Wall clock time and date at job start Tue Mar 31 2020 21:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48504 * 109.47314 * 240.00329 * 3 2 1 5 5 H 1.48501 * 109.46918 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47340 * 120.00476 * 3 2 1 7 7 C 1.38813 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99706 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00287 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99824 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.47068 * 324.99719 * 10 9 7 12 12 C 1.52996 * 109.46969 * 85.00383 * 10 9 7 13 13 O 1.42899 * 109.47359 * 64.99852 * 12 10 9 14 14 C 1.53006 * 109.46768 * 204.99932 * 10 9 7 15 15 N 1.46496 * 109.47242 * 55.00188 * 14 10 9 16 16 C 1.34772 * 120.00214 * 179.97438 * 15 14 10 17 17 O 1.21281 * 119.99940 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00069 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.47001 * 179.97438 * 18 16 15 20 20 C 1.38289 * 120.00374 * 89.99819 * 19 18 16 21 21 C 1.37967 * 119.95608 * 180.02562 * 20 19 18 22 22 C 1.39144 * 120.21790 * 359.91822 * 21 20 19 23 23 C 1.38375 * 119.69214 * 359.97325 * 22 21 20 24 24 C 1.38095 * 120.00932 * 269.72527 * 19 18 16 25 25 C 1.50774 * 121.40505 * 180.26557 * 23 22 21 26 26 C 1.53069 * 109.67774 * 342.18336 * 25 23 22 27 27 C 1.53405 * 108.29872 * 48.20693 * 26 25 23 28 28 O 1.35843 * 118.50290 * 179.77944 * 22 21 20 29 29 H 0.96997 * 120.00503 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00016 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46998 * 185.00050 * 12 10 9 32 32 H 1.09005 * 109.47141 * 304.99578 * 12 10 9 33 33 H 0.96707 * 113.99884 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.47040 * 294.99844 * 14 10 9 35 35 H 1.09000 * 109.46833 * 174.99945 * 14 10 9 36 36 H 0.97000 * 119.99972 * 359.97438 * 15 14 10 37 37 H 1.09000 * 109.46978 * 60.00374 * 18 16 15 38 38 H 1.09000 * 109.46976 * 299.99619 * 18 16 15 39 39 H 1.08003 * 120.02517 * 0.09766 * 20 19 18 40 40 H 1.08002 * 119.89583 * 179.97438 * 21 20 19 41 41 H 1.08001 * 119.84843 * 0.02562 * 24 19 18 42 42 H 1.08996 * 109.43704 * 222.11967 * 25 23 22 43 43 H 1.09003 * 109.43500 * 102.24528 * 25 23 22 44 44 H 1.09003 * 109.69977 * 288.50870 * 26 25 23 45 45 H 1.08996 * 109.73396 * 167.92794 * 26 25 23 46 46 H 1.09000 * 109.68529 * 175.55856 * 27 26 25 47 47 H 1.09000 * 109.71229 * 55.02642 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5900 12 6 2.4220 -4.0356 1.4365 13 8 1.2277 -4.2886 2.1793 14 6 1.1809 -4.7522 -0.6102 15 7 0.7343 -4.3355 -1.9417 16 6 -0.0547 -5.1477 -2.6727 17 8 -0.3946 -6.2237 -2.2282 18 6 -0.5136 -4.7193 -4.0427 19 6 -1.3767 -5.7988 -4.6436 20 6 -2.7438 -5.7870 -4.4355 21 6 -3.5330 -6.7759 -4.9856 22 6 -2.9582 -7.7855 -5.7515 23 6 -1.5903 -7.7933 -5.9599 24 6 -0.8034 -6.7966 -5.4069 25 6 -0.9278 -8.8651 -6.7879 26 6 -1.8689 -10.0643 -6.9272 27 6 -3.2530 -9.5452 -7.3374 28 8 -3.7673 -8.7442 -6.2727 29 1 -0.4851 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 3.0426 -4.9317 1.4300 32 1 2.9716 -3.2164 1.9001 33 1 1.3829 -4.5353 3.1014 34 1 0.3134 -4.9201 0.0280 35 1 1.7559 -5.6746 -0.6919 36 1 1.0065 -3.4751 -2.2974 37 1 0.3542 -4.5514 -4.6805 38 1 -1.0887 -3.7970 -3.9613 39 1 -3.1936 -5.0035 -3.8436 40 1 -4.6005 -6.7660 -4.8221 41 1 0.2640 -6.8014 -5.5713 42 1 -0.0060 -9.1822 -6.3004 43 1 -0.6967 -8.4686 -7.7766 44 1 -1.9407 -10.5877 -5.9738 45 1 -1.4898 -10.7429 -7.6912 46 1 -3.9215 -10.3867 -7.5198 47 1 -3.1665 -8.9426 -8.2416 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283773251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:29 Heat of formation + Delta-G solvation = -123.231881 kcal Electronic energy + Delta-G solvation = -28225.329418 eV Core-core repulsion = 24178.957860 eV Total energy + Delta-G solvation = -4046.371558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.66947 -40.67714 -38.83618 -38.29560 -36.35984 -35.22910 -35.11993 -33.50518 -32.91472 -31.39308 -30.20987 -28.74565 -26.67039 -26.06134 -25.53198 -24.17104 -23.35889 -21.61120 -21.40874 -20.34412 -19.39319 -18.72562 -18.15961 -17.91469 -17.68032 -17.35471 -16.67184 -16.39214 -16.25593 -15.76206 -15.39098 -15.36621 -15.28243 -14.97286 -14.79541 -14.70075 -14.48696 -14.35504 -14.14882 -13.99666 -13.67786 -13.32044 -13.07014 -12.87756 -12.69660 -12.62095 -12.43936 -12.26928 -12.24938 -11.89003 -11.84403 -11.71274 -11.68221 -11.33605 -11.01770 -10.80204 -10.71362 -9.94320 -9.71656 -9.01045 -8.97906 -7.88048 -5.17257 0.37277 0.41260 1.51674 1.53227 1.59287 1.73709 2.31784 2.40137 2.59478 2.84222 3.44146 3.62318 3.65751 3.72269 3.81453 3.86636 3.92375 3.99515 4.03265 4.13559 4.23967 4.31199 4.43651 4.46548 4.48488 4.57668 4.61915 4.63955 4.65206 4.68391 4.74501 4.90671 4.93228 5.01090 5.05555 5.11014 5.18224 5.25337 5.28732 5.46009 5.54729 5.59770 5.66036 5.84567 6.30479 6.51774 6.68325 7.06394 7.34939 7.38777 8.11169 8.36853 9.34497 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.002277 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.897930 B =12293.998147 C =13038.332522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.303 1.303 6 H -0.284 1.284 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.721 5.721 10 C 0.162 3.838 11 H 0.081 0.919 12 C 0.063 3.937 13 O -0.584 6.584 14 C 0.131 3.869 15 N -0.713 5.713 16 C 0.510 3.490 17 O -0.584 6.584 18 C -0.092 4.092 19 C -0.103 4.103 20 C -0.088 4.088 21 C -0.163 4.163 22 C 0.114 3.886 23 C -0.168 4.168 24 C -0.079 4.079 25 C -0.078 4.078 26 C -0.156 4.156 27 C 0.051 3.949 28 O -0.336 6.336 29 H 0.248 0.752 30 H 0.372 0.628 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.385 0.615 34 H 0.045 0.955 35 H 0.074 0.926 36 H 0.411 0.589 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.063 0.937 45 H 0.114 0.886 46 H 0.128 0.872 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 -18.140 -15.326 23.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.200 1.200 5 H -0.230 1.230 6 H -0.210 1.210 7 C -0.368 4.368 8 H 0.099 0.901 9 N -0.361 5.361 10 C 0.053 3.947 11 H 0.098 0.902 12 C -0.018 4.018 13 O -0.391 6.391 14 C 0.006 3.994 15 N -0.364 5.364 16 C 0.297 3.703 17 O -0.465 6.465 18 C -0.132 4.132 19 C -0.103 4.103 20 C -0.106 4.106 21 C -0.181 4.181 22 C 0.069 3.931 23 C -0.169 4.169 24 C -0.097 4.097 25 C -0.115 4.115 26 C -0.194 4.194 27 C -0.023 4.023 28 O -0.251 6.251 29 H 0.057 0.943 30 H 0.204 0.796 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.233 0.767 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.248 0.752 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.132 0.868 46 H 0.146 0.854 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.095 -18.678 -15.544 24.300 hybrid contribution 0.342 1.466 0.978 1.795 sum 0.247 -17.212 -14.566 22.550 Atomic orbital electron populations 1.69831 1.06623 1.25837 1.59371 1.25481 0.96139 1.00809 1.03960 0.85289 0.77095 0.79653 0.78096 1.19996 1.22989 1.21006 1.19570 0.91461 0.84821 1.40957 0.90098 1.42465 1.05351 1.00158 1.88162 1.20842 0.95150 0.85359 0.93391 0.90152 1.22902 0.86511 0.98524 0.93838 1.86530 1.32941 1.92052 1.27581 1.21307 0.98169 0.96943 0.82942 1.46002 1.50957 1.21883 1.17561 1.21066 0.77501 0.83890 0.87817 1.90667 1.57820 1.24378 1.73588 1.20633 1.01644 0.98614 0.92289 1.19332 0.93734 0.97647 0.99621 1.20968 0.93430 0.98300 0.97912 1.20713 1.00961 0.94387 1.02056 1.18818 0.89328 0.89223 0.95764 1.20093 0.92243 0.99946 1.04595 1.20958 1.00092 0.92733 0.95925 1.20557 0.98574 0.92683 0.99675 1.22238 0.95321 0.98161 1.03637 1.23282 0.96551 0.94721 0.87727 1.85957 1.42016 1.45797 1.51306 0.94293 0.79591 0.91759 0.94521 0.76735 0.93641 0.90822 0.75229 0.85357 0.86889 0.85193 0.84720 0.84403 0.89542 0.88791 0.91781 0.86799 0.85425 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.38 13.06 21.65 0.28 -57.09 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.97 44.16 29.55 68.60 2.03 46.19 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.24 -12.08 9.93 84.03 0.83 -11.25 16 8 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.72 -33.78 4.51 -322.93 -1.46 -35.23 16 10 C 0.16 5.89 2.84 44.99 0.13 6.02 16 11 H 0.08 2.69 8.08 -2.39 -0.02 2.67 16 12 C 0.06 2.07 6.85 71.98 0.49 2.56 16 13 O -0.58 -20.53 12.64 -148.98 -1.88 -22.41 16 14 C 0.13 4.62 5.12 86.38 0.44 5.06 16 15 N -0.71 -23.64 5.39 -463.07 -2.49 -26.14 16 16 C 0.51 16.89 7.82 87.66 0.69 17.57 16 17 O -0.58 -23.76 16.03 -3.03 -0.05 -23.81 16 18 C -0.09 -2.32 5.83 29.10 0.17 -2.15 16 19 C -0.10 -2.77 4.37 -19.88 -0.09 -2.86 16 20 C -0.09 -2.45 9.70 22.22 0.22 -2.23 16 21 C -0.16 -4.41 9.94 22.42 0.22 -4.19 16 22 C 0.11 2.96 6.47 22.52 0.15 3.10 16 23 C -0.17 -3.93 5.75 -19.74 -0.11 -4.04 16 24 C -0.08 -1.93 9.32 22.30 0.21 -1.73 16 25 C -0.08 -1.22 5.86 29.89 0.18 -1.04 16 26 C -0.16 -1.99 6.19 30.75 0.19 -1.80 16 27 C 0.05 0.72 7.03 72.12 0.51 1.23 16 28 O -0.34 -7.85 10.27 -91.78 -0.94 -8.79 16 29 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.37 19.86 7.80 -92.71 -0.72 19.14 16 31 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.38 9.52 9.12 -74.05 -0.68 8.84 16 34 H 0.05 1.88 7.39 -2.39 -0.02 1.86 16 35 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.41 13.37 8.14 -92.71 -0.75 12.62 16 37 H 0.13 2.43 8.08 -2.39 -0.02 2.41 16 38 H 0.11 2.66 8.09 -2.39 -0.02 2.64 16 39 H 0.13 3.40 8.06 -2.91 -0.02 3.37 16 40 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -73.65 391.58 -0.98 -74.63 By element: Atomic # 1 Polarization: 52.99 SS G_CDS: -1.15 Total: 51.84 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 4.68 Total: 0.83 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -3.67 Total: -118.46 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -2.87 Total: -55.02 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -73.65 -0.98 -74.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283773251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.607 kcal (2) G-P(sol) polarization free energy of solvation -73.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds