Wall clock time and date at job start Tue Mar 31 2020 23:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47378 * 55.00032 * 11 10 9 13 13 N 1.46502 * 109.47147 * 294.99987 * 11 10 9 14 14 C 1.34781 * 119.99887 * 154.99570 * 13 11 10 15 15 O 1.21277 * 120.00260 * 0.02562 * 14 13 11 16 16 C 1.50697 * 119.99733 * 180.02562 * 14 13 11 17 17 C 1.53003 * 109.47184 * 180.02562 * 16 14 13 18 18 N 1.46502 * 109.47338 * 179.97438 * 17 16 14 19 19 C 1.34771 * 119.99784 * 180.02562 * 18 17 16 20 20 O 1.21283 * 120.00151 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99887 * 180.02562 * 19 18 17 22 22 O 1.42901 * 109.47148 * 180.02562 * 21 19 18 23 23 C 1.50698 * 109.47164 * 175.00033 * 11 10 9 24 24 C 1.38241 * 119.99949 * 79.72769 * 23 11 10 25 25 C 1.38231 * 119.99869 * 179.80863 * 24 23 11 26 26 C 1.38238 * 120.00136 * 0.39613 * 25 24 23 27 27 C 1.38233 * 120.00010 * 359.85627 * 26 25 24 28 28 C 1.38233 * 119.99753 * 359.95488 * 27 26 25 29 29 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 31 31 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 32 32 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 33 33 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 34 34 H 0.96991 * 120.00060 * 335.00092 * 13 11 10 35 35 H 1.09007 * 109.47353 * 300.00420 * 16 14 13 36 36 H 1.09004 * 109.47226 * 60.00245 * 16 14 13 37 37 H 1.08993 * 109.47321 * 300.00288 * 17 16 14 38 38 H 1.09004 * 109.47071 * 59.99866 * 17 16 14 39 39 H 0.96996 * 119.99553 * 0.02562 * 18 17 16 40 40 H 1.09000 * 109.46535 * 299.99535 * 21 19 18 41 41 H 1.08994 * 109.47515 * 59.99177 * 21 19 18 42 42 H 0.96700 * 113.99564 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.00120 * 359.97438 * 24 23 11 44 44 H 1.08001 * 120.00028 * 180.23180 * 25 24 23 45 45 H 1.08001 * 120.00168 * 179.83155 * 26 25 24 46 46 H 1.07993 * 120.00215 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.00000 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 1 0.7845 -5.0083 -0.8309 13 7 0.7359 -5.1163 1.2631 14 6 -0.3656 -5.8912 1.3167 15 8 -0.7403 -6.4818 0.3260 16 6 -1.1316 -6.0236 2.6077 17 6 -2.3284 -6.9533 2.3976 18 7 -3.0728 -7.0826 3.6528 19 6 -4.1735 -7.8583 3.7066 20 8 -4.5482 -8.4490 2.7158 21 6 -4.9396 -7.9908 4.9977 22 8 -6.0566 -8.8602 4.8017 23 6 2.4543 -6.1300 -0.1184 24 6 3.1570 -6.5650 0.9898 25 6 4.0475 -7.6159 0.8748 26 6 4.2415 -8.2266 -0.3501 27 6 3.5427 -7.7883 -1.4593 28 6 2.6493 -6.7399 -1.3435 29 1 -0.4850 0.8401 0.0004 30 1 0.6281 -2.5552 0.8979 31 1 0.6206 -2.5586 -0.8820 32 1 2.8678 -3.6059 -0.8902 33 1 2.8760 -3.6028 0.8897 34 1 1.0357 -4.6442 2.0556 35 1 -0.4796 -6.4392 3.3761 36 1 -1.4848 -5.0417 2.9230 37 1 -2.9805 -6.5382 1.6292 38 1 -1.9749 -7.9351 2.0825 39 1 -2.7733 -6.6098 4.4450 40 1 -4.2872 -8.4056 5.7661 41 1 -5.2934 -7.0092 5.3126 42 1 -6.5963 -8.9915 5.5932 43 1 3.0082 -6.0854 1.9460 44 1 4.5937 -7.9582 1.7414 45 1 4.9393 -9.0460 -0.4405 46 1 3.6946 -8.2651 -2.4163 47 1 2.1036 -6.3971 -2.2102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298538651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:55 Heat of formation + Delta-G solvation = -113.890187 kcal Electronic energy + Delta-G solvation = -27865.463132 eV Core-core repulsion = 23819.496659 eV Total energy + Delta-G solvation = -4045.966472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 20.95 seconds Orbital eigenvalues (eV) -40.16885 -39.75335 -38.70050 -36.81196 -35.88084 -35.13023 -33.23532 -32.01569 -30.96399 -30.68163 -30.37835 -28.10568 -26.53414 -24.07527 -23.35139 -22.44312 -21.19311 -20.96778 -20.19501 -19.97849 -18.21620 -17.11307 -17.05801 -16.88135 -16.35671 -16.30370 -15.74279 -15.56732 -15.46827 -15.05781 -14.51840 -14.30829 -14.14391 -14.11514 -13.43649 -13.35679 -13.23139 -13.05345 -12.80087 -12.68980 -12.56348 -12.15021 -12.00874 -11.77758 -11.57574 -11.15895 -11.02296 -10.97293 -10.69051 -10.62836 -10.57176 -10.08784 -10.00560 -9.65021 -9.59135 -9.29157 -9.20031 -8.81735 -8.74521 -8.46534 -8.41898 -6.07097 -4.10158 1.50213 1.55250 2.40591 2.59311 2.83300 3.25523 3.33966 3.37362 3.46341 3.97130 4.16062 4.39652 4.43511 4.64637 4.70977 4.79655 4.90666 4.95129 5.01817 5.03047 5.11530 5.25745 5.28879 5.33064 5.59048 5.63404 5.75586 5.76361 5.85351 5.89083 6.09621 6.16113 6.16571 6.31653 6.51989 6.60045 6.63342 6.70540 6.91812 6.93407 7.06239 7.15010 7.27488 7.58857 7.69543 7.74704 7.91949 8.01062 8.32996 8.44374 8.97179 9.54595 11.03698 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007151 B = 0.003005 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3914.375414 B = 9314.995462 C =12613.108935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.113 4.113 11 C 0.182 3.818 12 H 0.094 0.906 13 N -0.710 5.710 14 C 0.519 3.481 15 O -0.538 6.538 16 C -0.154 4.154 17 C 0.137 3.863 18 N -0.731 5.731 19 C 0.507 3.493 20 O -0.516 6.516 21 C 0.061 3.939 22 O -0.548 6.548 23 C -0.079 4.079 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.130 4.130 27 C -0.121 4.121 28 C -0.106 4.106 29 H 0.260 0.740 30 H 0.018 0.982 31 H 0.016 0.984 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.402 0.598 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.400 0.600 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.386 0.614 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 -15.483 12.573 19.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.150 4.150 11 C 0.077 3.923 12 H 0.112 0.888 13 N -0.360 5.360 14 C 0.304 3.696 15 O -0.415 6.415 16 C -0.195 4.195 17 C 0.013 3.987 18 N -0.386 5.386 19 C 0.292 3.708 20 O -0.390 6.390 21 C -0.021 4.021 22 O -0.353 6.353 23 C -0.080 4.080 24 C -0.127 4.127 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.139 4.139 28 C -0.124 4.124 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.233 0.767 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.732 -16.248 10.500 19.359 hybrid contribution 0.648 1.610 1.435 2.252 sum -0.083 -14.638 11.934 18.887 Atomic orbital electron populations 1.69975 1.06020 1.26538 1.50658 1.25018 0.94822 0.99246 0.95274 0.86564 0.80127 0.83864 0.77614 1.19751 1.21000 1.21048 1.21259 0.93046 0.90976 1.50781 0.92627 1.19098 0.93709 0.90919 0.97538 1.21979 0.99132 0.92206 1.01731 1.20123 0.91772 0.93132 0.87235 0.88785 1.45966 1.27491 1.48620 1.13951 1.20179 0.80671 0.78926 0.89804 1.90729 1.67758 1.46111 1.36920 1.21805 0.97666 1.02546 0.97461 1.21046 0.91968 1.00293 0.85384 1.45869 1.28417 1.50069 1.14215 1.20339 0.80794 0.79339 0.90333 1.90770 1.66791 1.44718 1.36678 1.21836 0.89647 0.95490 0.95096 1.86603 1.40846 1.68163 1.39698 1.20402 0.97124 0.96877 0.93618 1.20896 0.96399 0.97012 0.98344 1.21067 0.98881 0.96844 0.97457 1.21063 1.00265 1.00318 0.93174 1.21089 0.96997 0.97285 0.98518 1.21049 0.98186 0.95828 0.97384 0.93025 0.96337 0.96526 0.91483 0.92552 0.76356 0.88399 0.87812 0.90221 0.90482 0.76594 0.90523 0.90386 0.76703 0.86485 0.86542 0.86607 0.86343 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.00 9.11 -34.44 -0.31 -14.32 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.58 4.86 -27.88 -0.14 0.45 16 10 C -0.11 -2.10 4.67 -26.73 -0.12 -2.22 16 11 C 0.18 3.00 2.17 -69.08 -0.15 2.85 16 12 H 0.09 1.77 7.44 -51.93 -0.39 1.38 16 13 N -0.71 -10.16 3.78 -54.94 -0.21 -10.37 16 14 C 0.52 7.61 7.79 -10.99 -0.09 7.53 16 15 O -0.54 -10.12 15.64 5.56 0.09 -10.03 16 16 C -0.15 -1.53 5.81 -27.88 -0.16 -1.69 16 17 C 0.14 1.62 4.96 -4.04 -0.02 1.60 16 18 N -0.73 -6.57 5.56 -60.29 -0.33 -6.90 16 19 C 0.51 5.89 7.91 -10.99 -0.09 5.81 16 20 O -0.52 -9.00 16.50 -14.35 -0.24 -9.24 16 21 C 0.06 0.42 7.53 36.01 0.27 0.69 16 22 O -0.55 -4.99 13.19 -55.14 -0.73 -5.72 16 23 C -0.08 -1.20 4.91 -104.62 -0.51 -1.71 16 24 C -0.11 -1.45 9.32 -39.58 -0.37 -1.82 16 25 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 26 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 27 C -0.12 -1.55 10.05 -39.58 -0.40 -1.94 16 28 C -0.11 -1.56 9.67 -39.58 -0.38 -1.94 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.02 0.45 7.75 -51.93 -0.40 0.05 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 4.89 8.60 -40.82 -0.35 4.54 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 38 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 39 H 0.40 1.98 8.47 -40.82 -0.35 1.63 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.39 1.17 9.12 45.56 0.42 1.58 16 43 H 0.12 1.38 7.73 -52.49 -0.41 0.98 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.12 1.72 8.04 -52.48 -0.42 1.30 16 LS Contribution 403.69 15.07 6.08 6.08 Total: -1.00 -38.57 403.69 -9.49 -48.06 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.51 Total: 6.44 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.36 Total: -9.08 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.19 Total: -42.46 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.88 Total: -24.99 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.57 -9.49 -48.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298538651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.831 kcal (2) G-P(sol) polarization free energy of solvation -38.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.95 seconds