Wall clock time and date at job start Tue Mar 31 2020 17:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 C 1.50701 * 109.47355 * 180.02562 * 9 7 6 11 11 C 1.35125 * 125.68723 * 124.99936 * 10 9 7 12 12 N 1.36811 * 107.18285 * 179.97438 * 11 10 9 13 13 C 1.36609 * 132.54442 * 180.02562 * 12 11 10 14 14 C 1.35134 * 120.57438 * 179.97438 * 13 12 11 15 15 F 1.35097 * 119.87694 * 180.02562 * 14 13 12 16 16 C 1.40615 * 120.24649 * 0.03491 * 14 13 12 17 17 C 1.36017 * 119.68661 * 359.97438 * 16 14 13 18 18 C 1.37032 * 107.01628 * 359.97438 * 12 11 10 19 19 N 1.32611 * 108.02964 * 359.75996 * 18 12 11 20 20 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 21 21 C 1.36937 * 119.99934 * 274.99832 * 20 3 2 22 22 H 1.07998 * 120.00035 * 0.02562 * 21 20 3 23 23 C 1.38810 * 120.00229 * 180.02562 * 21 20 3 24 24 N 1.31626 * 119.99636 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00308 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47134 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47520 * 120.00104 * 25 23 21 28 28 H 1.48501 * 109.47007 * 240.00143 * 25 23 21 29 29 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 31 31 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 32 32 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 33 33 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 34 34 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 35 35 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 38 38 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 39 39 H 1.07997 * 126.41288 * 0.02562 * 11 10 9 40 40 H 1.07991 * 119.71331 * 359.97438 * 13 12 11 41 41 H 1.07996 * 120.15681 * 179.97438 * 16 14 13 42 42 H 1.08004 * 120.31052 * 180.02562 * 17 16 14 43 43 H 0.97000 * 120.00390 * 95.00648 * 20 3 2 44 44 H 0.97001 * 119.99765 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 6 7.4014 4.4748 -0.0701 11 6 8.1221 5.2077 -0.9472 12 7 9.4412 4.9195 -0.7268 13 6 10.5936 5.3623 -1.3116 14 6 11.7954 4.9067 -0.8940 15 9 12.9262 5.3545 -1.4821 16 6 11.8732 3.9682 0.1502 17 6 10.7322 3.5202 0.7397 18 6 9.4870 4.0062 0.2938 19 7 8.2425 3.7572 0.6779 20 7 1.6524 2.0974 1.2519 21 6 0.4155 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0484 3.2944 2.5548 24 7 0.8890 3.3291 3.5671 25 14 -1.6390 4.0795 2.7146 26 1 -2.3886 3.9046 1.4446 27 1 -2.3840 3.4305 3.8231 28 1 -1.4856 5.5282 3.0027 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0378 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4409 3.5484 0.1316 37 1 5.4717 5.0895 -0.7424 38 1 5.6107 4.8774 1.0193 39 1 7.7302 5.8934 -1.6838 40 1 10.5439 6.0825 -2.1147 41 1 12.8344 3.6048 0.4825 42 1 10.7803 2.7998 1.5429 43 1 2.2718 2.1232 1.9979 44 1 0.6323 3.7628 4.3959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318554819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:14 Heat of formation + Delta-G solvation = 17.734419 kcal Electronic energy + Delta-G solvation = -27477.058333 eV Core-core repulsion = 23345.631978 eV Total energy + Delta-G solvation = -4131.426355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.45475 -43.03567 -39.26846 -37.46927 -36.57509 -34.00417 -33.57078 -32.39151 -31.85952 -29.76118 -29.36055 -28.50163 -27.15669 -24.11929 -23.57988 -23.02530 -22.53127 -21.08746 -20.10585 -19.57838 -18.61473 -17.95210 -17.35298 -16.79043 -16.65392 -16.28952 -15.57554 -15.48803 -15.40984 -15.23554 -14.89727 -14.62272 -14.06591 -14.00917 -13.69352 -13.42299 -13.20502 -13.07335 -12.84466 -12.66872 -12.32029 -12.02373 -11.88327 -11.49160 -11.35486 -11.33764 -10.95759 -10.89059 -10.71420 -10.40706 -10.18000 -10.16577 -9.97981 -9.54092 -9.45220 -8.95694 -8.80432 -8.51148 -8.16665 -7.02094 -5.80756 -3.09845 0.27047 0.85081 2.16489 2.51072 3.08197 3.17768 3.39182 3.45747 3.47854 3.62299 3.74206 3.84611 4.04000 4.35651 4.50834 4.54614 4.82913 5.00608 5.12012 5.30400 5.34695 5.45702 5.47497 5.49565 5.50007 5.57331 5.59914 5.71152 5.95539 5.98710 6.01864 6.08483 6.20806 6.37738 6.45696 6.58201 6.60685 6.63983 6.73836 6.98131 7.06643 7.25435 7.67407 7.72899 8.04666 8.36616 8.71042 9.48540 10.04294 10.40295 11.41085 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.002120 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.628589 B =13204.729161 C =13931.536795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.117 3.883 6 N -0.715 5.715 7 C 0.514 3.486 8 O -0.537 6.537 9 C -0.064 4.064 10 C 0.089 3.911 11 C -0.082 4.082 12 N -0.352 5.352 13 C 0.019 3.981 14 C 0.080 3.920 15 F -0.124 7.124 16 C -0.144 4.144 17 C -0.034 4.034 18 C 0.204 3.796 19 N -0.444 5.444 20 N -0.721 5.721 21 C -0.235 4.235 22 H 0.073 0.927 23 C -0.012 4.012 24 N -0.928 5.928 25 Si 0.902 3.098 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.410 0.590 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.187 0.813 40 H 0.172 0.828 41 H 0.154 0.846 42 H 0.163 0.837 43 H 0.385 0.615 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.185 4.707 -10.739 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.007 4.007 6 N -0.367 5.367 7 C 0.299 3.701 8 O -0.414 6.414 9 C -0.105 4.105 10 C -0.045 4.045 11 C -0.214 4.214 12 N -0.025 5.025 13 C -0.105 4.105 14 C 0.058 3.942 15 F -0.103 7.103 16 C -0.168 4.168 17 C -0.054 4.054 18 C -0.039 4.039 19 N -0.163 5.163 20 N -0.364 5.364 21 C -0.366 4.366 22 H 0.091 0.909 23 C -0.209 4.209 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.246 0.754 37 H 0.127 0.873 38 H 0.133 0.867 39 H 0.204 0.796 40 H 0.189 0.811 41 H 0.172 0.828 42 H 0.180 0.820 43 H 0.220 0.780 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.324 3.636 -10.317 22.206 hybrid contribution -0.664 1.430 -0.311 1.607 sum 18.660 5.066 -10.628 22.064 Atomic orbital electron populations 1.21769 0.95778 0.99593 1.03211 1.22072 0.96904 0.98520 1.00010 1.20562 0.90073 0.92700 0.91360 0.92909 1.21613 0.95395 0.82829 1.00892 1.45929 1.06930 1.10699 1.73149 1.20176 0.82462 0.90472 0.77027 1.90704 1.55877 1.46102 1.48673 1.20044 0.88153 0.96523 1.05809 1.20187 0.95238 0.94986 0.94085 1.22400 0.79921 1.10595 1.08446 1.42446 1.05611 1.29270 1.25149 1.21144 0.83740 1.03615 1.02005 1.16586 0.81604 0.99331 0.96725 1.91549 1.47879 1.88000 1.82836 1.21038 1.00361 0.98589 0.96767 1.20207 0.86782 0.98775 0.99604 1.21053 0.95293 0.95625 0.91896 1.70731 0.96661 1.22660 1.26223 1.42471 1.16745 1.65807 1.11331 1.19246 0.91951 1.27491 0.97960 0.90888 1.24737 0.98005 1.01690 0.96430 1.69678 1.35064 1.48967 1.03949 0.86201 0.84195 0.78861 0.77421 1.20595 1.21991 1.21971 0.94923 0.89681 0.94151 0.93904 0.92531 0.92136 0.91967 0.75426 0.87295 0.86709 0.79591 0.81111 0.82838 0.81963 0.78040 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.18 37.15 0.34 -2.26 16 2 C -0.13 -2.33 5.61 -26.73 -0.15 -2.48 16 3 C 0.16 3.00 2.59 -67.93 -0.18 2.82 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.12 2.01 5.23 -4.04 -0.02 1.99 16 6 N -0.71 -11.66 5.39 -60.30 -0.32 -11.99 16 7 C 0.51 8.53 7.82 -10.98 -0.09 8.44 16 8 O -0.54 -10.92 15.57 5.55 0.09 -10.83 16 9 C -0.06 -0.82 6.26 -29.03 -0.18 -1.00 16 10 C 0.09 1.25 5.84 -82.98 -0.48 0.76 16 11 C -0.08 -0.90 11.63 -16.44 -0.19 -1.10 16 12 N -0.35 -3.95 2.95 -62.59 -0.18 -4.13 16 13 C 0.02 0.16 10.92 -16.53 -0.18 -0.02 16 14 C 0.08 0.66 7.25 -39.79 -0.29 0.37 16 15 F -0.12 -1.00 17.26 2.25 0.04 -0.96 16 16 C -0.14 -1.10 10.05 -39.48 -0.40 -1.50 16 17 C -0.03 -0.33 10.10 -39.37 -0.40 -0.73 16 18 C 0.20 2.71 7.81 -156.05 -1.22 1.49 16 19 N -0.44 -7.19 10.69 -9.01 -0.10 -7.29 16 20 N -0.72 -16.25 4.51 -53.42 -0.24 -16.49 16 21 C -0.24 -5.89 7.75 -15.06 -0.12 -6.01 16 22 H 0.07 1.79 7.32 -52.49 -0.38 1.41 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 25 Si 0.90 21.30 29.55 -169.99 -5.02 16.27 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.79 5.99 -51.93 -0.31 1.47 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.41 6.56 8.14 -40.82 -0.33 6.22 16 37 H 0.11 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 43 H 0.39 9.60 7.80 -40.82 -0.32 9.28 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -33.30 376.80 -8.96 -42.26 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.97 Total: 12.97 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -3.64 Total: 0.35 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -0.12 Total: -65.74 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.30 -8.96 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318554819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.992 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds