Wall clock time and date at job start Tue Mar 31 2020 23:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47563 * 305.00337 * 11 10 9 13 13 N 1.46502 * 109.47005 * 64.99872 * 11 10 9 14 14 C 1.34773 * 120.00306 * 205.00035 * 13 11 10 15 15 O 1.21292 * 119.99815 * 0.02562 * 14 13 11 16 16 C 1.50694 * 120.00409 * 179.97438 * 14 13 11 17 17 C 1.52998 * 109.47517 * 179.97438 * 16 14 13 18 18 N 1.46502 * 109.47414 * 180.02562 * 17 16 14 19 19 C 1.34777 * 119.99990 * 180.02562 * 18 17 16 20 20 O 1.21279 * 119.99974 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.99799 * 180.02562 * 19 18 17 22 22 O 1.42908 * 109.47173 * 179.97438 * 21 19 18 23 23 C 1.50700 * 109.47798 * 185.00026 * 11 10 9 24 24 C 1.38243 * 119.99881 * 279.73067 * 23 11 10 25 25 C 1.38236 * 119.99546 * 179.78181 * 24 23 11 26 26 C 1.38230 * 120.00068 * 0.44148 * 25 24 23 27 27 C 1.38228 * 120.00363 * 359.81337 * 26 25 24 28 28 C 1.38231 * 119.99932 * 359.97297 * 27 26 25 29 29 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 31 31 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 32 32 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 33 33 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 34 34 H 0.97003 * 120.00235 * 25.00789 * 13 11 10 35 35 H 1.08997 * 109.47334 * 300.00478 * 16 14 13 36 36 H 1.09008 * 109.47061 * 60.00564 * 16 14 13 37 37 H 1.08994 * 109.47712 * 300.00322 * 17 16 14 38 38 H 1.09004 * 109.47103 * 60.00404 * 17 16 14 39 39 H 0.96999 * 120.00074 * 359.97438 * 18 17 16 40 40 H 1.08996 * 109.47113 * 299.99504 * 21 19 18 41 41 H 1.08995 * 109.47366 * 60.00021 * 21 19 18 42 42 H 0.96694 * 113.99993 * 179.97438 * 22 21 19 43 43 H 1.07998 * 119.99681 * 359.97438 * 24 23 11 44 44 H 1.08001 * 119.99400 * 180.27071 * 25 24 23 45 45 H 1.08007 * 119.99792 * 179.83387 * 26 25 24 46 46 H 1.07998 * 120.00222 * 180.02562 * 27 26 25 47 47 H 1.08000 * 120.00023 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 1 0.7882 -5.0068 0.8432 13 7 0.7300 -5.1185 -1.2503 14 6 -0.3716 -5.8934 -1.2976 15 8 -0.7423 -6.4817 -0.3038 16 6 -1.1436 -6.0281 -2.5848 17 6 -2.3393 -6.9575 -2.3676 18 7 -3.0895 -7.0889 -3.6191 19 6 -4.1911 -7.8640 -3.6663 20 8 -4.5616 -8.4523 -2.6726 21 6 -4.9623 -7.9996 -4.9539 22 8 -6.0793 -8.8676 -4.7510 23 6 2.4547 -6.1299 0.1250 24 6 3.1439 -6.5742 -0.9879 25 6 4.0412 -7.6195 -0.8734 26 6 4.2424 -8.2265 0.3521 27 6 3.5493 -7.7857 1.4639 28 6 2.6554 -6.7375 1.3503 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 0.8903 31 1 0.6246 -2.5571 -0.8897 32 1 2.8718 -3.6044 -0.8895 33 1 2.8718 -3.6044 0.8904 34 1 1.0262 -4.6478 -2.0451 35 1 -1.4982 -5.0469 -2.9002 36 1 -0.4951 -6.4451 -3.3554 37 1 -1.9845 -7.9387 -2.0524 38 1 -2.9880 -6.5410 -1.5969 39 1 -2.7937 -6.6175 -4.4136 40 1 -5.3169 -7.0186 -5.2700 41 1 -4.3135 -8.4170 -5.7238 42 1 -6.6223 -9.0008 -5.5399 43 1 2.9836 -6.1026 -1.9462 44 1 4.5829 -7.9638 -1.7420 45 1 4.9415 -9.0450 0.4410 46 1 3.7069 -8.2597 2.4215 47 1 2.1142 -6.3928 2.2191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001298538652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:16 Heat of formation + Delta-G solvation = -143.312144 kcal Electronic energy + Delta-G solvation = -27867.482000 eV Core-core repulsion = 23820.239696 eV Total energy + Delta-G solvation = -4047.242304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 22.18 seconds Orbital eigenvalues (eV) -41.30156 -40.72326 -39.78216 -37.47975 -37.18322 -36.18640 -35.13460 -33.30234 -32.12274 -31.81291 -31.62659 -28.89815 -28.06634 -25.55443 -24.48608 -23.47850 -22.61506 -21.93477 -21.49714 -21.18460 -18.89783 -18.54762 -18.12438 -17.98594 -17.62548 -17.20929 -16.91719 -16.59513 -16.48300 -16.39674 -16.03244 -15.41687 -15.09758 -15.02036 -14.84314 -14.56897 -14.39538 -14.22749 -14.14643 -13.85928 -13.70020 -13.38859 -13.35873 -12.98147 -12.81765 -12.54375 -12.50534 -12.45083 -12.14016 -11.90778 -11.75626 -11.42798 -11.21546 -11.13050 -11.06783 -10.82985 -10.53730 -10.23291 -10.07295 -9.77339 -9.56840 -8.18072 -6.28961 0.46550 0.54294 1.41604 1.43700 1.51442 1.54384 1.66323 1.78125 2.41175 2.42099 2.93929 3.15525 3.55261 3.73792 3.80828 3.85957 3.97240 4.01801 4.04889 4.17435 4.26683 4.31321 4.31557 4.36784 4.41939 4.50594 4.66639 4.67269 4.79478 4.82093 4.90859 4.99538 5.10357 5.18218 5.20267 5.30630 5.43544 5.52385 5.60483 5.63862 5.68971 5.83235 5.86214 6.15568 6.25087 6.46986 6.60313 6.88124 6.91616 7.22410 7.30347 7.40417 8.92755 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007153 B = 0.003005 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3913.679326 B = 9314.403687 C =12613.021077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.032 3.968 10 C -0.094 4.094 11 C 0.193 3.807 12 H 0.057 0.943 13 N -0.703 5.703 14 C 0.511 3.489 15 O -0.588 6.588 16 C -0.136 4.136 17 C 0.142 3.858 18 N -0.709 5.709 19 C 0.495 3.505 20 O -0.588 6.588 21 C 0.067 3.933 22 O -0.586 6.586 23 C -0.099 4.099 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.127 4.127 28 C -0.133 4.133 29 H 0.262 0.738 30 H -0.024 1.024 31 H 0.010 0.990 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.415 0.585 35 H 0.126 0.874 36 H 0.143 0.857 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.425 0.575 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.409 0.591 43 H 0.134 0.866 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.138 0.862 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 -15.634 -15.969 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.132 4.132 11 C 0.088 3.912 12 H 0.075 0.925 13 N -0.354 5.354 14 C 0.298 3.702 15 O -0.469 6.469 16 C -0.176 4.176 17 C 0.018 3.982 18 N -0.364 5.364 19 C 0.282 3.718 20 O -0.467 6.467 21 C -0.013 4.013 22 O -0.396 6.396 23 C -0.100 4.100 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.146 4.146 27 C -0.145 4.145 28 C -0.151 4.151 29 H 0.071 0.929 30 H -0.006 1.006 31 H 0.028 0.972 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.252 0.748 35 H 0.144 0.856 36 H 0.161 0.839 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.263 0.737 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.261 0.739 43 H 0.152 0.848 44 H 0.166 0.834 45 H 0.165 0.835 46 H 0.156 0.844 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.487 -16.355 -13.988 21.572 hybrid contribution -0.032 1.600 -0.339 1.636 sum 1.455 -14.755 -14.327 20.618 Atomic orbital electron populations 1.70092 1.07727 1.27672 1.51656 1.25909 0.95643 1.03114 0.94864 0.85584 0.78300 0.78479 0.79182 1.18697 1.21231 1.19737 1.21645 0.93539 0.92219 1.50443 0.92066 1.18942 0.94023 0.92421 0.95088 1.21702 0.97927 0.91366 1.02209 1.19695 0.91263 0.92978 0.87282 0.92486 1.45887 1.27276 1.48592 1.13650 1.21040 0.80442 0.77814 0.90892 1.90718 1.69105 1.48208 1.38852 1.21745 0.96701 1.03470 0.95653 1.20733 0.92183 0.99229 0.86099 1.45638 1.27273 1.49456 1.14073 1.21463 0.80932 0.78074 0.91327 1.90737 1.68943 1.47816 1.39217 1.21987 0.89421 0.97363 0.92557 1.86538 1.41840 1.68981 1.42218 1.20270 0.97909 0.97086 0.94722 1.21128 0.96385 0.97547 0.98173 1.21470 0.98061 0.95934 0.98679 1.21486 0.99943 1.00571 0.92631 1.21367 0.96438 0.96589 1.00112 1.21181 0.99424 0.97288 0.97235 0.92922 1.00594 0.97197 0.90672 0.92222 0.74798 0.85553 0.83945 0.92872 0.93918 0.73669 0.86955 0.86515 0.73916 0.84799 0.83386 0.83530 0.84424 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.22 13.29 21.45 0.28 -54.93 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.03 1.61 4.86 29.85 0.15 1.75 16 10 C -0.09 -3.59 4.67 30.59 0.14 -3.45 16 11 C 0.19 6.66 2.17 44.24 0.10 6.76 16 12 H 0.06 2.37 7.44 -2.39 -0.02 2.35 16 13 N -0.70 -20.24 3.76 -446.10 -1.68 -21.92 16 14 C 0.51 15.31 7.79 87.66 0.68 15.99 16 15 O -0.59 -23.71 15.65 -3.07 -0.05 -23.76 16 16 C -0.14 -2.49 5.81 29.85 0.17 -2.32 16 17 C 0.14 3.46 4.96 86.38 0.43 3.88 16 18 N -0.71 -11.79 5.56 -463.06 -2.57 -14.37 16 19 C 0.49 11.27 7.91 87.66 0.69 11.97 16 20 O -0.59 -21.64 16.50 16.01 0.26 -21.37 16 21 C 0.07 0.75 7.53 71.24 0.54 1.29 16 22 O -0.59 -9.95 13.19 -129.94 -1.71 -11.66 16 23 C -0.10 -3.03 4.92 -19.86 -0.10 -3.12 16 24 C -0.11 -2.85 9.33 22.27 0.21 -2.64 16 25 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 26 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 27 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 28 C -0.13 -4.04 9.67 22.27 0.22 -3.82 16 29 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 30 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 31 H 0.01 0.49 7.75 -2.39 -0.02 0.47 16 32 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.41 9.56 8.60 -92.71 -0.80 8.76 16 35 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.14 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 38 H 0.04 1.35 8.10 -2.38 -0.02 1.33 16 39 H 0.42 2.76 8.47 -92.71 -0.79 1.97 16 40 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.41 1.73 9.12 -74.06 -0.68 1.05 16 43 H 0.13 2.78 7.71 -2.91 -0.02 2.76 16 44 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 47 H 0.11 3.44 8.04 -2.91 -0.02 3.42 16 Total: -1.00 -91.09 403.66 -0.10 -91.19 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -1.26 Total: 21.87 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 4.59 Total: -9.94 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -3.96 Total: -91.21 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -1.50 Total: -56.80 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -91.09 -0.10 -91.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001298538652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.121 kcal (2) G-P(sol) polarization free energy of solvation -91.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.18 seconds