Wall clock time and date at job start Tue Mar 31 2020 21:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48505 * 109.46514 * 239.99631 * 3 2 1 5 5 H 1.48497 * 109.46924 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47286 * 119.99583 * 3 2 1 7 7 C 1.38816 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00115 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99534 * 0.02562 * 7 2 1 10 10 C 1.47082 * 125.62865 * 0.02562 * 9 7 2 11 11 C 1.54468 * 107.42506 * 178.88632 * 10 9 7 12 12 C 1.54577 * 102.75359 * 338.70095 * 11 10 9 13 13 C 1.47582 * 125.62100 * 179.97438 * 9 7 2 14 14 C 1.52073 * 110.52308 * 276.32255 * 12 11 10 15 15 C 1.53189 * 109.67596 * 177.48528 * 14 12 11 16 16 C 1.53180 * 109.28013 * 59.95692 * 15 14 12 17 17 N 1.46935 * 108.93893 * 304.68842 * 16 15 14 18 18 C 1.34770 * 120.71401 * 234.23427 * 17 16 15 19 19 O 1.21289 * 120.00028 * 179.97438 * 18 17 16 20 20 C 1.50701 * 120.00221 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.47096 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.46985 * 180.02562 * 21 20 18 23 23 F 1.39901 * 109.47095 * 59.99340 * 22 21 20 24 24 F 1.39893 * 109.47133 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.46976 * 299.99857 * 22 21 20 26 26 C 1.47110 * 118.57516 * 54.24679 * 17 16 15 27 27 H 0.97001 * 119.99940 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.87739 * 298.38776 * 10 9 7 29 29 H 1.08996 * 109.87620 * 59.38700 * 10 9 7 30 30 H 1.09003 * 110.73728 * 96.95382 * 11 10 9 31 31 H 1.08996 * 110.73633 * 220.26516 * 11 10 9 32 32 H 1.08999 * 110.37886 * 322.15569 * 13 9 7 33 33 H 1.09002 * 110.37372 * 84.40100 * 13 9 7 34 34 H 1.09006 * 109.43765 * 297.54480 * 14 12 11 35 35 H 1.09002 * 109.43673 * 57.45916 * 14 12 11 36 36 H 1.09000 * 109.50313 * 179.90163 * 15 14 12 37 37 H 1.09001 * 109.50458 * 299.97727 * 15 14 12 38 38 H 1.09000 * 109.55860 * 64.52298 * 16 15 14 39 39 H 1.09001 * 109.56413 * 184.73901 * 16 15 14 40 40 H 1.09001 * 109.47152 * 300.00436 * 20 18 17 41 41 H 1.09002 * 109.46589 * 60.00562 * 20 18 17 42 42 H 1.09001 * 109.47007 * 299.99951 * 21 20 18 43 43 H 1.08989 * 109.47228 * 60.00228 * 21 20 18 44 44 H 1.08996 * 109.57761 * 187.94591 * 26 17 16 45 45 H 1.09003 * 109.57112 * 67.55681 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1382 -2.5322 -0.0005 11 6 -0.4541 -4.0440 -0.0287 12 6 0.8504 -4.6548 -0.5895 13 6 1.9346 -3.7323 0.0005 14 6 0.8584 -4.5921 -2.1089 15 6 2.1846 -5.1442 -2.6410 16 6 2.3448 -6.5988 -2.1884 17 7 2.2264 -6.6588 -0.7251 18 6 3.1926 -7.2301 0.0209 19 8 3.0817 -7.2721 1.2280 20 6 4.4107 -7.8168 -0.6448 21 6 5.3435 -8.3978 0.4198 22 6 6.5805 -8.9928 -0.2560 23 9 7.2505 -7.9915 -0.9671 24 9 7.4337 -9.5235 0.7173 25 9 6.1885 -10.0071 -1.1363 26 6 1.0304 -6.0820 -0.0917 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5555 -2.0831 0.9008 29 1 -0.5575 -2.0495 -0.8832 30 1 -0.6527 -4.4156 0.9766 31 1 -1.2952 -4.2502 -0.6906 32 1 2.8262 -3.7450 -0.6263 33 1 2.1820 -4.0368 1.0175 34 1 0.0341 -5.1879 -2.5009 35 1 0.7423 -3.5568 -2.4298 36 1 2.1866 -5.0995 -3.7300 37 1 3.0097 -4.5482 -2.2508 38 1 1.5653 -7.2103 -2.6429 39 1 3.3235 -6.9700 -2.4925 40 1 4.1049 -8.6074 -1.3301 41 1 4.9327 -7.0369 -1.1993 42 1 5.6493 -7.6075 1.1053 43 1 4.8213 -9.1776 0.9739 44 1 1.1565 -6.0780 0.9910 45 1 0.1549 -6.6746 -0.3572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281086928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:54 Heat of formation + Delta-G solvation = -174.241227 kcal Electronic energy + Delta-G solvation = -30307.927928 eV Core-core repulsion = 25717.487698 eV Total energy + Delta-G solvation = -4590.440230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.37521 -47.87240 -47.84835 -40.52945 -38.58907 -35.91789 -34.09032 -32.99192 -31.91655 -30.29529 -28.71148 -27.47265 -25.65990 -25.22169 -23.74081 -22.65192 -22.08597 -20.21877 -19.47373 -18.84015 -18.53759 -18.06554 -17.95795 -16.90525 -16.48126 -15.98224 -15.80628 -15.05413 -14.76765 -14.73660 -14.60996 -14.29298 -14.19596 -14.01521 -14.00294 -13.89985 -13.72102 -13.43507 -13.20534 -13.04593 -12.74479 -12.46802 -12.06842 -11.97050 -11.86337 -11.73289 -11.65086 -11.13020 -10.90190 -10.87854 -10.77507 -10.65108 -10.16051 -10.14709 -9.94455 -9.79021 -9.63989 -9.61470 -8.57302 -8.54105 -6.79298 -5.69211 -3.01802 2.41764 2.53020 2.91714 3.41099 3.45667 3.46623 3.54014 3.71012 3.78802 4.35083 4.50415 4.54694 4.60796 4.75207 5.00487 5.01900 5.07334 5.15246 5.28141 5.30363 5.39058 5.44895 5.52765 5.55030 5.74328 5.86531 5.87480 5.91633 5.98040 6.09323 6.28686 6.35281 6.43871 6.52121 6.62737 6.71089 6.80795 6.95391 7.35926 7.57760 7.64560 7.84261 8.07901 8.28370 9.24736 9.85141 10.51967 11.42431 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.002983 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.170740 B = 9384.807526 C =10271.112622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.226 4.226 8 H 0.075 0.925 9 N -0.604 5.604 10 C 0.180 3.820 11 C -0.134 4.134 12 C -0.087 4.087 13 C 0.151 3.849 14 C -0.096 4.096 15 C -0.137 4.137 16 C 0.106 3.894 17 N -0.604 5.604 18 C 0.520 3.480 19 O -0.541 6.541 20 C -0.146 4.146 21 C -0.151 4.151 22 C 0.453 3.547 23 F -0.183 7.183 24 F -0.183 7.183 25 F -0.185 7.185 26 C 0.130 3.870 27 H 0.252 0.748 28 H 0.040 0.960 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.015 0.985 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.093 0.907 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.625 -19.816 -5.561 21.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.354 4.354 8 H 0.093 0.907 9 N -0.330 5.330 10 C 0.056 3.944 11 C -0.173 4.173 12 C -0.089 4.089 13 C 0.025 3.975 14 C -0.134 4.134 15 C -0.175 4.175 16 C -0.017 4.017 17 N -0.336 5.336 18 C 0.308 3.692 19 O -0.419 6.419 20 C -0.186 4.186 21 C -0.189 4.189 22 C 0.398 3.602 23 F -0.164 7.164 24 F -0.165 7.165 25 F -0.167 7.167 26 C 0.007 3.993 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.111 0.889 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.535 -19.611 -4.934 21.252 hybrid contribution 0.649 0.892 -0.213 1.124 sum 7.184 -18.719 -5.147 20.700 Atomic orbital electron populations 1.69951 1.04829 1.25024 1.57248 1.24769 0.95687 0.97542 1.02418 0.86228 0.78469 0.83366 0.77876 1.21246 1.21627 1.21225 1.18991 0.90318 0.82512 1.43609 0.90728 1.44500 1.01585 0.99806 1.87137 1.21130 0.84369 0.88012 1.00925 1.22868 0.95196 0.99698 0.99529 1.21448 0.98334 0.93360 0.95725 1.21458 0.93814 0.85736 0.96450 1.21228 0.95779 1.02355 0.94009 1.21990 0.99960 0.94973 1.00584 1.21806 1.02153 0.98142 0.79576 1.48118 1.20867 1.57387 1.07256 1.20150 0.83622 0.78263 0.87207 1.90726 1.78730 1.58435 1.13963 1.21656 0.95293 1.02835 0.98834 1.22620 0.92155 1.04718 0.99432 1.20615 0.86083 0.76313 0.77142 1.93199 1.82693 1.60822 1.79732 1.93195 1.73363 1.87135 1.62785 1.93180 1.90766 1.61997 1.70746 1.21547 0.85579 0.92937 0.99190 0.93787 0.94164 0.93636 0.92345 0.91977 0.94505 0.96688 0.92641 0.90208 0.90911 0.90746 0.91225 0.90109 0.87690 0.87426 0.86260 0.86448 0.88909 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.30 55.49 0.57 -26.42 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.29 10.28 -15.06 -0.15 -6.45 16 8 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -15.24 3.39 -170.32 -0.58 -15.81 16 10 C 0.18 4.30 5.02 -2.95 -0.01 4.28 16 11 C -0.13 -2.40 5.91 -25.13 -0.15 -2.55 16 12 C -0.09 -1.42 0.55 -153.98 -0.08 -1.50 16 13 C 0.15 3.12 5.96 -2.88 -0.02 3.11 16 14 C -0.10 -1.39 4.64 -27.11 -0.13 -1.52 16 15 C -0.14 -1.60 5.91 -26.54 -0.16 -1.75 16 16 C 0.11 0.99 6.32 -3.71 -0.02 0.97 16 17 N -0.60 -7.32 2.87 -173.20 -0.50 -7.82 16 18 C 0.52 6.47 7.70 -10.99 -0.08 6.38 16 19 O -0.54 -8.67 15.41 5.55 0.09 -8.59 16 20 C -0.15 -1.23 3.80 -27.88 -0.11 -1.34 16 21 C -0.15 -1.25 4.55 -26.73 -0.12 -1.38 16 22 C 0.45 3.91 3.16 37.16 0.12 4.02 16 23 F -0.18 -1.75 16.80 2.25 0.04 -1.71 16 24 F -0.18 -1.77 17.32 2.25 0.04 -1.73 16 25 F -0.19 -1.63 16.80 2.25 0.04 -1.59 16 26 C 0.13 1.82 5.12 -4.10 -0.02 1.80 16 27 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 29 H 0.05 1.19 7.37 -51.93 -0.38 0.81 16 30 H 0.06 1.01 8.01 -51.93 -0.42 0.59 16 31 H 0.06 0.99 8.01 -51.93 -0.42 0.57 16 32 H 0.04 0.75 6.10 -51.93 -0.32 0.44 16 33 H 0.02 0.34 7.87 -51.93 -0.41 -0.07 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.42 7.85 -51.93 -0.41 1.02 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.02 6.33 -51.93 -0.33 0.69 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.56 5.95 -51.93 -0.31 0.25 16 40 H 0.10 0.67 7.59 -51.93 -0.39 0.28 16 41 H 0.11 0.82 7.37 -51.93 -0.38 0.44 16 42 H 0.12 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.12 0.93 8.10 -51.94 -0.42 0.51 16 44 H 0.09 1.49 6.84 -51.93 -0.36 1.14 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -31.98 359.88 -7.53 -39.51 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.59 Total: -2.15 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.04 Total: 3.75 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: -0.50 Total: -50.06 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.11 Total: -5.03 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.98 -7.53 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281086928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.734 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds