180.11715 * 15 14 12 37 37 H 1.08994 * 109.50738 * 59.99102 * 15 14 12 38 38 H 1.09001 * 109.56667 * 295.57133 * 16 15 14 39 39 H 1.08990 * 109.56599 * 175.21991 * 16 15 14 40 40 H 1.09000 * 109.47627 * 299.99910 * 20 18 17 41 41 H 1.08997 * 109.47238 * 60.00752 * 20 18 17 42 42 H 1.08994 * 109.47449 * 300.00264 * 21 20 18 43 43 H 1.09004 * 109.46741 * 60.00080 * 21 20 18 44 44 H 1.08990 * 109.56896 * 292.37659 * 26 17 16 45 45 H 1.09005 * 109.56581 * 172.02548 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1382 -2.5323 -0.0006 11 6 -0.4507 -4.0449 0.0180 12 6 0.8506 -4.6578 0.5783 13 6 1.9345 -3.7323 -0.0069 14 6 0.8569 -4.6024 2.0979 15 6 2.1799 -5.1617 2.6302 16 6 2.3353 -6.6151 2.1713 17 7 2.2214 -6.6666 0.7072 18 6 3.1885 -7.2364 -0.0389 19 8 3.0815 -7.2714 -1.2464 20 6 4.4029 -7.8299 0.6276 21 6 5.3377 -8.4075 -0.4371 22 6 6.5709 -9.0096 0.2393 23 9 6.1733 -10.0277 1.1126 24 9 7.4260 -9.5372 -0.7342 25 9 7.2414 -8.0140 0.9582 26 6 1.0294 -6.0826 0.0732 27 1 -0.4851 0.8401 -0.0004 28 1 -0.5576 -2.0562 0.8858 29 1 -0.5555 -2.0764 -0.8984 30 1 -1.2923 -4.2569 0.6773 31 1 -0.6499 -4.4101 -0.9895 32 1 2.1806 -4.0327 -1.0254 33 1 2.8260 -3.7481 0.6202 34 1 0.7433 -3.5683 2.4235 35 1 0.0296 -5.1967 2.4859 36 1 2.1797 -5.1222 3.7195 37 1 3.0079 -4.5675 2.2440 38 1 1.5516 -7.2254 2.6201 39 1 3.3122 -6.9912 2.4749 40 1 4.9252 -7.0546 1.1882 41 1 4.0928 -8.6235 1.3073 42 1 4.8153 -9.1829 -0.9974 43 1 5.6478 -7.6142 -1.1173 44 1 0.1515 -6.6745 0.3317 45 1 1.1594 -6.0727 -1.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281086925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:50 Heat of formation + Delta-G solvation = -174.369629 kcal Electronic energy + Delta-G solvation = -30304.544769 eV Core-core repulsion = 25714.098971 eV Total energy + Delta-G solvation = -4590.445798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.37442 -47.87165 -47.84853 -40.53317 -38.59792 -35.92442 -34.09179 -32.99705 -31.91913 -30.29798 -28.70984 -27.47351 -25.66253 -25.22451 -23.74595 -22.65292 -22.08583 -20.22255 -19.47323 -18.84044 -18.53768 -18.06878 -17.95875 -16.90633 -16.48276 -15.98345 -15.80776 -15.05715 -14.76900 -14.73701 -14.61323 -14.29344 -14.19537 -14.01578 -14.00376 -13.90282 -13.72241 -13.43252 -13.20768 -13.04734 -12.74546 -12.46772 -12.06929 -11.97080 -11.87144 -11.73464 -11.65188 -11.12755 -10.91741 -10.87657 -10.77463 -10.65815 -10.16289 -10.12285 -9.94720 -9.78671 -9.64544 -9.62067 -8.57740 -8.54217 -6.79410 -5.69522 -3.02024 2.41662 2.52949 2.91671 3.40609 3.45802 3.47232 3.53949 3.70882 3.78690 4.34972 4.50221 4.54583 4.60710 4.75222 5.00416 5.01761 5.07061 5.15145 5.28044 5.30231 5.39134 5.44781 5.52518 5.54942 5.74339 5.86633 5.87343 5.91893 5.97816 6.09156 6.28522 6.35253 6.43895 6.52155 6.62610 6.70956 6.80668 6.95256 7.35800 7.57929 7.64429 7.84258 8.07814 8.28016 9.24514 9.84944 10.51727 11.42204 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002978 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.878702 B = 9399.341037 C =10283.251116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.225 4.225 8 H 0.075 0.925 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.134 4.134 12 C -0.087 4.087 13 C 0.151 3.849 14 C -0.096 4.096 15 C -0.137 4.137 16 C 0.106 3.894 17 N -0.604 5.604 18 C 0.520 3.480 19 O -0.541 6.541 20 C -0.146 4.146 21 C -0.151 4.151 22 C 0.453 3.547 23 F -0.185 7.185 24 F -0.183 7.183 25 F -0.183 7.183 26 C 0.130 3.870 27 H 0.251 0.749 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.015 0.985 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.064 0.936 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 -19.893 5.523 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.353 4.353 8 H 0.093 0.907 9 N -0.330 5.330 10 C 0.056 3.944 11 C -0.173 4.173 12 C -0.088 4.088 13 C 0.025 3.975 14 C -0.134 4.134 15 C -0.175 4.175 16 C -0.017 4.017 17 N -0.336 5.336 18 C 0.308 3.692 19 O -0.418 6.418 20 C -0.186 4.186 21 C -0.189 4.189 22 C 0.398 3.602 23 F -0.167 7.167 24 F -0.165 7.165 25 F -0.164 7.164 26 C 0.007 3.993 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.083 0.917 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.549 -19.689 4.908 21.322 hybrid contribution 0.632 0.895 0.193 1.113 sum 7.181 -18.794 5.102 20.756 Atomic orbital electron populations 1.69961 1.04829 1.24899 1.57340 1.24770 0.95690 0.97548 1.02448 0.86149 0.78570 0.83661 0.77576 1.21661 1.21723 1.20767 1.19034 0.90349 0.82500 1.43461 0.90677 1.44513 1.01601 0.99816 1.87117 1.21137 0.84379 0.87988 1.00936 1.22827 0.95233 0.99697 0.99547 1.21399 0.98358 0.93371 0.95714 1.21456 0.93822 0.85718 0.96459 1.21220 0.95802 1.02338 0.94001 1.21991 0.99972 0.94974 1.00556 1.21818 1.02156 0.98161 0.79544 1.48122 1.21034 1.57288 1.07202 1.20148 0.83574 0.78297 0.87218 1.90722 1.78667 1.58512 1.13940 1.21656 0.95318 1.02814 0.98831 1.22622 0.92225 1.04661 0.99419 1.20618 0.86004 0.76381 0.77150 1.93182 1.90602 1.61745 1.71161 1.93196 1.73251 1.87256 1.62776 1.93199 1.82666 1.61219 1.79361 1.21543 0.85687 0.92863 0.99162 0.93843 0.93697 0.94073 0.92029 0.92337 0.96700 0.94492 0.90207 0.92648 0.90903 0.90755 0.91202 0.90107 0.87425 0.87690 0.86446 0.86261 0.91746 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.98 10.30 55.49 0.57 -26.41 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.27 10.28 -15.06 -0.15 -6.42 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.23 3.39 -170.32 -0.58 -15.81 16 10 C 0.18 4.29 5.03 -2.96 -0.01 4.28 16 11 C -0.13 -2.40 5.89 -25.25 -0.15 -2.55 16 12 C -0.09 -1.41 0.54 -154.10 -0.08 -1.50 16 13 C 0.15 3.12 5.97 -2.88 -0.02 3.10 16 14 C -0.10 -1.39 4.64 -27.11 -0.13 -1.52 16 15 C -0.14 -1.59 5.92 -26.53 -0.16 -1.75 16 16 C 0.11 0.99 6.32 -3.70 -0.02 0.97 16 17 N -0.60 -7.32 2.88 -173.21 -0.50 -7.82 16 18 C 0.52 6.46 7.70 -10.98 -0.08 6.38 16 19 O -0.54 -8.66 15.41 5.56 0.09 -8.58 16 20 C -0.15 -1.23 3.80 -27.88 -0.11 -1.34 16 21 C -0.15 -1.25 4.55 -26.73 -0.12 -1.37 16 22 C 0.45 3.90 3.16 37.16 0.12 4.02 16 23 F -0.19 -1.63 16.80 2.25 0.04 -1.59 16 24 F -0.18 -1.77 17.32 2.25 0.04 -1.73 16 25 F -0.18 -1.74 16.80 2.25 0.04 -1.71 16 26 C 0.13 1.82 5.12 -4.11 -0.02 1.79 16 27 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.04 1.17 7.40 -51.93 -0.38 0.79 16 29 H 0.04 1.11 7.48 -51.93 -0.39 0.72 16 30 H 0.06 0.98 8.01 -51.93 -0.42 0.56 16 31 H 0.06 1.01 8.01 -51.93 -0.42 0.59 16 32 H 0.02 0.34 7.86 -51.93 -0.41 -0.07 16 33 H 0.04 0.76 6.12 -51.93 -0.32 0.44 16 34 H 0.08 1.42 7.85 -51.93 -0.41 1.02 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.01 6.35 -51.93 -0.33 0.68 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.56 5.94 -51.93 -0.31 0.25 16 40 H 0.11 0.82 7.37 -51.93 -0.38 0.43 16 41 H 0.10 0.67 7.59 -51.93 -0.39 0.27 16 42 H 0.12 0.93 8.10 -51.93 -0.42 0.51 16 43 H 0.12 1.05 8.10 -51.93 -0.42 0.63 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 1.49 6.83 -51.93 -0.35 1.14 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -31.99 359.89 -7.53 -39.52 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -6.59 Total: -2.21 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.04 Total: 3.76 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.50 Total: -50.03 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.11 Total: -5.02 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.99 -7.53 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281086925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.852 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds