Wall clock time and date at job start Tue Mar 31 2020 17:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46977 * 2 1 4 4 N 1.46501 * 109.46909 * 119.99476 * 2 1 3 5 5 C 1.34775 * 119.99863 * 155.00185 * 4 2 1 6 6 S 1.71199 * 120.00234 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99639 * 180.02562 * 5 4 2 8 8 N 1.40092 * 120.00267 * 0.02562 * 7 5 4 9 9 C 1.29800 * 119.99942 * 179.97438 * 8 7 5 10 10 C 1.47411 * 120.00087 * 179.97438 * 9 8 7 11 11 C 1.39759 * 120.08238 * 180.02562 * 10 9 8 12 12 C 1.37751 * 119.91668 * 180.02562 * 11 10 9 13 13 C 1.39076 * 120.08409 * 0.02562 * 12 11 10 14 14 N 1.39500 * 119.91905 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00121 * 359.97438 * 14 13 12 16 16 C 1.46506 * 119.99781 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.46928 * 90.00109 * 16 14 13 18 18 H 1.08003 * 119.99963 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00518 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46948 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47174 * 120.00320 * 21 19 17 24 24 H 1.48497 * 109.47378 * 240.00235 * 21 19 17 25 25 C 1.39085 * 120.16307 * 0.26587 * 13 12 11 26 26 C 1.37760 * 120.07921 * 359.45702 * 25 13 12 27 27 H 1.08997 * 109.47236 * 300.00327 * 1 2 3 28 28 H 1.09001 * 109.47027 * 60.00243 * 1 2 3 29 29 H 1.08996 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47236 * 239.99673 * 2 1 3 31 31 H 1.09000 * 109.47267 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47118 * 299.98991 * 3 2 1 33 33 H 1.09002 * 109.47824 * 59.99908 * 3 2 1 34 34 H 0.97009 * 120.00066 * 335.00297 * 4 2 1 35 35 H 0.97001 * 119.99483 * 179.97438 * 7 5 4 36 36 H 1.08002 * 120.00335 * 359.97438 * 9 8 7 37 37 H 1.08003 * 120.03859 * 0.02562 * 11 10 9 38 38 H 1.08007 * 119.95463 * 179.97438 * 12 11 10 39 39 H 1.08999 * 109.46532 * 269.99882 * 15 14 13 40 40 H 1.09000 * 109.46877 * 29.99907 * 15 14 13 41 41 H 1.09000 * 109.47251 * 150.00012 * 15 14 13 42 42 H 1.09004 * 109.47073 * 209.99937 * 16 14 13 43 43 H 1.09000 * 109.47212 * 330.00019 * 16 14 13 44 44 H 0.96992 * 120.00316 * 179.97438 * 20 19 17 45 45 H 1.07995 * 119.96186 * 179.70280 * 25 13 12 46 46 H 1.07992 * 120.04033 * 180.24957 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 3.2403 -1.2590 1.1945 6 16 4.2216 -1.1749 -0.2057 7 7 3.6892 -1.8947 2.2949 8 7 2.8856 -1.9650 3.4403 9 6 3.3178 -2.5777 4.4998 10 6 2.4724 -2.6511 5.7052 11 6 2.9363 -3.3099 6.8471 12 6 2.1433 -3.3770 7.9714 13 6 0.8822 -2.7906 7.9710 14 7 0.0817 -2.8611 9.1113 15 6 0.5695 -3.5526 10.3072 16 6 -1.2469 -2.2435 9.1129 17 6 -2.2677 -3.2469 8.6416 18 1 -1.9579 -4.2448 8.3685 19 6 -3.5972 -2.8911 8.5599 20 7 -3.9746 -1.6761 8.8928 21 14 -4.8626 -4.1346 7.9749 22 1 -4.1865 -5.4195 7.6632 23 1 -5.8720 -4.3530 9.0420 24 1 -5.5353 -3.6200 6.7552 25 6 0.4146 -2.1394 6.8344 26 6 1.2044 -2.0634 5.7082 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.4621 -0.7385 1.9896 35 1 4.5686 -2.3042 2.2936 36 1 4.2969 -3.0336 4.4984 37 1 3.9154 -3.7658 6.8480 38 1 2.5010 -3.8863 8.8541 39 1 0.2815 -4.6028 10.2623 40 1 1.6558 -3.4753 10.3538 41 1 0.1342 -3.0940 11.1950 42 1 -1.4956 -1.9194 10.1235 43 1 -1.2481 -1.3825 8.4445 44 1 -4.9099 -1.4257 8.8350 45 1 -0.5671 -1.6894 6.8361 46 1 0.8423 -1.5541 4.8274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317712089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:37 Heat of formation + Delta-G solvation = 81.792169 kcal Electronic energy + Delta-G solvation = -25216.871995 eV Core-core repulsion = 21654.436569 eV Total energy + Delta-G solvation = -3562.435426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 12.48 seconds Orbital eigenvalues (eV) -39.56602 -39.15750 -37.30708 -35.98894 -33.82157 -32.82234 -31.21587 -30.84659 -29.21476 -28.01476 -27.51620 -25.76913 -24.23548 -22.99023 -22.39555 -21.98354 -21.21356 -19.92214 -18.44754 -18.10732 -16.89388 -16.66563 -16.30280 -15.57399 -15.22214 -15.08173 -14.90819 -14.41916 -14.38965 -14.09670 -13.93252 -13.48000 -13.24666 -13.02241 -12.68982 -12.56234 -12.40842 -12.30646 -11.89983 -11.78895 -11.62856 -11.49117 -11.44150 -11.36583 -11.16004 -11.02897 -10.88985 -10.63844 -10.40404 -10.13735 -10.00867 -9.51515 -8.79470 -8.67691 -8.63438 -7.94171 -7.70881 -6.71463 -6.20847 -4.34110 0.72045 1.53325 1.58500 1.82568 2.50678 2.61770 2.80881 3.15255 3.24310 3.28066 3.83013 4.24591 4.29295 4.49638 4.53432 4.75525 4.84005 5.00324 5.06292 5.19014 5.21618 5.32266 5.36003 5.47742 5.53025 5.59130 5.68774 5.71088 5.80351 5.84542 5.98715 6.03791 6.05900 6.08170 6.11878 6.29395 6.44659 6.63642 6.69022 6.80686 6.94393 7.01722 7.10636 7.21414 7.63799 7.72485 7.91846 7.98045 8.13498 8.73819 9.33630 10.80000 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.002557 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.795110 B =10945.865952 C =12779.098111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 C -0.163 4.163 4 N -0.660 5.660 5 C 0.600 3.400 6 S -0.654 6.654 7 N -0.540 5.540 8 N -0.321 5.321 9 C 0.187 3.813 10 C -0.170 4.170 11 C -0.028 4.028 12 C -0.228 4.228 13 C 0.267 3.733 14 N -0.601 5.601 15 C 0.093 3.907 16 C 0.244 3.756 17 C -0.535 4.535 18 H 0.061 0.939 19 C 0.063 3.937 20 N -0.893 5.893 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.198 4.198 26 C -0.020 4.020 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.412 0.588 35 H 0.411 0.589 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.039 0.961 44 H 0.265 0.735 45 H 0.138 0.862 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.652 1.153 -7.058 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.027 3.973 3 C -0.222 4.222 4 N -0.288 5.288 5 C 0.239 3.761 6 S -0.529 6.529 7 N -0.262 5.262 8 N -0.128 5.128 9 C -0.020 4.020 10 C -0.177 4.177 11 C -0.049 4.049 12 C -0.251 4.251 13 C 0.155 3.845 14 N -0.303 5.303 15 C -0.051 4.051 16 C 0.124 3.876 17 C -0.574 4.574 18 H 0.079 0.921 19 C -0.139 4.139 20 N -0.531 5.531 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.220 4.220 26 C -0.042 4.042 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.251 0.749 35 H 0.254 0.746 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.156 0.844 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.064 1.940 -8.251 13.938 hybrid contribution -0.488 -1.415 1.160 1.893 sum 10.576 0.525 -7.091 12.744 Atomic orbital electron populations 1.22126 0.93448 1.03111 1.03478 1.21510 0.94143 0.93802 0.87831 1.22169 1.03315 0.94526 1.02192 1.45195 1.14131 1.51351 1.18114 1.21965 0.86625 0.79558 0.87990 1.93536 1.56898 1.81288 1.21168 1.46180 1.18090 1.53039 1.08861 1.74706 1.20609 1.22453 0.95016 1.24474 0.96762 0.90355 0.90409 1.17830 0.96227 1.11287 0.92323 1.20751 0.98047 0.94848 0.91303 1.20517 0.95118 1.09658 0.99844 1.18200 0.89172 0.89918 0.87175 1.47339 1.17386 1.55666 1.09871 1.21593 0.98442 0.97106 0.87929 1.19446 0.76297 0.93551 0.98279 1.21536 0.91847 0.98817 1.45196 0.92104 1.24955 0.98466 0.95471 0.95053 1.69923 1.17275 1.18150 1.47771 0.86453 0.81174 0.81401 0.78539 1.19680 1.20842 1.20737 1.20903 1.02223 1.06348 0.92528 1.20970 0.91797 0.94387 0.97022 0.91788 0.90142 0.91722 0.86769 0.90833 0.91026 0.92696 0.74936 0.74590 0.86618 0.86341 0.86000 0.93429 0.92367 0.91558 0.94776 0.94312 0.92513 0.84381 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.38 37.16 0.35 -0.87 16 2 C 0.13 1.23 2.95 -67.93 -0.20 1.03 16 3 C -0.16 -1.47 9.43 37.16 0.35 -1.11 16 4 N -0.66 -7.08 5.04 -55.52 -0.28 -7.36 16 5 C 0.60 7.52 7.94 -86.92 -0.69 6.82 16 6 S -0.65 -10.08 28.14 -107.50 -3.02 -13.11 16 7 N -0.54 -6.00 6.26 29.96 0.19 -5.81 16 8 N -0.32 -3.63 9.46 32.15 0.30 -3.32 16 9 C 0.19 1.93 10.75 -14.68 -0.16 1.77 16 10 C -0.17 -2.13 5.87 -105.02 -0.62 -2.74 16 11 C -0.03 -0.33 9.78 -39.19 -0.38 -0.71 16 12 C -0.23 -3.16 9.19 -39.45 -0.36 -3.52 16 13 C 0.27 4.58 6.56 -83.74 -0.55 4.03 16 14 N -0.60 -11.21 2.99 -180.94 -0.54 -11.75 16 15 C 0.09 1.38 10.23 59.85 0.61 2.00 16 16 C 0.24 5.53 4.94 -5.19 -0.03 5.50 16 17 C -0.54 -13.54 9.39 -34.44 -0.32 -13.86 16 18 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -24.15 13.29 55.43 0.74 -23.42 16 21 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.20 -3.42 9.18 -39.44 -0.36 -3.78 16 26 C -0.02 -0.30 9.57 -39.19 -0.37 -0.67 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.11 1.25 6.81 -51.93 -0.35 0.89 16 31 H 0.07 0.81 7.49 -51.93 -0.39 0.43 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.41 4.26 7.64 -40.82 -0.31 3.95 16 35 H 0.41 3.96 8.63 -182.60 -1.58 2.39 16 36 H 0.12 0.83 8.02 -52.49 -0.42 0.41 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 38 H 0.12 1.46 6.12 -52.48 -0.32 1.14 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.70 6.18 -51.93 -0.32 0.38 16 41 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 42 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 43 H 0.04 0.93 6.19 -51.93 -0.32 0.61 16 44 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 45 H 0.14 2.69 6.13 -52.49 -0.32 2.37 16 46 H 0.12 1.64 7.55 -52.49 -0.40 1.24 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -29.58 396.21 -12.56 -42.14 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -8.06 Total: 6.04 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.83 Total: -4.57 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.41 Total: -51.65 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: -10.08 SS G_CDS: -3.02 Total: -13.11 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.58 -12.56 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317712089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.932 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.48 seconds