Wall clock time and date at job start Tue Mar 31 2020 21:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00030 * 2 1 4 4 H 1.48505 * 109.46514 * 239.99631 * 3 2 1 5 5 H 1.48497 * 109.46924 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47286 * 119.99583 * 3 2 1 7 7 C 1.38816 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00115 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99534 * 0.02562 * 7 2 1 10 10 C 1.47082 * 125.62865 * 0.02562 * 9 7 2 11 11 C 1.54468 * 107.42506 * 178.88632 * 10 9 7 12 12 C 1.54577 * 102.75359 * 338.70095 * 11 10 9 13 13 C 1.47582 * 125.62100 * 179.97438 * 9 7 2 14 14 C 1.52073 * 110.52308 * 276.32255 * 12 11 10 15 15 C 1.53189 * 109.67596 * 177.48528 * 14 12 11 16 16 C 1.53180 * 109.28013 * 59.95692 * 15 14 12 17 17 N 1.46935 * 108.93893 * 304.68842 * 16 15 14 18 18 C 1.34770 * 120.71401 * 234.23427 * 17 16 15 19 19 O 1.21289 * 120.00028 * 179.97438 * 18 17 16 20 20 C 1.50701 * 120.00221 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.47096 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.46985 * 180.02562 * 21 20 18 23 23 F 1.39901 * 109.47095 * 59.99340 * 22 21 20 24 24 F 1.39893 * 109.47133 * 179.97438 * 22 21 20 25 25 F 1.39898 * 109.46976 * 299.99857 * 22 21 20 26 26 C 1.47110 * 118.57516 * 54.24679 * 17 16 15 27 27 H 0.97001 * 119.99940 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.87739 * 298.38776 * 10 9 7 29 29 H 1.08996 * 109.87620 * 59.38700 * 10 9 7 30 30 H 1.09003 * 110.73728 * 96.95382 * 11 10 9 31 31 H 1.08996 * 110.73633 * 220.26516 * 11 10 9 32 32 H 1.08999 * 110.37886 * 322.15569 * 13 9 7 33 33 H 1.09002 * 110.37372 * 84.40100 * 13 9 7 34 34 H 1.09006 * 109.43765 * 297.54480 * 14 12 11 35 35 H 1.09002 * 109.43673 * 57.45916 * 14 12 11 36 36 H 1.09000 * 109.50313 * 179.90163 * 15 14 12 37 37 H 1.09001 * 109.50458 * 299.97727 * 15 14 12 38 38 H 1.09000 * 109.55860 * 64.52298 * 16 15 14 39 39 H 1.09001 * 109.56413 * 184.73901 * 16 15 14 40 40 H 1.09001 * 109.47152 * 300.00436 * 20 18 17 41 41 H 1.09002 * 109.46589 * 60.00562 * 20 18 17 42 42 H 1.09001 * 109.47007 * 299.99951 * 21 20 18 43 43 H 1.08989 * 109.47228 * 60.00228 * 21 20 18 44 44 H 1.08996 * 109.57761 * 187.94591 * 26 17 16 45 45 H 1.09003 * 109.57112 * 67.55681 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1382 -2.5322 -0.0005 11 6 -0.4541 -4.0440 -0.0287 12 6 0.8504 -4.6548 -0.5895 13 6 1.9346 -3.7323 0.0005 14 6 0.8584 -4.5921 -2.1089 15 6 2.1846 -5.1442 -2.6410 16 6 2.3448 -6.5988 -2.1884 17 7 2.2264 -6.6588 -0.7251 18 6 3.1926 -7.2301 0.0209 19 8 3.0817 -7.2721 1.2280 20 6 4.4107 -7.8168 -0.6448 21 6 5.3435 -8.3978 0.4198 22 6 6.5805 -8.9928 -0.2560 23 9 7.2505 -7.9915 -0.9671 24 9 7.4337 -9.5235 0.7173 25 9 6.1885 -10.0071 -1.1363 26 6 1.0304 -6.0820 -0.0917 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5555 -2.0831 0.9008 29 1 -0.5575 -2.0495 -0.8832 30 1 -0.6527 -4.4156 0.9766 31 1 -1.2952 -4.2502 -0.6906 32 1 2.8262 -3.7450 -0.6263 33 1 2.1820 -4.0368 1.0175 34 1 0.0341 -5.1879 -2.5009 35 1 0.7423 -3.5568 -2.4298 36 1 2.1866 -5.0995 -3.7300 37 1 3.0097 -4.5482 -2.2508 38 1 1.5653 -7.2103 -2.6429 39 1 3.3235 -6.9700 -2.4925 40 1 4.1049 -8.6074 -1.3301 41 1 4.9327 -7.0369 -1.1993 42 1 5.6493 -7.6075 1.1053 43 1 4.8213 -9.1776 0.9739 44 1 1.1565 -6.0780 0.9910 45 1 0.1549 -6.6746 -0.3572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281086928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:53 Heat of formation + Delta-G solvation = -193.168893 kcal Electronic energy + Delta-G solvation = -30308.748693 eV Core-core repulsion = 25717.487698 eV Total energy + Delta-G solvation = -4591.260995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.07326 -48.58213 -48.54235 -41.61687 -39.87637 -37.27263 -35.00170 -34.55807 -33.07339 -32.00224 -30.28928 -28.43539 -27.37631 -26.26647 -25.23471 -23.45192 -23.23797 -21.99420 -20.51241 -19.53186 -19.47928 -19.12768 -18.85585 -18.67755 -17.40843 -16.96337 -16.79877 -16.63923 -16.31873 -15.81847 -15.47745 -15.44620 -15.04452 -14.99381 -14.87783 -14.74969 -14.70331 -14.59813 -14.44828 -14.17029 -13.90885 -13.73043 -13.45095 -13.26643 -13.16189 -12.79380 -12.73367 -12.70644 -12.37846 -12.24436 -12.13432 -12.07678 -12.05794 -11.69070 -11.57294 -11.30865 -11.14216 -10.77471 -10.69446 -9.55845 -8.89244 -7.85851 -5.20748 1.42999 1.46330 1.52646 1.59346 1.70550 2.07254 2.48038 2.84776 3.02149 3.11820 3.31545 3.54902 3.60538 3.68627 3.86679 3.95741 3.97922 4.00801 4.14292 4.22828 4.34914 4.42383 4.57311 4.60641 4.65443 4.67785 4.76942 4.80716 4.83204 4.86525 4.91951 4.98136 5.06013 5.18164 5.27862 5.42140 5.50234 5.53048 5.57063 5.69034 5.78503 6.19268 6.44822 7.10107 7.15035 7.77530 8.42697 9.24116 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015482 B = 0.002983 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.170740 B = 9384.807526 C =10271.112622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.976 3.024 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.623 5.623 10 C 0.189 3.811 11 C -0.122 4.122 12 C -0.071 4.071 13 C 0.152 3.848 14 C -0.094 4.094 15 C -0.133 4.133 16 C 0.107 3.893 17 N -0.606 5.606 18 C 0.514 3.486 19 O -0.585 6.585 20 C -0.139 4.139 21 C -0.147 4.147 22 C 0.460 3.540 23 F -0.188 7.188 24 F -0.191 7.191 25 F -0.183 7.183 26 C 0.137 3.863 27 H 0.247 0.753 28 H -0.003 1.003 29 H 0.015 0.985 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.038 0.962 33 H -0.006 1.006 34 H 0.086 0.914 35 H 0.038 0.962 36 H 0.099 0.901 37 H 0.047 0.953 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.121 0.879 44 H 0.067 0.933 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.346 -22.137 -7.572 24.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.804 3.196 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.093 0.907 9 N -0.350 5.350 10 C 0.064 3.936 11 C -0.161 4.161 12 C -0.073 4.073 13 C 0.027 3.973 14 C -0.131 4.131 15 C -0.171 4.171 16 C -0.015 4.015 17 N -0.338 5.338 18 C 0.304 3.696 19 O -0.466 6.466 20 C -0.178 4.178 21 C -0.186 4.186 22 C 0.406 3.594 23 F -0.169 7.169 24 F -0.172 7.172 25 F -0.164 7.164 26 C 0.014 3.986 27 H 0.056 0.944 28 H 0.015 0.985 29 H 0.033 0.967 30 H 0.083 0.917 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.012 0.988 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.117 0.883 39 H 0.130 0.870 40 H 0.154 0.846 41 H 0.139 0.861 42 H 0.128 0.872 43 H 0.140 0.860 44 H 0.086 0.914 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.280 -21.963 -6.975 24.166 hybrid contribution 0.444 1.636 0.438 1.751 sum 7.724 -20.327 -6.537 22.706 Atomic orbital electron populations 1.70181 1.06197 1.25270 1.58203 1.25606 0.96602 1.00839 1.02597 0.85190 0.77214 0.78978 0.78190 1.20046 1.21830 1.20711 1.19360 0.90739 0.83997 1.43193 0.90692 1.44800 1.02460 1.00894 1.86799 1.20882 0.83562 0.91842 0.97333 1.22755 0.97198 0.95160 1.00981 1.21353 0.95007 0.93887 0.97050 1.21549 0.95406 0.84746 0.95572 1.21203 0.98911 1.00759 0.92270 1.21960 0.96959 0.96136 1.02046 1.22060 1.05187 0.96704 0.77511 1.48232 1.20122 1.56801 1.08611 1.20828 0.84316 0.77693 0.86781 1.90713 1.79643 1.60151 1.16059 1.21687 0.93343 1.03912 0.98882 1.22567 0.92042 1.04580 0.99401 1.20549 0.85842 0.76143 0.76892 1.93193 1.82851 1.61047 1.79824 1.93183 1.73635 1.87237 1.63145 1.93185 1.90691 1.61912 1.70641 1.21311 0.87799 0.91580 0.97904 0.94411 0.98464 0.96722 0.91683 0.89114 0.94370 0.98821 0.89524 0.94318 0.88291 0.93405 0.88250 0.86953 0.84588 0.86129 0.87239 0.86048 0.91432 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.99 10.30 21.65 0.22 -57.76 16 2 C -0.06 -3.68 5.49 84.86 0.47 -3.22 16 3 Si 0.98 46.61 29.55 68.60 2.03 48.64 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 7 C -0.24 -14.08 10.28 84.03 0.86 -13.22 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.62 -32.84 3.39 -692.76 -2.35 -35.19 16 10 C 0.19 9.45 5.02 86.77 0.44 9.88 16 11 C -0.12 -4.36 5.91 31.63 0.19 -4.17 16 12 C -0.07 -2.26 0.55 -51.84 -0.03 -2.29 16 13 C 0.15 6.45 5.96 86.54 0.52 6.96 16 14 C -0.09 -2.53 4.64 30.35 0.14 -2.39 16 15 C -0.13 -2.69 5.91 30.72 0.18 -2.51 16 16 C 0.11 1.48 6.32 86.36 0.55 2.03 16 17 N -0.61 -12.90 2.87 -820.28 -2.35 -15.26 16 18 C 0.51 11.68 7.70 87.66 0.68 12.35 16 19 O -0.58 -18.45 15.41 -3.06 -0.05 -18.49 16 20 C -0.14 -1.89 3.80 29.85 0.11 -1.78 16 21 C -0.15 -2.17 4.55 30.59 0.14 -2.04 16 22 C 0.46 6.96 3.16 71.98 0.23 7.19 16 23 F -0.19 -3.18 16.80 44.97 0.76 -2.42 16 24 F -0.19 -3.41 17.32 44.97 0.78 -2.63 16 25 F -0.18 -2.68 16.80 44.97 0.76 -1.93 16 26 C 0.14 3.56 5.12 86.01 0.44 4.00 16 27 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.00 -0.17 7.50 -2.39 -0.02 -0.18 16 29 H 0.01 0.81 7.37 -2.39 -0.02 0.79 16 30 H 0.06 2.23 8.01 -2.39 -0.02 2.21 16 31 H 0.09 2.73 8.01 -2.39 -0.02 2.71 16 32 H 0.04 1.59 6.10 -2.39 -0.01 1.58 16 33 H -0.01 -0.28 7.87 -2.39 -0.02 -0.29 16 34 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.04 1.37 7.85 -2.39 -0.02 1.35 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.23 6.33 -2.39 -0.02 1.21 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 0.92 5.95 -2.39 -0.01 0.91 16 40 H 0.14 1.05 7.59 -2.39 -0.02 1.03 16 41 H 0.12 1.39 7.37 -2.39 -0.02 1.37 16 42 H 0.11 1.86 8.10 -2.39 -0.02 1.84 16 43 H 0.12 1.71 8.10 -2.39 -0.02 1.69 16 44 H 0.07 2.14 6.84 -2.39 -0.02 2.12 16 45 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -74.81 359.88 5.70 -69.12 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: 1.00 Total: 5.11 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 4.90 Total: 10.82 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -4.48 Total: -108.21 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.05 Total: -18.49 kcal Atomic # 9 Polarization: -9.27 SS G_CDS: 2.29 Total: -6.98 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -74.81 5.70 -69.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281086928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.052 kcal (2) G-P(sol) polarization free energy of solvation -74.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds