Wall clock time and date at job start Tue Mar 31 2020 23:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48490 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47239 * 300.00541 * 3 2 1 6 6 H 1.48504 * 109.46636 * 60.00100 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 C 1.53001 * 109.46995 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47367 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47378 * 55.00032 * 11 10 9 13 13 N 1.46502 * 109.47147 * 294.99987 * 11 10 9 14 14 C 1.34781 * 119.99887 * 154.99570 * 13 11 10 15 15 O 1.21277 * 120.00260 * 0.02562 * 14 13 11 16 16 C 1.50697 * 119.99733 * 180.02562 * 14 13 11 17 17 C 1.53003 * 109.47184 * 180.02562 * 16 14 13 18 18 N 1.46502 * 109.47338 * 179.97438 * 17 16 14 19 19 C 1.34771 * 119.99784 * 180.02562 * 18 17 16 20 20 O 1.21283 * 120.00151 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99887 * 180.02562 * 19 18 17 22 22 O 1.42901 * 109.47148 * 180.02562 * 21 19 18 23 23 C 1.50698 * 109.47164 * 175.00033 * 11 10 9 24 24 C 1.38241 * 119.99949 * 79.72769 * 23 11 10 25 25 C 1.38231 * 119.99869 * 179.80863 * 24 23 11 26 26 C 1.38238 * 120.00136 * 0.39613 * 25 24 23 27 27 C 1.38233 * 120.00010 * 359.85627 * 26 25 24 28 28 C 1.38233 * 119.99753 * 359.95488 * 27 26 25 29 29 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 31 31 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 32 32 H 1.08998 * 109.47065 * 300.00574 * 10 9 7 33 33 H 1.09006 * 109.46890 * 59.99833 * 10 9 7 34 34 H 0.96991 * 120.00060 * 335.00092 * 13 11 10 35 35 H 1.09007 * 109.47353 * 300.00420 * 16 14 13 36 36 H 1.09004 * 109.47226 * 60.00245 * 16 14 13 37 37 H 1.08993 * 109.47321 * 300.00288 * 17 16 14 38 38 H 1.09004 * 109.47071 * 59.99866 * 17 16 14 39 39 H 0.96996 * 119.99553 * 0.02562 * 18 17 16 40 40 H 1.09000 * 109.46535 * 299.99535 * 21 19 18 41 41 H 1.08994 * 109.47515 * 59.99177 * 21 19 18 42 42 H 0.96700 * 113.99564 * 180.02562 * 22 21 19 43 43 H 1.07998 * 120.00120 * 359.97438 * 24 23 11 44 44 H 1.08001 * 120.00028 * 180.23180 * 25 24 23 45 45 H 1.08001 * 120.00168 * 179.83155 * 26 25 24 46 46 H 1.07993 * 120.00215 * 179.97438 * 27 26 25 47 47 H 1.08003 * 120.00000 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 6 2.2452 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0079 12 1 0.7845 -5.0083 -0.8309 13 7 0.7359 -5.1163 1.2631 14 6 -0.3656 -5.8912 1.3167 15 8 -0.7403 -6.4818 0.3260 16 6 -1.1316 -6.0236 2.6077 17 6 -2.3284 -6.9533 2.3976 18 7 -3.0728 -7.0826 3.6528 19 6 -4.1735 -7.8583 3.7066 20 8 -4.5482 -8.4490 2.7158 21 6 -4.9396 -7.9908 4.9977 22 8 -6.0566 -8.8602 4.8017 23 6 2.4543 -6.1300 -0.1184 24 6 3.1570 -6.5650 0.9898 25 6 4.0475 -7.6159 0.8748 26 6 4.2415 -8.2266 -0.3501 27 6 3.5427 -7.7883 -1.4593 28 6 2.6493 -6.7399 -1.3435 29 1 -0.4850 0.8401 0.0004 30 1 0.6281 -2.5552 0.8979 31 1 0.6206 -2.5586 -0.8820 32 1 2.8678 -3.6059 -0.8902 33 1 2.8760 -3.6028 0.8897 34 1 1.0357 -4.6442 2.0556 35 1 -0.4796 -6.4392 3.3761 36 1 -1.4848 -5.0417 2.9230 37 1 -2.9805 -6.5382 1.6292 38 1 -1.9749 -7.9351 2.0825 39 1 -2.7733 -6.6098 4.4450 40 1 -4.2872 -8.4056 5.7661 41 1 -5.2934 -7.0092 5.3126 42 1 -6.5963 -8.9915 5.5932 43 1 3.0082 -6.0854 1.9460 44 1 4.5937 -7.9582 1.7414 45 1 4.9393 -9.0460 -0.4405 46 1 3.6946 -8.2651 -2.4163 47 1 2.1036 -6.3971 -2.2102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298538651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:46 Heat of formation + Delta-G solvation = -143.460570 kcal Electronic energy + Delta-G solvation = -27866.745400 eV Core-core repulsion = 23819.496659 eV Total energy + Delta-G solvation = -4047.248740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.30137 -40.72291 -39.78354 -37.48013 -37.18367 -36.18662 -35.13535 -33.30245 -32.12167 -31.81250 -31.62740 -28.89790 -28.06656 -25.55640 -24.48588 -23.47994 -22.61499 -21.93525 -21.49738 -21.18486 -18.89812 -18.55360 -18.12452 -17.98586 -17.62595 -17.20969 -16.91665 -16.59268 -16.48314 -16.39477 -16.03086 -15.41848 -15.09774 -15.02088 -14.84372 -14.57812 -14.39661 -14.22728 -14.15039 -13.85606 -13.70259 -13.38003 -13.35884 -12.98697 -12.86624 -12.53716 -12.49785 -12.42474 -12.12964 -11.91361 -11.75964 -11.43313 -11.18735 -11.13036 -11.06802 -10.83005 -10.55036 -10.23312 -10.07193 -9.77317 -9.56805 -8.18467 -6.29102 0.46562 0.54338 1.40076 1.42223 1.54019 1.54365 1.66436 1.78134 2.41135 2.41952 2.93970 3.15303 3.55271 3.73811 3.80855 3.85957 3.97261 4.01837 4.04888 4.17562 4.26669 4.31358 4.31540 4.36797 4.41915 4.50595 4.66649 4.67280 4.79524 4.82087 4.90858 4.99546 5.10401 5.18230 5.20307 5.30592 5.43651 5.52790 5.60503 5.63880 5.68969 5.83231 5.86274 6.15600 6.25066 6.46997 6.60419 6.88383 6.91583 7.22404 7.30420 7.40337 8.92739 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007151 B = 0.003005 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3914.375414 B = 9314.995462 C =12613.108935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.032 3.968 10 C -0.094 4.094 11 C 0.193 3.807 12 H 0.057 0.943 13 N -0.703 5.703 14 C 0.511 3.489 15 O -0.588 6.588 16 C -0.136 4.136 17 C 0.142 3.858 18 N -0.709 5.709 19 C 0.495 3.505 20 O -0.588 6.588 21 C 0.067 3.933 22 O -0.586 6.586 23 C -0.099 4.099 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.133 4.133 29 H 0.262 0.738 30 H 0.010 0.990 31 H -0.024 1.024 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.415 0.585 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.042 0.958 38 H 0.053 0.947 39 H 0.425 0.575 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.409 0.591 43 H 0.134 0.866 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.138 0.862 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.992 -15.616 15.998 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.132 4.132 11 C 0.088 3.912 12 H 0.075 0.925 13 N -0.354 5.354 14 C 0.298 3.702 15 O -0.469 6.469 16 C -0.176 4.176 17 C 0.018 3.982 18 N -0.364 5.364 19 C 0.282 3.718 20 O -0.467 6.467 21 C -0.013 4.013 22 O -0.396 6.396 23 C -0.100 4.100 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.151 4.151 29 H 0.071 0.929 30 H 0.028 0.972 31 H -0.006 1.006 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.252 0.748 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.263 0.737 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.261 0.739 43 H 0.152 0.848 44 H 0.166 0.834 45 H 0.165 0.835 46 H 0.156 0.844 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.556 -16.345 14.019 21.590 hybrid contribution -0.049 1.610 0.344 1.647 sum 1.507 -14.735 14.363 20.632 Atomic orbital electron populations 1.70107 1.07710 1.27527 1.51807 1.25912 0.95649 1.03119 0.94909 0.85473 0.79207 0.79197 0.77612 1.18550 1.21103 1.20190 1.21696 0.93536 0.92197 1.50178 0.92082 1.18951 0.94026 0.92440 0.95115 1.21705 0.97928 0.91368 1.02208 1.19693 0.91352 0.92972 0.87197 0.92483 1.45886 1.27377 1.48565 1.13582 1.21038 0.80409 0.77826 0.90911 1.90714 1.68891 1.48095 1.39167 1.21748 0.96757 1.03470 0.95598 1.20734 0.92263 0.99235 0.86016 1.45635 1.27419 1.49377 1.14003 1.21464 0.80900 0.78084 0.91350 1.90738 1.68733 1.47728 1.39518 1.21987 0.89464 0.97337 0.92540 1.86539 1.41997 1.68871 1.42166 1.20268 0.97851 0.97120 0.94746 1.21126 0.96327 0.97548 0.98225 1.21471 0.98157 0.95857 0.98663 1.21488 0.99906 1.00594 0.92644 1.21368 0.96426 0.96590 1.00124 1.21182 0.99435 0.97296 0.97216 0.92937 0.97184 1.00567 0.92222 0.90675 0.74801 0.83948 0.85553 0.93913 0.92876 0.73669 0.86520 0.86956 0.73915 0.84797 0.83387 0.83533 0.84426 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.96 42.91 29.54 68.60 2.03 44.93 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.54 -29.12 9.11 25.60 0.23 -28.89 16 8 H 0.06 3.17 7.74 -2.92 -0.02 3.15 16 9 C 0.03 1.57 4.86 29.85 0.15 1.72 16 10 C -0.09 -3.59 4.67 30.59 0.14 -3.45 16 11 C 0.19 6.66 2.17 44.24 0.10 6.76 16 12 H 0.06 2.37 7.44 -2.39 -0.02 2.35 16 13 N -0.70 -20.22 3.78 -446.11 -1.69 -21.91 16 14 C 0.51 15.31 7.79 87.66 0.68 15.99 16 15 O -0.59 -23.70 15.64 -3.02 -0.05 -23.75 16 16 C -0.14 -2.49 5.81 29.85 0.17 -2.32 16 17 C 0.14 3.45 4.96 86.38 0.43 3.88 16 18 N -0.71 -11.79 5.56 -463.05 -2.57 -14.36 16 19 C 0.49 11.27 7.91 87.66 0.69 11.97 16 20 O -0.59 -21.64 16.50 16.00 0.26 -21.37 16 21 C 0.07 0.75 7.53 71.24 0.54 1.29 16 22 O -0.59 -9.95 13.19 -129.94 -1.71 -11.66 16 23 C -0.10 -3.02 4.91 -19.87 -0.10 -3.12 16 24 C -0.11 -2.85 9.32 22.27 0.21 -2.64 16 25 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 26 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 27 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 28 C -0.13 -4.04 9.67 22.27 0.22 -3.82 16 29 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.01 0.50 7.75 -2.39 -0.02 0.48 16 31 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 34 H 0.41 9.54 8.60 -92.71 -0.80 8.75 16 35 H 0.14 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.04 1.35 8.10 -2.39 -0.02 1.33 16 38 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 39 H 0.42 2.76 8.47 -92.71 -0.79 1.97 16 40 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.41 1.72 9.12 -74.06 -0.68 1.05 16 43 H 0.13 2.78 7.73 -2.91 -0.02 2.76 16 44 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 47 H 0.11 3.44 8.04 -2.91 -0.02 3.42 16 Total: -1.00 -91.11 403.69 -0.11 -91.23 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -1.26 Total: 21.61 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 4.59 Total: -9.86 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -3.97 Total: -91.12 kcal Atomic # 8 Polarization: -55.28 SS G_CDS: -1.50 Total: -56.78 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -91.11 -0.11 -91.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298538651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.233 kcal (2) G-P(sol) polarization free energy of solvation -91.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds