Wall clock time and date at job start Tue Mar 31 2020 23:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 N 1.46502 * 109.47005 * 64.99872 * 11 10 9 14 14 C 1.34773 * 120.00306 * 205.00035 * 13 11 10 15 15 O 1.21292 * 119.99815 * 0.02562 * 14 13 11 16 16 C 1.50694 * 120.00409 * 179.97438 * 14 13 11 17 17 C 1.52998 * 109.47517 * 179.97438 * 16 14 13 18 18 N 1.46502 * 109.47414 * 180.02562 * 17 16 14 19 19 C 1.34777 * 119.99990 * 180.02562 * 18 17 16 20 20 O 1.21279 * 119.99974 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.99799 * 180.02562 * 19 18 17 22 22 O 1.42908 * 109.47173 * 179.97438 * 21 19 18 23 23 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 24 24 C 1.38243 * 119.99881 * 279.73067 * 23 11 10 25 25 C 1.38236 * 119.99546 * 179.78181 * 24 23 11 26 26 C 1.38230 * 120.00068 * 0.44148 * 25 24 23 27 27 C 1.38228 * 120.00363 * 359.81337 * 26 25 24 28 28 C 1.38231 * 119.99932 * 359.97297 * 27 26 25 29 29 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 31 31 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 34 34 H 0.97003 * 120.00235 * 25.00789 * 13 11 10 35 35 H 1.08997 * 109.47334 * 300.00478 * 16 14 13 36 36 H 1.09008 * 109.47061 * 60.00564 * 16 14 13 37 37 H 1.08994 * 109.47712 * 300.00322 * 17 16 14 38 38 H 1.09004 * 109.47103 * 60.00404 * 17 16 14 39 39 H 0.96999 * 120.00074 * 359.97438 * 18 17 16 40 40 H 1.08996 * 109.47113 * 299.99504 * 21 19 18 41 41 H 1.08995 * 109.47366 * 60.00021 * 21 19 18 42 42 H 0.96694 * 113.99993 * 179.97438 * 22 21 19 43 43 H 1.07998 * 119.99681 * 359.97438 * 24 23 11 44 44 H 1.08001 * 119.99400 * 180.27071 * 25 24 23 45 45 H 1.08007 * 119.99792 * 179.83387 * 26 25 24 46 46 H 1.07998 * 120.00222 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.00023 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7882 -5.0068 0.8432 13 7 0.7300 -5.1185 -1.2503 14 6 -0.3716 -5.8934 -1.2976 15 8 -0.7423 -6.4817 -0.3038 16 6 -1.1436 -6.0281 -2.5848 17 6 -2.3393 -6.9575 -2.3676 18 7 -3.0895 -7.0889 -3.6191 19 6 -4.1911 -7.8640 -3.6663 20 8 -4.5616 -8.4523 -2.6726 21 6 -4.9623 -7.9996 -4.9539 22 8 -6.0793 -8.8676 -4.7510 23 6 2.4547 -6.1299 0.1250 24 6 3.1439 -6.5742 -0.9879 25 6 4.0412 -7.6195 -0.8734 26 6 4.2424 -8.2265 0.3521 27 6 3.5493 -7.7857 1.4639 28 6 2.6554 -6.7375 1.3503 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 0.8903 31 1 0.6246 -2.5571 -0.8897 32 1 2.8718 -3.6044 -0.8895 33 1 2.8718 -3.6044 0.8904 34 1 1.0262 -4.6478 -2.0451 35 1 -1.4982 -5.0469 -2.9002 36 1 -0.4951 -6.4451 -3.3554 37 1 -1.9845 -7.9387 -2.0524 38 1 -2.9880 -6.5410 -1.5969 39 1 -2.7937 -6.6175 -4.4136 40 1 -5.3169 -7.0186 -5.2700 41 1 -4.3135 -8.4170 -5.7238 42 1 -6.6223 -9.0008 -5.5399 43 1 2.9836 -6.1026 -1.9462 44 1 4.5829 -7.9638 -1.7420 45 1 4.9415 -9.0450 0.4410 46 1 3.7069 -8.2597 2.4215 47 1 2.1142 -6.3928 2.2191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001298538652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:45 Heat of formation + Delta-G solvation = -113.778023 kcal Electronic energy + Delta-G solvation = -27866.201304 eV Core-core repulsion = 23820.239696 eV Total energy + Delta-G solvation = -4045.961608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 10.11 seconds Orbital eigenvalues (eV) -40.16860 -39.75352 -38.69870 -36.81127 -35.88018 -35.12944 -33.23399 -32.01480 -30.96441 -30.67979 -30.37951 -28.10576 -26.53359 -24.07352 -23.35031 -22.44217 -21.19216 -20.96691 -20.19376 -19.97749 -18.21579 -17.11319 -17.05737 -16.88098 -16.35492 -16.30024 -15.74246 -15.56589 -15.46845 -15.05681 -14.52475 -14.30724 -14.14405 -14.11436 -13.43540 -13.35640 -13.23034 -13.05367 -12.79664 -12.68954 -12.56200 -12.14234 -12.00828 -11.78062 -11.57527 -11.15802 -10.98921 -10.97517 -10.70299 -10.62840 -10.59818 -10.08273 -10.00172 -9.64624 -9.58804 -9.29112 -9.22471 -8.81695 -8.74442 -8.46592 -8.41139 -6.06613 -4.09887 1.50242 1.55240 2.40625 2.59320 2.83269 3.27971 3.33354 3.35304 3.46337 3.97121 4.16055 4.39801 4.43537 4.64677 4.71010 4.79680 4.90678 4.95122 5.01823 5.03065 5.11493 5.25789 5.29151 5.33111 5.59090 5.63368 5.75651 5.76410 5.85420 5.89110 6.09641 6.16130 6.16604 6.31667 6.52007 6.60082 6.63350 6.70526 6.91940 6.93447 7.06277 7.15008 7.27507 7.58559 7.69722 7.74698 7.92149 8.01090 8.33157 8.44373 8.96955 9.54736 11.04130 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007153 B = 0.003005 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3913.679326 B = 9314.403687 C =12613.021077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.113 4.113 11 C 0.182 3.818 12 H 0.094 0.906 13 N -0.710 5.710 14 C 0.519 3.481 15 O -0.538 6.538 16 C -0.154 4.154 17 C 0.137 3.863 18 N -0.731 5.731 19 C 0.507 3.493 20 O -0.516 6.516 21 C 0.061 3.939 22 O -0.548 6.548 23 C -0.079 4.079 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.130 4.130 27 C -0.121 4.121 28 C -0.106 4.106 29 H 0.261 0.739 30 H 0.016 0.984 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.402 0.598 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.400 0.600 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.386 0.614 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.119 0.881 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.343 -15.490 -12.530 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.150 4.150 11 C 0.077 3.923 12 H 0.112 0.888 13 N -0.360 5.360 14 C 0.304 3.696 15 O -0.415 6.415 16 C -0.195 4.195 17 C 0.013 3.987 18 N -0.386 5.386 19 C 0.292 3.708 20 O -0.390 6.390 21 C -0.021 4.021 22 O -0.353 6.353 23 C -0.080 4.080 24 C -0.127 4.127 25 C -0.142 4.142 26 C -0.148 4.148 27 C -0.139 4.139 28 C -0.124 4.124 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.237 0.763 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.234 0.766 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.233 0.767 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.816 -16.247 -10.454 19.337 hybrid contribution 0.669 1.599 -1.435 2.250 sum -0.147 -14.648 -11.889 18.866 Atomic orbital electron populations 1.69951 1.06026 1.26772 1.50464 1.25009 0.94822 0.99219 0.95246 0.86677 0.79598 0.83192 0.78637 1.20277 1.21303 1.20220 1.21186 0.92972 0.91006 1.51064 0.92736 1.19087 0.93693 0.90881 0.97527 1.21977 0.99139 0.92207 1.01724 1.20124 0.91666 0.93134 0.87338 0.88783 1.45967 1.27394 1.48649 1.14013 1.20182 0.80693 0.78915 0.89799 1.90733 1.67976 1.46224 1.36598 1.21802 0.97632 1.02545 0.97492 1.21045 0.91877 1.00288 0.85478 1.45872 1.28279 1.50151 1.14273 1.20338 0.80811 0.79328 0.90325 1.90769 1.67007 1.44808 1.36369 1.21836 0.89627 0.95510 0.95096 1.86603 1.40684 1.68274 1.39751 1.20404 0.97185 0.96841 0.93593 1.20897 0.96434 0.97030 0.98294 1.21066 0.98796 0.96923 0.97462 1.21060 1.00297 1.00302 0.93162 1.21088 0.97015 0.97285 0.98500 1.21048 0.98170 0.95821 0.97408 0.92904 0.96544 0.96339 0.92549 0.91489 0.76350 0.87808 0.88401 0.90483 0.90222 0.76595 0.90387 0.90518 0.76704 0.86487 0.86542 0.86607 0.86342 0.85977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.60 4.86 -27.88 -0.14 0.47 16 10 C -0.11 -2.10 4.67 -26.74 -0.12 -2.22 16 11 C 0.18 3.00 2.17 -69.08 -0.15 2.85 16 12 H 0.09 1.77 7.44 -51.93 -0.39 1.38 16 13 N -0.71 -10.17 3.76 -54.94 -0.21 -10.37 16 14 C 0.52 7.62 7.79 -10.99 -0.09 7.53 16 15 O -0.54 -10.12 15.65 5.55 0.09 -10.03 16 16 C -0.15 -1.53 5.81 -27.89 -0.16 -1.69 16 17 C 0.14 1.62 4.96 -4.04 -0.02 1.60 16 18 N -0.73 -6.57 5.56 -60.29 -0.33 -6.90 16 19 C 0.51 5.89 7.91 -10.99 -0.09 5.81 16 20 O -0.52 -9.00 16.50 -14.35 -0.24 -9.24 16 21 C 0.06 0.42 7.53 36.00 0.27 0.69 16 22 O -0.55 -4.99 13.19 -55.14 -0.73 -5.72 16 23 C -0.08 -1.20 4.92 -104.62 -0.51 -1.71 16 24 C -0.11 -1.45 9.33 -39.58 -0.37 -1.82 16 25 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 26 C -0.13 -1.55 10.05 -39.59 -0.40 -1.95 16 27 C -0.12 -1.55 10.05 -39.59 -0.40 -1.95 16 28 C -0.11 -1.56 9.67 -39.58 -0.38 -1.94 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.45 7.75 -51.93 -0.40 0.05 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.40 4.90 8.60 -40.82 -0.35 4.55 16 35 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 38 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 39 H 0.40 1.98 8.47 -40.82 -0.35 1.63 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.39 1.17 9.12 45.56 0.42 1.58 16 43 H 0.12 1.38 7.71 -52.49 -0.40 0.98 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 46 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.12 1.72 8.04 -52.49 -0.42 1.30 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -38.53 403.66 -9.49 -48.02 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.51 Total: 6.53 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -3.36 Total: -9.10 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.19 Total: -42.49 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.88 Total: -24.99 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.53 -9.49 -48.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298538652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.758 kcal (2) G-P(sol) polarization free energy of solvation -38.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.11 seconds