Wall clock time and date at job start Tue Mar 31 2020 17:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46977 * 2 1 4 4 N 1.46501 * 109.46909 * 119.99476 * 2 1 3 5 5 C 1.34775 * 119.99863 * 155.00185 * 4 2 1 6 6 S 1.71199 * 120.00234 * 359.97438 * 5 4 2 7 7 N 1.34780 * 119.99639 * 180.02562 * 5 4 2 8 8 N 1.40092 * 120.00267 * 0.02562 * 7 5 4 9 9 C 1.29800 * 119.99942 * 179.97438 * 8 7 5 10 10 C 1.47411 * 120.00087 * 179.97438 * 9 8 7 11 11 C 1.39759 * 120.08238 * 180.02562 * 10 9 8 12 12 C 1.37751 * 119.91668 * 180.02562 * 11 10 9 13 13 C 1.39076 * 120.08409 * 0.02562 * 12 11 10 14 14 N 1.39500 * 119.91905 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00121 * 359.97438 * 14 13 12 16 16 C 1.46506 * 119.99781 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.46928 * 90.00109 * 16 14 13 18 18 H 1.08003 * 119.99963 * 0.02562 * 17 16 14 19 19 C 1.37873 * 119.99865 * 179.97438 * 17 16 14 20 20 N 1.31514 * 120.00518 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46948 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47174 * 120.00320 * 21 19 17 24 24 H 1.48497 * 109.47378 * 240.00235 * 21 19 17 25 25 C 1.39085 * 120.16307 * 0.26587 * 13 12 11 26 26 C 1.37760 * 120.07921 * 359.45702 * 25 13 12 27 27 H 1.08997 * 109.47236 * 300.00327 * 1 2 3 28 28 H 1.09001 * 109.47027 * 60.00243 * 1 2 3 29 29 H 1.08996 * 109.47039 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47236 * 239.99673 * 2 1 3 31 31 H 1.09000 * 109.47267 * 179.97438 * 3 2 1 32 32 H 1.09004 * 109.47118 * 299.98991 * 3 2 1 33 33 H 1.09002 * 109.47824 * 59.99908 * 3 2 1 34 34 H 0.97009 * 120.00066 * 335.00297 * 4 2 1 35 35 H 0.97001 * 119.99483 * 179.97438 * 7 5 4 36 36 H 1.08002 * 120.00335 * 359.97438 * 9 8 7 37 37 H 1.08003 * 120.03859 * 0.02562 * 11 10 9 38 38 H 1.08007 * 119.95463 * 179.97438 * 12 11 10 39 39 H 1.08999 * 109.46532 * 269.99882 * 15 14 13 40 40 H 1.09000 * 109.46877 * 29.99907 * 15 14 13 41 41 H 1.09000 * 109.47251 * 150.00012 * 15 14 13 42 42 H 1.09004 * 109.47073 * 209.99937 * 16 14 13 43 43 H 1.09000 * 109.47212 * 330.00019 * 16 14 13 44 44 H 0.96992 * 120.00316 * 179.97438 * 20 19 17 45 45 H 1.07995 * 119.96186 * 179.70280 * 25 13 12 46 46 H 1.07992 * 120.04033 * 180.24957 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 3.2403 -1.2590 1.1945 6 16 4.2216 -1.1749 -0.2057 7 7 3.6892 -1.8947 2.2949 8 7 2.8856 -1.9650 3.4403 9 6 3.3178 -2.5777 4.4998 10 6 2.4724 -2.6511 5.7052 11 6 2.9363 -3.3099 6.8471 12 6 2.1433 -3.3770 7.9714 13 6 0.8822 -2.7906 7.9710 14 7 0.0817 -2.8611 9.1113 15 6 0.5695 -3.5526 10.3072 16 6 -1.2469 -2.2435 9.1129 17 6 -2.2677 -3.2469 8.6416 18 1 -1.9579 -4.2448 8.3685 19 6 -3.5972 -2.8911 8.5599 20 7 -3.9746 -1.6761 8.8928 21 14 -4.8626 -4.1346 7.9749 22 1 -4.1865 -5.4195 7.6632 23 1 -5.8720 -4.3530 9.0420 24 1 -5.5353 -3.6200 6.7552 25 6 0.4146 -2.1394 6.8344 26 6 1.2044 -2.0634 5.7082 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.4621 -0.7385 1.9896 35 1 4.5686 -2.3042 2.2936 36 1 4.2969 -3.0336 4.4984 37 1 3.9154 -3.7658 6.8480 38 1 2.5010 -3.8863 8.8541 39 1 0.2815 -4.6028 10.2623 40 1 1.6558 -3.4753 10.3538 41 1 0.1342 -3.0940 11.1950 42 1 -1.4956 -1.9194 10.1235 43 1 -1.2481 -1.3825 8.4445 44 1 -4.9099 -1.4257 8.8350 45 1 -0.5671 -1.6894 6.8361 46 1 0.8423 -1.5541 4.8274 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317712089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:01 Heat of formation + Delta-G solvation = 66.579707 kcal Electronic energy + Delta-G solvation = -25217.531657 eV Core-core repulsion = 21654.436569 eV Total energy + Delta-G solvation = -3563.095088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.152 amu Computer time = 36.22 seconds Orbital eigenvalues (eV) -40.59754 -40.22202 -38.26525 -37.19958 -35.02994 -34.45391 -32.14679 -32.01365 -30.42396 -29.54003 -28.20308 -27.07072 -25.57968 -24.27213 -23.42940 -22.95483 -22.33518 -21.05429 -19.37987 -19.03964 -18.66458 -18.08606 -17.28343 -16.83028 -16.41795 -16.11281 -15.95394 -15.87346 -15.36605 -15.25729 -15.12976 -14.49637 -14.30778 -14.29509 -14.03731 -13.60438 -13.21430 -13.19180 -13.15585 -13.05090 -12.85252 -12.76810 -12.64714 -12.58588 -12.51894 -12.20078 -12.17496 -11.96812 -11.71749 -11.62120 -11.28353 -10.77243 -10.65162 -9.87985 -9.76989 -9.09630 -8.89750 -8.36739 -7.83678 -6.38799 -0.25428 0.50390 0.53875 0.69768 1.35384 1.38269 1.48890 1.55167 1.62007 1.91909 2.32314 2.55740 3.05331 3.14068 3.69143 3.79599 3.94739 4.04226 4.13738 4.24499 4.28033 4.36112 4.50670 4.61018 4.67175 4.69371 4.73639 4.82808 4.84783 4.86966 4.96355 4.98834 5.05559 5.12925 5.17610 5.20223 5.28382 5.32493 5.50759 5.56232 5.60761 5.66799 5.75861 6.03885 6.05599 6.13112 6.42384 6.78479 6.83259 6.86186 7.33029 8.81401 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011167 B = 0.002557 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.795110 B =10945.865952 C =12779.098111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.129 3.871 3 C -0.157 4.157 4 N -0.650 5.650 5 C 0.610 3.390 6 S -0.714 6.714 7 N -0.529 5.529 8 N -0.334 5.334 9 C 0.196 3.804 10 C -0.160 4.160 11 C -0.013 4.013 12 C -0.223 4.223 13 C 0.238 3.762 14 N -0.620 5.620 15 C 0.093 3.907 16 C 0.261 3.739 17 C -0.539 4.539 18 H 0.050 0.950 19 C 0.015 3.985 20 N -0.925 5.925 21 Si 0.957 3.043 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.279 1.279 25 C -0.226 4.226 26 C -0.026 4.026 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.416 0.584 35 H 0.419 0.581 36 H 0.162 0.838 37 H 0.169 0.831 38 H 0.146 0.854 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.013 0.987 43 H 0.015 0.985 44 H 0.267 0.733 45 H 0.099 0.901 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.504 -0.264 -7.385 15.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.026 3.974 3 C -0.216 4.216 4 N -0.277 5.277 5 C 0.245 3.755 6 S -0.590 6.590 7 N -0.251 5.251 8 N -0.141 5.141 9 C -0.012 4.012 10 C -0.166 4.166 11 C -0.034 4.034 12 C -0.246 4.246 13 C 0.130 3.870 14 N -0.325 5.325 15 C -0.050 4.050 16 C 0.140 3.860 17 C -0.578 4.578 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.565 5.565 21 Si 0.783 3.217 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.204 1.204 25 C -0.249 4.249 26 C -0.047 4.047 27 H 0.086 0.914 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.255 0.745 35 H 0.264 0.736 36 H 0.179 0.821 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.081 0.919 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.076 0.924 45 H 0.117 0.883 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.943 0.511 -8.580 15.537 hybrid contribution -0.968 -0.948 1.203 1.812 sum 11.976 -0.437 -7.377 14.072 Atomic orbital electron populations 1.22101 0.91647 1.03220 1.04550 1.21610 0.95443 0.93676 0.86697 1.22112 1.01759 0.94377 1.03315 1.45329 1.13415 1.50360 1.18609 1.21592 0.86653 0.79818 0.87462 1.93647 1.58411 1.83295 1.23620 1.46012 1.18348 1.52379 1.08371 1.74724 1.21038 1.22942 0.95373 1.24645 0.97952 0.89677 0.88881 1.18064 0.95194 1.09704 0.93628 1.21240 0.99426 0.93155 0.89588 1.20822 0.93549 1.08618 1.01562 1.18498 0.90618 0.91388 0.86543 1.47126 1.16311 1.57265 1.11787 1.21723 1.00431 0.96370 0.86458 1.18891 0.78557 0.92582 0.96020 1.21766 0.92744 0.98710 1.44592 0.93129 1.25720 1.00382 0.97070 0.95303 1.70023 1.17682 1.19737 1.49045 0.85511 0.78864 0.79210 0.78132 1.19437 1.20205 1.20429 1.20737 1.01494 1.08243 0.94445 1.21055 0.92780 0.94704 0.96130 0.91387 0.88390 0.92081 0.88251 0.93088 0.89266 0.92216 0.74483 0.73611 0.82136 0.81380 0.83664 0.93703 0.88909 0.91930 0.96896 0.96669 0.92396 0.88283 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.38 71.98 0.68 -1.43 16 2 C 0.13 2.32 2.95 44.99 0.13 2.45 16 3 C -0.16 -2.68 9.43 71.98 0.68 -2.00 16 4 N -0.65 -13.24 5.04 -329.57 -1.66 -14.90 16 5 C 0.61 14.53 7.94 179.05 1.42 15.96 16 6 S -0.71 -21.91 28.14 -56.49 -1.59 -23.50 16 7 N -0.53 -10.47 6.26 -59.11 -0.37 -10.84 16 8 N -0.33 -6.54 9.46 -52.20 -0.49 -7.04 16 9 C 0.20 3.15 10.75 87.41 0.94 4.09 16 10 C -0.16 -3.44 5.87 -20.12 -0.12 -3.56 16 11 C -0.01 -0.25 9.78 22.52 0.22 -0.03 16 12 C -0.22 -5.48 9.19 22.36 0.21 -5.27 16 13 C 0.24 8.14 6.56 38.33 0.25 8.39 16 14 N -0.62 -23.71 2.99 -726.38 -2.17 -25.88 16 15 C 0.09 2.71 10.23 127.77 1.31 4.01 16 16 C 0.26 12.57 4.94 85.63 0.42 12.99 16 17 C -0.54 -28.37 9.39 25.60 0.24 -28.13 16 18 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 19 C 0.01 0.79 5.46 84.65 0.46 1.25 16 20 N -0.93 -51.88 13.29 21.45 0.28 -51.60 16 21 Si 0.96 42.14 29.54 68.60 2.03 44.16 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 C -0.23 -8.14 9.18 22.36 0.21 -7.93 16 26 C -0.03 -0.73 9.57 22.53 0.22 -0.51 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 2.15 6.81 -2.39 -0.02 2.13 16 31 H 0.05 1.12 7.49 -2.39 -0.02 1.10 16 32 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.42 8.04 7.64 -92.70 -0.71 7.33 16 35 H 0.42 6.87 8.63 -213.32 -1.84 5.03 16 36 H 0.16 1.25 8.02 -2.91 -0.02 1.22 16 37 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.15 2.86 6.12 -2.91 -0.02 2.84 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.09 2.00 6.18 -2.39 -0.01 1.98 16 41 H 0.06 1.82 7.89 -2.39 -0.02 1.80 16 42 H 0.01 0.67 7.89 -2.38 -0.02 0.65 16 43 H 0.02 0.80 6.19 -2.39 -0.01 0.78 16 44 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 45 H 0.10 4.26 6.13 -2.91 -0.02 4.24 16 46 H 0.12 3.33 7.55 -2.91 -0.02 3.30 16 Total: -1.00 -68.40 396.21 1.74 -66.66 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -1.54 Total: 22.64 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 7.26 Total: 0.28 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -4.41 Total: -110.24 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: -21.91 SS G_CDS: -1.59 Total: -23.50 kcal Total: -68.40 1.74 -66.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317712089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.242 kcal (2) G-P(sol) polarization free energy of solvation -68.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 36.22 seconds