Wall clock time and date at job start Tue Mar 31 2020 21:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48504 * 109.47314 * 240.00329 * 3 2 1 5 5 H 1.48501 * 109.46918 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47340 * 120.00476 * 3 2 1 7 7 C 1.38813 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99706 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99824 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47068 * 324.99719 * 10 9 7 12 12 C 1.52996 * 109.46969 * 85.00383 * 10 9 7 13 13 O 1.42899 * 109.47359 * 64.99852 * 12 10 9 14 14 C 1.53006 * 109.46768 * 204.99932 * 10 9 7 15 15 N 1.46496 * 109.47242 * 55.00188 * 14 10 9 16 16 C 1.34772 * 120.00214 * 179.97438 * 15 14 10 17 17 O 1.21281 * 119.99940 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00069 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47001 * 179.97438 * 18 16 15 20 20 C 1.38289 * 120.00374 * 89.99819 * 19 18 16 21 21 C 1.37967 * 119.95608 * 180.02562 * 20 19 18 22 22 C 1.39144 * 120.21790 * 359.91822 * 21 20 19 23 23 C 1.38375 * 119.69214 * 359.97325 * 22 21 20 24 24 C 1.38095 * 120.00932 * 269.72527 * 19 18 16 25 25 C 1.50774 * 121.40505 * 180.26557 * 23 22 21 26 26 C 1.53069 * 109.67774 * 342.18336 * 25 23 22 27 27 C 1.53405 * 108.29872 * 48.20693 * 26 25 23 28 28 O 1.35843 * 118.50290 * 179.77944 * 22 21 20 29 29 H 0.96997 * 120.00503 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00016 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46998 * 185.00050 * 12 10 9 32 32 H 1.09005 * 109.47141 * 304.99578 * 12 10 9 33 33 H 0.96707 * 113.99884 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.47040 * 294.99844 * 14 10 9 35 35 H 1.09000 * 109.46833 * 174.99945 * 14 10 9 36 36 H 0.97000 * 119.99972 * 359.97438 * 15 14 10 37 37 H 1.09000 * 109.46978 * 60.00374 * 18 16 15 38 38 H 1.09000 * 109.46976 * 299.99619 * 18 16 15 39 39 H 1.08003 * 120.02517 * 0.09766 * 20 19 18 40 40 H 1.08002 * 119.89583 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.84843 * 0.02562 * 24 19 18 42 42 H 1.08996 * 109.43704 * 222.11967 * 25 23 22 43 43 H 1.09003 * 109.43500 * 102.24528 * 25 23 22 44 44 H 1.09003 * 109.69977 * 288.50870 * 26 25 23 45 45 H 1.08996 * 109.73396 * 167.92794 * 26 25 23 46 46 H 1.09000 * 109.68529 * 175.55856 * 27 26 25 47 47 H 1.09000 * 109.71229 * 55.02642 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5900 12 6 2.4220 -4.0356 1.4365 13 8 1.2277 -4.2886 2.1793 14 6 1.1809 -4.7522 -0.6102 15 7 0.7343 -4.3355 -1.9417 16 6 -0.0547 -5.1477 -2.6727 17 8 -0.3946 -6.2237 -2.2282 18 6 -0.5136 -4.7193 -4.0427 19 6 -1.3767 -5.7988 -4.6436 20 6 -2.7438 -5.7870 -4.4355 21 6 -3.5330 -6.7759 -4.9856 22 6 -2.9582 -7.7855 -5.7515 23 6 -1.5903 -7.7933 -5.9599 24 6 -0.8034 -6.7966 -5.4069 25 6 -0.9278 -8.8651 -6.7879 26 6 -1.8689 -10.0643 -6.9272 27 6 -3.2530 -9.5452 -7.3374 28 8 -3.7673 -8.7442 -6.2727 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 3.0426 -4.9317 1.4300 32 1 2.9716 -3.2164 1.9001 33 1 1.3829 -4.5353 3.1014 34 1 0.3134 -4.9201 0.0280 35 1 1.7559 -5.6746 -0.6919 36 1 1.0065 -3.4751 -2.2974 37 1 0.3542 -4.5514 -4.6805 38 1 -1.0887 -3.7970 -3.9613 39 1 -3.1936 -5.0035 -3.8436 40 1 -4.6005 -6.7660 -4.8221 41 1 0.2640 -6.8014 -5.5713 42 1 -0.0060 -9.1822 -6.3004 43 1 -0.6967 -8.4686 -7.7766 44 1 -1.9407 -10.5877 -5.9738 45 1 -1.4898 -10.7429 -7.6912 46 1 -3.9215 -10.3867 -7.5198 47 1 -3.1665 -8.9426 -8.2416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283773251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:30 Heat of formation + Delta-G solvation = -98.335998 kcal Electronic energy + Delta-G solvation = -28224.249852 eV Core-core repulsion = 24178.957860 eV Total energy + Delta-G solvation = -4045.291992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.78881 -39.38482 -37.70074 -36.97396 -34.84621 -34.47985 -33.41876 -32.36594 -31.28653 -30.53803 -28.59825 -27.61391 -25.74478 -24.83791 -23.66250 -23.30714 -22.38744 -20.27695 -20.06120 -19.36642 -17.85524 -17.60723 -16.82320 -16.67416 -16.49505 -16.11390 -15.61194 -15.05467 -14.90316 -14.59121 -14.41619 -14.09179 -14.03700 -13.83014 -13.60181 -13.33205 -13.30795 -13.23227 -12.97964 -12.79350 -12.49661 -12.13663 -11.79078 -11.58554 -11.44944 -11.33130 -11.08900 -10.95661 -10.88030 -10.84490 -10.55995 -10.54294 -10.13622 -9.79504 -9.50085 -9.34149 -8.98529 -8.77360 -8.50890 -8.04923 -7.04649 -5.82318 -3.12696 1.33444 1.39848 3.05947 3.15977 3.38190 3.43359 3.44809 3.52440 3.92797 4.37649 4.44481 4.51760 4.53249 4.73859 4.82487 4.93410 4.93469 5.08225 5.18798 5.25374 5.30386 5.34952 5.42120 5.44204 5.53329 5.56406 5.58263 5.60758 5.63864 5.75754 5.85039 5.91100 6.03684 6.05137 6.06754 6.23983 6.37554 6.40059 6.52001 6.64983 6.76133 6.77763 6.98421 7.37508 7.60716 8.03207 8.21219 8.34736 8.68883 9.46850 10.02399 10.39130 11.39158 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.002277 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.897930 B =12293.998147 C =13038.332522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.248 4.248 8 H 0.069 0.931 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.065 0.935 12 C 0.059 3.941 13 O -0.560 6.560 14 C 0.120 3.880 15 N -0.715 5.715 16 C 0.510 3.490 17 O -0.546 6.546 18 C -0.101 4.101 19 C -0.086 4.086 20 C -0.071 4.071 21 C -0.146 4.146 22 C 0.125 3.875 23 C -0.162 4.162 24 C -0.071 4.071 25 C -0.076 4.076 26 C -0.160 4.160 27 C 0.062 3.938 28 O -0.319 6.319 29 H 0.256 0.744 30 H 0.389 0.611 31 H 0.026 0.974 32 H 0.048 0.952 33 H 0.364 0.636 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.409 0.591 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 -16.990 -13.903 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.205 4.205 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.022 4.022 13 O -0.363 6.363 14 C -0.005 4.005 15 N -0.367 5.367 16 C 0.296 3.704 17 O -0.424 6.424 18 C -0.141 4.141 19 C -0.087 4.087 20 C -0.089 4.089 21 C -0.165 4.165 22 C 0.080 3.920 23 C -0.162 4.162 24 C -0.089 4.089 25 C -0.113 4.113 26 C -0.198 4.198 27 C -0.014 4.014 28 O -0.233 6.233 29 H 0.066 0.934 30 H 0.223 0.777 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.208 0.792 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.245 0.755 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.122 0.878 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.061 -17.493 -14.124 22.578 hybrid contribution 0.931 1.269 0.532 1.662 sum -1.130 -16.224 -13.592 21.195 Atomic orbital electron populations 1.69663 1.05073 1.25856 1.56711 1.24746 0.95457 0.97635 1.02626 0.86299 0.78529 0.83664 0.77786 1.21248 1.21712 1.21370 1.19167 0.90862 0.84079 1.43833 0.91287 1.42363 1.06051 0.99014 1.88008 1.20590 0.95035 0.87077 0.91851 0.91738 1.23037 0.86506 0.97209 0.95476 1.86575 1.32150 1.91881 1.25702 1.21504 0.99394 0.96674 0.82895 1.46001 1.50896 1.21802 1.17953 1.20442 0.78501 0.84657 0.86799 1.90688 1.56557 1.22701 1.72488 1.20630 1.00543 0.98613 0.94312 1.19174 0.93676 0.96906 0.98921 1.20820 0.92928 0.97818 0.97345 1.20514 1.00445 0.93947 1.01589 1.18633 0.88627 0.89019 0.95676 1.19680 0.92438 0.99359 1.04773 1.20678 0.99119 0.92918 0.96171 1.20440 0.98434 0.93094 0.99350 1.22233 0.95845 0.98372 1.03328 1.22923 0.95628 0.94320 0.88490 1.85984 1.41378 1.45745 1.50181 0.93365 0.77659 0.95588 0.93364 0.79183 0.90735 0.92363 0.75494 0.88272 0.87691 0.85305 0.85335 0.86084 0.90076 0.90649 0.90384 0.89895 0.87761 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.99 13.06 55.49 0.72 -26.27 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.45 9.93 -15.06 -0.15 -6.60 16 8 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 9 N -0.71 -16.79 4.51 -53.42 -0.24 -17.04 16 10 C 0.17 3.13 2.84 -67.93 -0.19 2.94 16 11 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 12 C 0.06 1.03 6.85 37.16 0.25 1.28 16 13 O -0.56 -10.11 12.64 -35.23 -0.45 -10.55 16 14 C 0.12 2.15 5.12 -4.04 -0.02 2.13 16 15 N -0.71 -12.04 5.39 -60.30 -0.32 -12.37 16 16 C 0.51 8.53 7.82 -10.99 -0.09 8.44 16 17 O -0.55 -11.04 16.03 5.56 0.09 -10.95 16 18 C -0.10 -1.31 5.83 -29.03 -0.17 -1.48 16 19 C -0.09 -1.17 4.37 -104.65 -0.46 -1.63 16 20 C -0.07 -0.96 9.70 -39.66 -0.38 -1.34 16 21 C -0.15 -1.93 9.94 -39.34 -0.39 -2.32 16 22 C 0.13 1.63 6.47 -39.19 -0.25 1.38 16 23 C -0.16 -1.97 5.75 -104.44 -0.60 -2.57 16 24 C -0.07 -0.90 9.32 -39.53 -0.37 -1.27 16 25 C -0.08 -0.68 5.86 -27.81 -0.16 -0.84 16 26 C -0.16 -1.20 6.19 -26.49 -0.16 -1.37 16 27 C 0.06 0.49 7.03 37.37 0.26 0.75 16 28 O -0.32 -3.81 10.27 -19.25 -0.20 -4.01 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.39 10.21 7.80 -40.82 -0.32 9.89 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.36 4.74 9.12 45.56 0.42 5.16 16 34 H 0.07 1.53 7.39 -51.93 -0.38 1.14 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.41 6.79 8.14 -40.82 -0.33 6.46 16 37 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 39 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 40 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 41 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -33.75 391.58 -8.99 -42.75 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -6.50 Total: 18.86 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -2.98 Total: -2.79 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.16 Total: -55.67 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.55 Total: -25.51 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.75 -8.99 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283773251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.589 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds