Wall clock time and date at job start Tue Mar 31 2020 21:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48493 * 109.47623 * 270.00102 * 3 2 1 5 5 H 1.48500 * 109.47051 * 30.00767 * 3 2 1 6 6 H 1.48502 * 109.46771 * 149.99860 * 3 2 1 7 7 C 1.38813 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00109 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99566 * 359.97438 * 7 2 1 10 10 C 1.47086 * 125.63204 * 0.02917 * 9 7 2 11 11 C 1.54461 * 107.30037 * 180.72242 * 10 9 7 12 12 C 1.54364 * 102.86893 * 21.47202 * 11 10 9 13 13 C 1.47579 * 125.62567 * 179.72242 * 9 7 2 14 14 C 1.52063 * 110.59348 * 83.52824 * 12 11 10 15 15 C 1.53187 * 109.72527 * 182.33154 * 14 12 11 16 16 C 1.53200 * 109.26667 * 300.04584 * 15 14 12 17 17 N 1.46943 * 108.89588 * 55.39220 * 16 15 14 18 18 C 1.34778 * 120.70945 * 125.66619 * 17 16 15 19 19 O 1.21275 * 120.00199 * 180.02562 * 18 17 16 20 20 C 1.50701 * 119.99627 * 0.02562 * 18 17 16 21 21 C 1.53007 * 109.46874 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47276 * 179.97438 * 21 20 18 23 23 F 1.39908 * 109.46614 * 60.00498 * 22 21 20 24 24 F 1.39899 * 109.47384 * 180.02562 * 22 21 20 25 25 F 1.39902 * 109.47627 * 300.00683 * 22 21 20 26 26 C 1.47095 * 118.57815 * 305.68388 * 17 16 15 27 27 H 0.97008 * 120.00169 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.87570 * 300.14839 * 10 9 7 29 29 H 1.08997 * 109.87650 * 61.14611 * 10 9 7 30 30 H 1.08998 * 110.73277 * 139.82048 * 11 10 9 31 31 H 1.09001 * 110.73157 * 262.95075 * 11 10 9 32 32 H 1.09005 * 110.37904 * 275.80335 * 13 9 7 33 33 H 1.09001 * 110.38048 * 38.15228 * 13 9 7 34 34 H 1.09001 * 109.43118 * 302.40880 * 14 12 11 35 35 H 1.09002 * 109.43167 * 62.25173 * 14 12 11 36 36 H 1.09003 * 109.50365 * 180.11715 * 15 14 12 37 37 H 1.08994 * 109.50738 * 59.99102 * 15 14 12 38 38 H 1.09001 * 109.56667 * 295.57133 * 16 15 14 39 39 H 1.08990 * 109.56599 * 175.21991 * 16 15 14 40 40 H 1.09000 * 109.47627 * 299.99910 * 20 18 17 41 41 H 1.08997 * 109.47238 * 60.00752 * 20 18 17 42 42 H 1.08994 * 109.47449 * 300.00264 * 21 20 18 43 43 H 1.09004 * 109.46741 * 60.00080 * 21 20 18 44 44 H 1.08990 * 109.56896 * 292.37659 * 26 17 16 45 45 H 1.09005 * 109.56581 * 172.02548 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1382 -2.5323 -0.0006 11 6 -0.4507 -4.0449 0.0180 12 6 0.8506 -4.6578 0.5783 13 6 1.9345 -3.7323 -0.0069 14 6 0.8569 -4.6024 2.0979 15 6 2.1799 -5.1617 2.6302 16 6 2.3353 -6.6151 2.1713 17 7 2.2214 -6.6666 0.7072 18 6 3.1885 -7.2364 -0.0389 19 8 3.0815 -7.2714 -1.2464 20 6 4.4029 -7.8299 0.6276 21 6 5.3377 -8.4075 -0.4371 22 6 6.5709 -9.0096 0.2393 23 9 6.1733 -10.0277 1.1126 24 9 7.4260 -9.5372 -0.7342 25 9 7.2414 -8.0140 0.9582 26 6 1.0294 -6.0826 0.0732 27 1 -0.4851 0.8401 -0.0004 28 1 -0.5576 -2.0562 0.8858 29 1 -0.5555 -2.0764 -0.8984 30 1 -1.2923 -4.2569 0.6773 31 1 -0.6499 -4.4101 -0.9895 32 1 2.1806 -4.0327 -1.0254 33 1 2.8260 -3.7481 0.6202 34 1 0.7433 -3.5683 2.4235 35 1 0.0296 -5.1967 2.4859 36 1 2.1797 -5.1222 3.7195 37 1 3.0079 -4.5675 2.2440 38 1 1.5516 -7.2254 2.6201 39 1 3.3122 -6.9912 2.4749 40 1 4.9252 -7.0546 1.1882 41 1 4.0928 -8.6235 1.3073 42 1 4.8153 -9.1829 -0.9974 43 1 5.6478 -7.6142 -1.1173 44 1 0.1515 -6.6745 0.3317 45 1 1.1594 -6.0727 -1.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281086925.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:49 Heat of formation + Delta-G solvation = -193.306177 kcal Electronic energy + Delta-G solvation = -30305.365919 eV Core-core repulsion = 25714.098971 eV Total energy + Delta-G solvation = -4591.266948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -51.07146 -48.58074 -48.54114 -41.62036 -39.88437 -37.27623 -35.00478 -34.56086 -33.07314 -32.00545 -30.28651 -28.43616 -27.37760 -26.26929 -25.23789 -23.45175 -23.23609 -21.99768 -20.51105 -19.53125 -19.47984 -19.12746 -18.85682 -18.67791 -17.40836 -16.96772 -16.79933 -16.63992 -16.31869 -15.81754 -15.47729 -15.44571 -15.04531 -14.99339 -14.87613 -14.74941 -14.70290 -14.59805 -14.45005 -14.17108 -13.91078 -13.73130 -13.45413 -13.26645 -13.16178 -12.81609 -12.73150 -12.71372 -12.37819 -12.23499 -12.13445 -12.07727 -12.02515 -11.69506 -11.57424 -11.31096 -11.14353 -10.77653 -10.70399 -9.55807 -8.89320 -7.86117 -5.20905 1.43016 1.45129 1.53547 1.59402 1.70579 2.07328 2.47767 2.84828 3.02130 3.11818 3.31509 3.54842 3.60543 3.68491 3.86882 3.95743 3.97893 4.00806 4.14260 4.23054 4.35161 4.42560 4.57139 4.60706 4.65374 4.67792 4.76974 4.80782 4.83233 4.86575 4.91919 4.98197 5.06151 5.18071 5.27934 5.42350 5.50300 5.53173 5.57026 5.69141 5.78403 6.19101 6.44825 7.10008 7.15076 7.77336 8.42498 9.24059 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002978 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.878702 B = 9399.341037 C =10283.251116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.976 3.024 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.624 5.624 10 C 0.189 3.811 11 C -0.122 4.122 12 C -0.071 4.071 13 C 0.152 3.848 14 C -0.094 4.094 15 C -0.133 4.133 16 C 0.107 3.893 17 N -0.606 5.606 18 C 0.514 3.486 19 O -0.585 6.585 20 C -0.139 4.139 21 C -0.147 4.147 22 C 0.460 3.540 23 F -0.183 7.183 24 F -0.191 7.191 25 F -0.188 7.188 26 C 0.137 3.863 27 H 0.246 0.754 28 H 0.014 0.986 29 H -0.002 1.002 30 H 0.090 0.910 31 H 0.064 0.936 32 H -0.006 1.006 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.047 0.953 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.136 0.864 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.350 -22.235 7.522 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.804 3.196 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.350 5.350 10 C 0.064 3.936 11 C -0.161 4.161 12 C -0.073 4.073 13 C 0.027 3.973 14 C -0.131 4.131 15 C -0.171 4.171 16 C -0.015 4.015 17 N -0.338 5.338 18 C 0.304 3.696 19 O -0.466 6.466 20 C -0.178 4.178 21 C -0.186 4.186 22 C 0.406 3.594 23 F -0.164 7.164 24 F -0.172 7.172 25 F -0.169 7.169 26 C 0.014 3.986 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.016 0.984 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.012 0.988 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.154 0.846 42 H 0.140 0.860 43 H 0.128 0.872 44 H 0.113 0.887 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.293 -22.062 6.937 24.250 hybrid contribution 0.426 1.645 -0.455 1.759 sum 7.719 -20.416 6.483 22.769 Atomic orbital electron populations 1.70187 1.06193 1.25182 1.58288 1.25603 0.96607 1.00830 1.02645 0.85117 0.77757 0.79317 0.77391 1.21591 1.21758 1.19356 1.19392 0.90743 0.83982 1.43021 0.90680 1.44814 1.02476 1.00903 1.86771 1.20888 0.83569 0.91814 0.97350 1.22714 0.97244 0.95164 1.00992 1.21305 0.95025 0.93881 0.97059 1.21547 0.95409 0.84738 0.95579 1.21196 0.98936 1.00759 0.92245 1.21962 0.96969 0.96122 1.02034 1.22074 1.05189 0.96735 0.77461 1.48236 1.20290 1.56695 1.08561 1.20826 0.84258 0.77734 0.86794 1.90710 1.79581 1.60226 1.16038 1.21688 0.93387 1.03883 0.98868 1.22569 0.92111 1.04519 0.99394 1.20553 0.85764 0.76214 0.76898 1.93187 1.90526 1.61661 1.71057 1.93184 1.73525 1.87356 1.63136 1.93193 1.82824 1.61441 1.79454 1.21306 0.87905 0.91526 0.97860 0.94425 0.96777 0.98371 0.89166 0.91681 0.98814 0.94366 0.94306 0.89546 0.88276 0.93398 0.88238 0.86953 0.86121 0.84591 0.86049 0.87236 0.88741 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.96 10.30 21.65 0.22 -57.74 16 2 C -0.06 -3.71 5.49 84.86 0.47 -3.24 16 3 Si 0.98 46.64 29.55 68.60 2.03 48.67 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.24 -13.98 10.28 84.03 0.86 -13.12 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.62 -32.82 3.39 -692.78 -2.35 -35.17 16 10 C 0.19 9.44 5.03 86.76 0.44 9.88 16 11 C -0.12 -4.36 5.89 31.55 0.19 -4.18 16 12 C -0.07 -2.25 0.54 -51.92 -0.03 -2.28 16 13 C 0.15 6.44 5.97 86.54 0.52 6.96 16 14 C -0.09 -2.53 4.64 30.35 0.14 -2.39 16 15 C -0.13 -2.67 5.92 30.72 0.18 -2.49 16 16 C 0.11 1.48 6.32 86.36 0.55 2.02 16 17 N -0.61 -12.88 2.88 -820.29 -2.36 -15.24 16 18 C 0.51 11.66 7.70 87.66 0.68 12.34 16 19 O -0.58 -18.42 15.41 -3.02 -0.05 -18.47 16 20 C -0.14 -1.88 3.80 29.85 0.11 -1.77 16 21 C -0.15 -2.17 4.55 30.60 0.14 -2.03 16 22 C 0.46 6.95 3.16 71.98 0.23 7.18 16 23 F -0.18 -2.68 16.80 44.97 0.76 -1.92 16 24 F -0.19 -3.41 17.32 44.97 0.78 -2.63 16 25 F -0.19 -3.17 16.80 44.97 0.76 -2.42 16 26 C 0.14 3.56 5.12 86.01 0.44 4.00 16 27 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 28 H 0.01 0.78 7.40 -2.38 -0.02 0.76 16 29 H 0.00 -0.11 7.48 -2.39 -0.02 -0.13 16 30 H 0.09 2.71 8.01 -2.39 -0.02 2.69 16 31 H 0.06 2.23 8.01 -2.39 -0.02 2.21 16 32 H -0.01 -0.27 7.86 -2.38 -0.02 -0.29 16 33 H 0.04 1.60 6.12 -2.39 -0.01 1.58 16 34 H 0.04 1.37 7.85 -2.39 -0.02 1.35 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.22 6.35 -2.39 -0.02 1.21 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 0.91 5.94 -2.39 -0.01 0.90 16 40 H 0.12 1.38 7.37 -2.39 -0.02 1.37 16 41 H 0.14 1.05 7.59 -2.39 -0.02 1.03 16 42 H 0.12 1.71 8.10 -2.39 -0.02 1.69 16 43 H 0.11 1.85 8.10 -2.39 -0.02 1.83 16 44 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 2.14 6.83 -2.38 -0.02 2.12 16 Total: -1.00 -74.81 359.89 5.69 -69.12 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 1.00 Total: 4.92 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 4.90 Total: 10.87 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -4.49 Total: -108.14 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.05 Total: -18.47 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 2.29 Total: -6.97 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -74.81 5.69 -69.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281086925.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.189 kcal (2) G-P(sol) polarization free energy of solvation -74.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds