Wall clock time and date at job start Tue Mar 31 2020 22:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48504 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47122 * 299.99339 * 3 2 1 6 6 H 1.48498 * 109.47059 * 59.99726 * 3 2 1 7 7 C 1.38815 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00011 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00236 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00383 * 174.37132 * 9 7 2 11 11 C 1.53004 * 110.01268 * 61.53828 * 10 9 7 12 12 N 1.46504 * 109.46898 * 55.14323 * 11 10 9 13 13 C 1.34778 * 119.99558 * 175.56917 * 12 11 10 14 14 O 1.21279 * 119.99956 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99431 * 180.27538 * 13 12 11 16 16 C 1.53003 * 112.85232 * 50.06299 * 15 13 12 17 17 F 1.39893 * 109.47134 * 69.66035 * 16 15 13 18 18 F 1.39898 * 109.47196 * 189.66590 * 16 15 13 19 19 F 1.39905 * 109.46457 * 309.66177 * 16 15 13 20 20 C 1.53776 * 113.61526 * 278.85800 * 15 13 12 21 21 C 1.54053 * 86.98909 * 270.84153 * 20 15 13 22 22 C 1.53785 * 87.07753 * 334.56882 * 21 20 15 23 23 C 1.54267 * 110.03490 * 182.93044 * 10 9 7 24 24 C 1.54969 * 104.15886 * 95.75723 * 23 10 9 25 25 C 1.54884 * 102.77784 * 37.88685 * 24 23 10 26 26 C 1.53879 * 110.03052 * 300.15093 * 10 9 7 27 27 H 0.96996 * 119.99431 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99776 * 354.38092 * 9 7 2 29 29 H 1.08994 * 109.47058 * 295.14380 * 11 10 9 30 30 H 1.08996 * 109.46959 * 175.14285 * 11 10 9 31 31 H 0.97001 * 119.99774 * 355.56841 * 12 11 10 32 32 H 1.08998 * 113.61544 * 25.44163 * 20 15 13 33 33 H 1.09009 * 113.61323 * 156.33829 * 20 15 13 34 34 H 1.09000 * 113.61916 * 220.02369 * 21 20 15 35 35 H 1.09001 * 113.68814 * 89.12406 * 21 20 15 36 36 H 1.09003 * 113.61197 * 270.88125 * 22 21 20 37 37 H 1.08990 * 113.61290 * 139.97378 * 22 21 20 38 38 H 1.08998 * 110.48238 * 214.40670 * 23 10 9 39 39 H 1.08999 * 110.48535 * 337.04802 * 23 10 9 40 40 H 1.08998 * 110.71402 * 279.57501 * 24 23 10 41 41 H 1.08994 * 110.76150 * 156.22598 * 24 23 10 42 42 H 1.08995 * 110.48603 * 203.40429 * 25 24 23 43 43 H 1.08998 * 110.48880 * 80.76208 * 25 24 23 44 44 H 1.09002 * 110.03373 * 359.94719 * 26 10 9 45 45 H 1.08998 * 110.02872 * 121.38109 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0525 -3.6539 -0.1223 11 6 3.0122 -3.8242 1.0572 12 7 2.2670 -3.7100 2.3134 13 6 2.8929 -3.9159 3.4892 14 8 4.0729 -4.1951 3.5072 15 6 2.1249 -3.8045 4.7810 16 6 0.8267 -4.6142 4.7722 17 9 1.1289 -5.9800 4.7880 18 9 0.0680 -4.2913 5.9023 19 9 0.0963 -4.3115 3.6180 20 6 1.9449 -2.3570 5.2678 21 6 3.2812 -2.5281 6.0150 22 6 2.9878 -4.0376 6.0325 23 6 1.0580 -4.8323 -0.1687 24 6 0.8673 -5.1079 -1.6817 25 6 2.2891 -4.8819 -2.2530 26 6 2.8348 -3.6850 -1.4470 27 1 -0.4849 0.8401 -0.0004 28 1 0.3590 -2.3900 0.0842 29 1 3.7779 -3.0496 1.0173 30 1 3.4844 -4.8050 1.0027 31 1 1.3233 -3.4863 2.2988 32 1 1.9823 -1.6190 4.4666 33 1 1.0890 -2.2220 5.9293 34 1 3.2890 -2.0733 7.0056 35 1 4.1536 -2.2598 5.4191 36 1 2.4165 -4.3612 6.9026 37 1 3.8665 -4.6553 5.8482 38 1 1.4788 -5.7064 0.3281 39 1 0.1107 -4.5503 0.2908 40 1 0.1597 -4.4018 -2.1161 41 1 0.5423 -6.1347 -1.8494 42 1 2.2394 -4.6365 -3.3138 43 1 2.9092 -5.7639 -2.0931 44 1 2.6728 -2.7587 -1.9982 45 1 3.8980 -3.8214 -1.2496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319362226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:02 Heat of formation + Delta-G solvation = -164.477806 kcal Electronic energy + Delta-G solvation = -31727.704131 eV Core-core repulsion = 27137.687275 eV Total energy + Delta-G solvation = -4590.016856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.19884 -47.71182 -47.64328 -40.47877 -38.63615 -37.14540 -34.20406 -33.36236 -30.75832 -29.12837 -28.30421 -27.66240 -25.93324 -24.81684 -23.62644 -23.08272 -21.47774 -20.30383 -19.55905 -18.67591 -18.43257 -18.33942 -17.99275 -17.08384 -16.23583 -15.85123 -15.32076 -15.01446 -14.69959 -14.58556 -14.45981 -14.28078 -14.08653 -14.03541 -13.93832 -13.79085 -13.63986 -13.26219 -13.16440 -12.76857 -12.57944 -12.49649 -12.32829 -11.94059 -11.56921 -11.09456 -11.05133 -10.87314 -10.75552 -10.69034 -10.66955 -10.58915 -10.51689 -10.37252 -10.09560 -9.86633 -9.70672 -9.65681 -8.97034 -8.58769 -7.05668 -5.84342 -3.14042 2.35749 2.88384 3.24515 3.37337 3.45403 3.45967 3.63748 3.80015 3.99741 4.39266 4.52341 4.54782 4.59831 4.81006 5.08607 5.12419 5.22834 5.25180 5.42001 5.53978 5.57629 5.64323 5.73247 5.78625 5.82037 5.88554 5.93463 5.96659 6.10053 6.12773 6.18106 6.26209 6.29334 6.40181 6.55177 6.57286 6.72591 6.79510 6.88791 7.09384 7.68318 7.86881 8.33941 8.44034 9.45663 9.99901 10.35836 11.37451 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010260 B = 0.005318 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.425546 B = 5263.678562 C = 6566.307769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.188 3.812 11 C 0.117 3.883 12 N -0.691 5.691 13 C 0.536 3.464 14 O -0.534 6.534 15 C -0.167 4.167 16 C 0.469 3.531 17 F -0.178 7.178 18 F -0.176 7.176 19 F -0.172 7.172 20 C -0.118 4.118 21 C -0.131 4.131 22 C -0.107 4.107 23 C -0.124 4.124 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.129 4.129 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.410 0.590 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.872 -10.238 8.668 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.318 3.682 14 O -0.412 6.412 15 C -0.171 4.171 16 C 0.414 3.586 17 F -0.159 7.159 18 F -0.158 7.158 19 F -0.154 7.154 20 C -0.156 4.156 21 C -0.169 4.169 22 C -0.145 4.145 23 C -0.162 4.162 24 C -0.156 4.156 25 C -0.158 4.158 26 C -0.169 4.169 27 H 0.064 0.936 28 H 0.219 0.781 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.249 0.751 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.767 -10.293 8.617 13.706 hybrid contribution -0.638 1.008 -0.084 1.195 sum 2.130 -9.285 8.533 12.789 Atomic orbital electron populations 1.69665 1.04994 1.25536 1.57401 1.24711 0.95411 0.97504 1.02816 0.86226 0.78962 0.84481 0.77184 1.20584 1.21900 1.21966 1.19137 0.91018 0.83777 1.42635 0.91187 1.42566 1.06125 0.99442 1.87220 1.20460 0.91038 0.87427 0.91509 1.22048 0.95362 1.00215 0.83302 1.46045 1.15156 1.68013 1.05101 1.19026 0.87267 0.78238 0.83663 1.90673 1.15054 1.48702 1.86792 1.23642 0.93275 1.00837 0.99393 1.20094 0.86185 0.78594 0.73713 1.93195 1.93139 1.33436 1.96153 1.93158 1.78105 1.92456 1.52041 1.93127 1.79651 1.92783 1.49805 1.23101 0.99990 0.91300 1.01190 1.22832 0.97523 0.95123 1.01379 1.22858 0.99569 0.99070 0.92955 1.22602 0.99472 0.97541 0.96579 1.22422 0.97326 1.00232 0.95647 1.22306 0.96264 0.98114 0.99134 1.22653 0.98407 0.98928 0.96889 0.93573 0.78094 0.91562 0.92419 0.75071 0.88697 0.87753 0.90111 0.88880 0.88609 0.88535 0.91858 0.91492 0.91224 0.92572 0.92404 0.92582 0.89831 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.22 13.07 55.49 0.73 -25.49 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 7 C -0.23 -5.91 8.52 -15.06 -0.13 -6.04 16 8 H 0.07 1.78 7.27 -52.49 -0.38 1.40 16 9 N -0.71 -15.81 4.52 -46.19 -0.21 -16.02 16 10 C 0.19 3.41 0.68 -130.69 -0.09 3.32 16 11 C 0.12 2.11 4.04 -4.04 -0.02 2.10 16 12 N -0.69 -12.18 4.93 -60.29 -0.30 -12.48 16 13 C 0.54 9.13 6.61 -10.99 -0.07 9.06 16 14 O -0.53 -10.26 15.83 5.56 0.09 -10.17 16 15 C -0.17 -2.31 0.86 -154.84 -0.13 -2.44 16 16 C 0.47 6.45 2.64 37.16 0.10 6.55 16 17 F -0.18 -2.50 17.18 2.25 0.04 -2.46 16 18 F -0.18 -2.23 15.74 2.25 0.04 -2.19 16 19 F -0.17 -2.60 14.54 2.25 0.03 -2.57 16 20 C -0.12 -1.48 7.12 -25.78 -0.18 -1.67 16 21 C -0.13 -1.47 7.76 -25.77 -0.20 -1.67 16 22 C -0.11 -1.23 6.83 -25.91 -0.18 -1.41 16 23 C -0.12 -1.96 5.73 -25.03 -0.14 -2.11 16 24 C -0.12 -1.74 6.91 -24.70 -0.17 -1.91 16 25 C -0.12 -1.74 6.83 -25.07 -0.17 -1.91 16 26 C -0.13 -2.22 5.93 -25.61 -0.15 -2.37 16 27 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.38 9.25 7.44 -40.82 -0.30 8.95 16 29 H 0.07 1.33 7.46 -51.93 -0.39 0.95 16 30 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 31 H 0.41 7.35 5.57 -40.82 -0.23 7.12 16 32 H 0.09 1.36 8.09 -51.93 -0.42 0.94 16 33 H 0.10 1.13 7.18 -51.92 -0.37 0.76 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.10 0.91 7.83 -51.93 -0.41 0.50 16 37 H 0.10 1.20 7.41 -51.93 -0.39 0.81 16 38 H 0.06 0.93 7.79 -51.93 -0.40 0.53 16 39 H 0.07 1.10 7.72 -51.93 -0.40 0.70 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 1.66 7.36 -51.93 -0.38 1.28 16 45 H 0.05 0.84 7.67 -51.93 -0.40 0.44 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -28.09 366.65 -7.28 -35.37 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -6.56 Total: 14.77 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.63 Total: -0.82 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.22 Total: -53.99 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.11 Total: -7.22 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.09 -7.28 -35.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319362226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.110 kcal (2) G-P(sol) polarization free energy of solvation -28.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds