Wall clock time and date at job start Tue Mar 31 2020 17:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46892 * 305.00508 * 3 2 1 5 5 C 1.52996 * 109.47530 * 184.99714 * 3 2 1 6 6 N 1.46498 * 109.47059 * 184.99929 * 5 3 2 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 3 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 C 1.50701 * 109.47355 * 180.02562 * 9 7 6 11 11 C 1.35125 * 125.68723 * 124.99936 * 10 9 7 12 12 N 1.36811 * 107.18285 * 179.97438 * 11 10 9 13 13 C 1.36609 * 132.54442 * 180.02562 * 12 11 10 14 14 C 1.35134 * 120.57438 * 179.97438 * 13 12 11 15 15 F 1.35097 * 119.87694 * 180.02562 * 14 13 12 16 16 C 1.40615 * 120.24649 * 0.03491 * 14 13 12 17 17 C 1.36017 * 119.68661 * 359.97438 * 16 14 13 18 18 C 1.37032 * 107.01628 * 359.97438 * 12 11 10 19 19 N 1.32611 * 108.02964 * 359.75996 * 18 12 11 20 20 N 1.46506 * 109.46609 * 64.99913 * 3 2 1 21 21 C 1.36937 * 119.99934 * 274.99832 * 20 3 2 22 22 H 1.07998 * 120.00035 * 0.02562 * 21 20 3 23 23 C 1.38810 * 120.00229 * 180.02562 * 21 20 3 24 24 N 1.31626 * 119.99636 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00308 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47134 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47520 * 120.00104 * 25 23 21 28 28 H 1.48501 * 109.47007 * 240.00143 * 25 23 21 29 29 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47382 * 299.99589 * 1 2 3 31 31 H 1.09003 * 109.47243 * 60.00250 * 1 2 3 32 32 H 1.09001 * 109.47619 * 240.00089 * 2 1 3 33 33 H 1.09003 * 109.47243 * 119.99750 * 2 1 3 34 34 H 1.09004 * 109.47066 * 65.00196 * 5 3 2 35 35 H 1.08994 * 109.46974 * 305.00344 * 5 3 2 36 36 H 0.97001 * 120.00384 * 0.02562 * 6 5 3 37 37 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 38 38 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 39 39 H 1.07997 * 126.41288 * 0.02562 * 11 10 9 40 40 H 1.07991 * 119.71331 * 359.97438 * 13 12 11 41 41 H 1.07996 * 120.15681 * 179.97438 * 16 14 13 42 42 H 1.08004 * 120.31052 * 180.02562 * 17 16 14 43 43 H 0.97000 * 120.00390 * 95.00648 * 20 3 2 44 44 H 0.97001 * 119.99765 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1256 6 7 4.0629 2.8169 -0.0059 7 6 5.3860 3.0624 -0.0806 8 8 6.1639 2.1478 -0.2521 9 6 5.8991 4.4735 0.0488 10 6 7.4014 4.4748 -0.0701 11 6 8.1221 5.2077 -0.9472 12 7 9.4412 4.9195 -0.7268 13 6 10.5936 5.3623 -1.3116 14 6 11.7954 4.9067 -0.8940 15 9 12.9262 5.3545 -1.4821 16 6 11.8732 3.9682 0.1502 17 6 10.7322 3.5202 0.7397 18 6 9.4870 4.0062 0.2938 19 7 8.2425 3.7572 0.6779 20 7 1.6524 2.0974 1.2519 21 6 0.4155 2.6734 1.3688 22 1 -0.2743 2.6446 0.5384 23 6 0.0484 3.2944 2.5548 24 7 0.8890 3.3291 3.5671 25 14 -1.6390 4.0795 2.7146 26 1 -2.3886 3.9046 1.4446 27 1 -2.3840 3.4305 3.8231 28 1 -1.4856 5.5282 3.0027 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0378 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4409 3.5484 0.1316 37 1 5.4717 5.0895 -0.7424 38 1 5.6107 4.8774 1.0193 39 1 7.7302 5.8934 -1.6838 40 1 10.5439 6.0825 -2.1147 41 1 12.8344 3.6048 0.4825 42 1 10.7803 2.7998 1.5429 43 1 2.2718 2.1232 1.9979 44 1 0.6323 3.7628 4.3959 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318554819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:54 Heat of formation + Delta-G solvation = -3.438849 kcal Electronic energy + Delta-G solvation = -27477.976475 eV Core-core repulsion = 23345.631978 eV Total energy + Delta-G solvation = -4132.344497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 19.41 seconds Orbital eigenvalues (eV) -50.08911 -43.85266 -40.58743 -38.43701 -37.97684 -35.13487 -34.76642 -34.11161 -32.84300 -31.46555 -30.19292 -29.71294 -28.34537 -25.58303 -24.71703 -23.93284 -23.79949 -22.11605 -21.57378 -20.85281 -19.41805 -19.14733 -18.66793 -17.94754 -17.39908 -17.18809 -17.01451 -16.68327 -16.34445 -16.12463 -16.06190 -15.72107 -15.49350 -15.14624 -14.84143 -14.58450 -14.48447 -14.42820 -14.08772 -13.85521 -13.78974 -13.13337 -12.94376 -12.77520 -12.72075 -12.64532 -12.35385 -12.30759 -12.05553 -12.04137 -11.83898 -11.59005 -11.31138 -11.11253 -10.92686 -10.73337 -9.91228 -9.63347 -8.94544 -8.93772 -7.84096 -5.11251 -0.41386 0.10919 1.42328 1.51480 1.53911 1.61621 1.67258 1.79542 2.31420 2.54256 2.63036 2.93150 3.11000 3.36173 3.49758 3.75020 3.81286 3.92515 3.99468 4.01786 4.09524 4.32514 4.42213 4.45738 4.51053 4.58701 4.59426 4.67846 4.79846 4.80364 4.83333 4.90803 4.92788 5.12882 5.16554 5.23554 5.39807 5.51793 5.53804 5.63697 5.66756 5.74281 5.98972 6.35933 6.72881 6.87040 7.40923 7.43689 8.15725 8.40801 9.39046 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020246 B = 0.002120 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.628589 B =13204.729161 C =13931.536795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.063 0.937 5 C 0.126 3.874 6 N -0.712 5.712 7 C 0.511 3.489 8 O -0.578 6.578 9 C -0.056 4.056 10 C 0.052 3.948 11 C -0.070 4.070 12 N -0.356 5.356 13 C 0.020 3.980 14 C 0.077 3.923 15 F -0.120 7.120 16 C -0.121 4.121 17 C -0.060 4.060 18 C 0.183 3.817 19 N -0.504 5.504 20 N -0.727 5.727 21 C -0.211 4.211 22 H 0.082 0.918 23 C -0.075 4.075 24 N -0.969 5.969 25 Si 0.959 3.041 26 H -0.265 1.265 27 H -0.305 1.305 28 H -0.298 1.298 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.412 0.588 37 H 0.150 0.850 38 H 0.114 0.886 39 H 0.228 0.772 40 H 0.205 0.795 41 H 0.185 0.815 42 H 0.170 0.830 43 H 0.372 0.628 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.919 5.664 -13.396 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.058 3.942 4 H 0.080 0.920 5 C 0.001 3.999 6 N -0.364 5.364 7 C 0.298 3.702 8 O -0.458 6.458 9 C -0.096 4.096 10 C -0.081 4.081 11 C -0.201 4.201 12 N -0.028 5.028 13 C -0.103 4.103 14 C 0.054 3.946 15 F -0.099 7.099 16 C -0.145 4.145 17 C -0.080 4.080 18 C -0.060 4.060 19 N -0.224 5.224 20 N -0.368 5.368 21 C -0.343 4.343 22 H 0.100 0.900 23 C -0.267 4.267 24 N -0.620 5.620 25 Si 0.790 3.210 26 H -0.189 1.189 27 H -0.233 1.233 28 H -0.226 1.226 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.249 0.751 37 H 0.168 0.832 38 H 0.132 0.868 39 H 0.244 0.756 40 H 0.222 0.778 41 H 0.202 0.798 42 H 0.188 0.812 43 H 0.203 0.797 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 20.038 4.591 -13.035 24.342 hybrid contribution -0.746 1.069 0.403 1.364 sum 19.292 5.660 -12.632 23.745 Atomic orbital electron populations 1.21694 0.95823 1.00567 1.01882 1.22004 0.96746 0.97589 1.00838 1.20702 0.90830 0.93120 0.89587 0.91950 1.21467 0.94317 0.83298 1.00836 1.45930 1.07180 1.10349 1.72941 1.20877 0.81881 0.91819 0.75658 1.90679 1.56730 1.47788 1.50560 1.20079 0.88128 0.94149 1.07267 1.20475 0.95636 0.96464 0.95523 1.22932 0.79525 1.09856 1.07809 1.42597 1.06476 1.28913 1.24835 1.21679 0.82893 1.03581 1.02182 1.16692 0.81773 0.99336 0.96773 1.91568 1.47622 1.87937 1.82754 1.21371 1.00871 0.96922 0.95304 1.20407 0.86405 1.00182 1.00983 1.21464 0.95451 0.96378 0.92712 1.70615 0.98418 1.24937 1.28468 1.42598 1.15802 1.66019 1.12332 1.19541 0.92404 1.24932 0.97453 0.90035 1.25385 1.00945 1.03691 0.96713 1.69828 1.36767 1.51118 1.04323 0.85268 0.80937 0.77409 0.77351 1.18923 1.23306 1.22565 0.92970 0.93235 0.93003 0.90816 0.93942 0.90671 0.94067 0.75131 0.83203 0.86781 0.75554 0.77794 0.79815 0.81209 0.79659 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.18 71.98 0.66 -4.14 16 2 C -0.13 -4.34 5.61 30.59 0.17 -4.17 16 3 C 0.17 5.92 2.59 44.99 0.12 6.04 16 4 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 5 C 0.13 4.27 5.23 86.38 0.45 4.72 16 6 N -0.71 -23.15 5.39 -463.07 -2.49 -25.65 16 7 C 0.51 17.10 7.82 87.66 0.69 17.79 16 8 O -0.58 -24.17 15.57 -3.04 -0.05 -24.22 16 9 C -0.06 -1.39 6.26 29.10 0.18 -1.21 16 10 C 0.05 1.44 5.84 41.59 0.24 1.69 16 11 C -0.07 -1.42 11.63 83.20 0.97 -0.45 16 12 N -0.36 -7.49 2.95 -351.94 -1.04 -8.53 16 13 C 0.02 0.28 10.92 83.23 0.91 1.19 16 14 C 0.08 1.07 7.25 22.13 0.16 1.23 16 15 F -0.12 -1.60 17.26 44.97 0.78 -0.82 16 16 C -0.12 -1.63 10.05 22.33 0.22 -1.41 16 17 C -0.06 -1.16 10.10 22.41 0.23 -0.93 16 18 C 0.18 4.92 7.81 134.10 1.05 5.96 16 19 N -0.50 -16.98 10.69 -182.42 -1.95 -18.93 16 20 N -0.73 -32.81 4.51 -322.93 -1.46 -34.26 16 21 C -0.21 -10.49 7.75 84.03 0.65 -9.84 16 22 H 0.08 3.87 7.32 -2.91 -0.02 3.85 16 23 C -0.08 -4.05 5.50 84.86 0.47 -3.59 16 24 N -0.97 -56.85 13.06 21.65 0.28 -56.56 16 25 Si 0.96 44.13 29.55 68.60 2.03 46.16 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 28 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.05 2.02 5.99 -2.39 -0.01 2.01 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.41 13.02 8.14 -92.71 -0.75 12.27 16 37 H 0.15 2.34 8.10 -2.39 -0.02 2.32 16 38 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.23 2.33 8.06 -2.91 -0.02 2.31 16 40 H 0.21 1.37 8.06 -2.92 -0.02 1.35 16 41 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 43 H 0.37 18.93 7.80 -92.71 -0.72 18.21 16 44 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -75.11 376.80 2.83 -72.28 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: -0.43 Total: 37.66 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 7.16 Total: 12.87 kcal Atomic # 7 Polarization: -137.28 SS G_CDS: -6.65 Total: -143.93 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.78 Total: -0.82 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -75.11 2.83 -72.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318554819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.839 kcal (2) G-P(sol) polarization free energy of solvation -75.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.41 seconds