Wall clock time and date at job start Tue Mar 31 2020 22:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48504 * 109.46979 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47122 * 299.99339 * 3 2 1 6 6 H 1.48498 * 109.47059 * 59.99726 * 3 2 1 7 7 C 1.38815 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00011 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00236 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00383 * 174.37132 * 9 7 2 11 11 C 1.53004 * 110.01268 * 61.53828 * 10 9 7 12 12 N 1.46504 * 109.46898 * 55.14323 * 11 10 9 13 13 C 1.34778 * 119.99558 * 175.56917 * 12 11 10 14 14 O 1.21279 * 119.99956 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99431 * 180.27538 * 13 12 11 16 16 C 1.53003 * 112.85232 * 50.06299 * 15 13 12 17 17 F 1.39893 * 109.47134 * 69.66035 * 16 15 13 18 18 F 1.39898 * 109.47196 * 189.66590 * 16 15 13 19 19 F 1.39905 * 109.46457 * 309.66177 * 16 15 13 20 20 C 1.53776 * 113.61526 * 278.85800 * 15 13 12 21 21 C 1.54053 * 86.98909 * 270.84153 * 20 15 13 22 22 C 1.53785 * 87.07753 * 334.56882 * 21 20 15 23 23 C 1.54267 * 110.03490 * 182.93044 * 10 9 7 24 24 C 1.54969 * 104.15886 * 95.75723 * 23 10 9 25 25 C 1.54884 * 102.77784 * 37.88685 * 24 23 10 26 26 C 1.53879 * 110.03052 * 300.15093 * 10 9 7 27 27 H 0.96996 * 119.99431 * 0.02562 * 1 2 3 28 28 H 0.97001 * 119.99776 * 354.38092 * 9 7 2 29 29 H 1.08994 * 109.47058 * 295.14380 * 11 10 9 30 30 H 1.08996 * 109.46959 * 175.14285 * 11 10 9 31 31 H 0.97001 * 119.99774 * 355.56841 * 12 11 10 32 32 H 1.08998 * 113.61544 * 25.44163 * 20 15 13 33 33 H 1.09009 * 113.61323 * 156.33829 * 20 15 13 34 34 H 1.09000 * 113.61916 * 220.02369 * 21 20 15 35 35 H 1.09001 * 113.68814 * 89.12406 * 21 20 15 36 36 H 1.09003 * 113.61197 * 270.88125 * 22 21 20 37 37 H 1.08990 * 113.61290 * 139.97378 * 22 21 20 38 38 H 1.08998 * 110.48238 * 214.40670 * 23 10 9 39 39 H 1.08999 * 110.48535 * 337.04802 * 23 10 9 40 40 H 1.08998 * 110.71402 * 279.57501 * 24 23 10 41 41 H 1.08994 * 110.76150 * 156.22598 * 24 23 10 42 42 H 1.08995 * 110.48603 * 203.40429 * 25 24 23 43 43 H 1.08998 * 110.48880 * 80.76208 * 25 24 23 44 44 H 1.09002 * 110.03373 * 359.94719 * 26 10 9 45 45 H 1.08998 * 110.02872 * 121.38109 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0525 -3.6539 -0.1223 11 6 3.0122 -3.8242 1.0572 12 7 2.2670 -3.7100 2.3134 13 6 2.8929 -3.9159 3.4892 14 8 4.0729 -4.1951 3.5072 15 6 2.1249 -3.8045 4.7810 16 6 0.8267 -4.6142 4.7722 17 9 1.1289 -5.9800 4.7880 18 9 0.0680 -4.2913 5.9023 19 9 0.0963 -4.3115 3.6180 20 6 1.9449 -2.3570 5.2678 21 6 3.2812 -2.5281 6.0150 22 6 2.9878 -4.0376 6.0325 23 6 1.0580 -4.8323 -0.1687 24 6 0.8673 -5.1079 -1.6817 25 6 2.2891 -4.8819 -2.2530 26 6 2.8348 -3.6850 -1.4470 27 1 -0.4849 0.8401 -0.0004 28 1 0.3590 -2.3900 0.0842 29 1 3.7779 -3.0496 1.0173 30 1 3.4844 -4.8050 1.0027 31 1 1.3233 -3.4863 2.2988 32 1 1.9823 -1.6190 4.4666 33 1 1.0890 -2.2220 5.9293 34 1 3.2890 -2.0733 7.0056 35 1 4.1536 -2.2598 5.4191 36 1 2.4165 -4.3612 6.9026 37 1 3.8665 -4.6553 5.8482 38 1 1.4788 -5.7064 0.3281 39 1 0.1107 -4.5503 0.2908 40 1 0.1597 -4.4018 -2.1161 41 1 0.5423 -6.1347 -1.8494 42 1 2.2394 -4.6365 -3.3138 43 1 2.9092 -5.7639 -2.0931 44 1 2.6728 -2.7587 -1.9982 45 1 3.8980 -3.8214 -1.2496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319362226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:01 Heat of formation + Delta-G solvation = -180.218695 kcal Electronic energy + Delta-G solvation = -31728.386707 eV Core-core repulsion = 27137.687275 eV Total energy + Delta-G solvation = -4590.699432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.30326 -48.82332 -48.74130 -41.72315 -40.02262 -38.39157 -35.64683 -35.16989 -32.47850 -30.41119 -29.63380 -29.10067 -26.92372 -26.32170 -25.21508 -24.39140 -22.70653 -21.54941 -20.82588 -20.02040 -19.55713 -19.49450 -19.24097 -18.92683 -17.52689 -17.24053 -16.79135 -16.26004 -16.13649 -15.88984 -15.73931 -15.56346 -15.39574 -15.18037 -15.14137 -15.00361 -14.90135 -14.84073 -14.44651 -14.12510 -13.85716 -13.58110 -13.45120 -13.31192 -13.25655 -12.89902 -12.64793 -12.24350 -12.10827 -12.06259 -11.87433 -11.81110 -11.75278 -11.66754 -11.55880 -11.45339 -11.33795 -11.06718 -10.88107 -10.06229 -8.97272 -7.90516 -5.17342 1.12155 1.43873 1.47176 1.53947 1.67897 1.97679 2.54534 2.56219 2.69452 2.89292 3.33252 3.39748 3.47241 3.59871 3.64337 3.72221 3.82533 3.93939 4.11578 4.22668 4.40589 4.53320 4.54324 4.61781 4.65951 4.71853 4.79014 4.82157 4.89012 4.94397 4.97211 4.99541 5.09669 5.18124 5.25742 5.26186 5.36552 5.40532 5.48905 5.61934 5.68715 6.32297 6.45027 7.03670 7.39360 8.11890 8.37250 9.31976 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010260 B = 0.005318 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.425546 B = 5263.678562 C = 6566.307769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.064 4.064 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.296 1.296 7 C -0.215 4.215 8 H 0.066 0.934 9 N -0.715 5.715 10 C 0.183 3.817 11 C 0.123 3.877 12 N -0.695 5.695 13 C 0.532 3.468 14 O -0.559 6.559 15 C -0.174 4.174 16 C 0.472 3.528 17 F -0.179 7.179 18 F -0.166 7.166 19 F -0.183 7.183 20 C -0.117 4.117 21 C -0.124 4.124 22 C -0.097 4.097 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.113 4.113 26 C -0.128 4.128 27 H 0.248 0.752 28 H 0.374 0.626 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.408 0.592 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 -11.703 9.676 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.257 4.257 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.224 1.224 7 C -0.347 4.347 8 H 0.084 0.916 9 N -0.356 5.356 10 C 0.092 3.908 11 C -0.003 4.003 12 N -0.347 5.347 13 C 0.316 3.684 14 O -0.438 6.438 15 C -0.178 4.178 16 C 0.418 3.582 17 F -0.160 7.160 18 F -0.147 7.147 19 F -0.164 7.164 20 C -0.154 4.154 21 C -0.162 4.162 22 C -0.135 4.135 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.150 4.150 26 C -0.168 4.168 27 H 0.057 0.943 28 H 0.207 0.793 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.248 0.752 32 H 0.088 0.912 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.142 0.858 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.168 -11.789 9.623 15.544 hybrid contribution -0.698 1.385 -0.391 1.600 sum 2.470 -10.404 9.232 14.127 Atomic orbital electron populations 1.69782 1.06013 1.25459 1.59816 1.25269 0.96063 0.99971 1.04390 0.85393 0.78223 0.81600 0.76488 1.19965 1.22502 1.22385 1.19285 0.90845 0.84846 1.39740 0.91632 1.42629 1.05661 1.00188 1.87073 1.20720 0.91578 0.86604 0.91908 1.21919 0.94758 0.99979 0.83652 1.46110 1.15016 1.68201 1.05366 1.19525 0.87205 0.77204 0.84441 1.90653 1.16178 1.49668 1.87313 1.23693 0.93519 1.02062 0.98549 1.20034 0.86044 0.78477 0.73670 1.93194 1.93142 1.33521 1.96152 1.93176 1.77810 1.92371 1.51355 1.93109 1.79897 1.92859 1.50534 1.23175 1.01781 0.89569 1.00923 1.22793 0.95783 0.95158 1.02427 1.22940 0.98992 0.99084 0.92464 1.22564 0.98338 0.96828 0.97878 1.22408 0.97091 1.01467 0.94240 1.22290 0.96216 0.97505 0.99019 1.22584 0.99012 0.99006 0.96244 0.94298 0.79261 0.94126 0.91048 0.75244 0.91167 0.85527 0.86961 0.90920 0.85774 0.89440 0.90150 0.92328 0.93013 0.89668 0.91607 0.90157 0.92981 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.50 13.07 21.65 0.28 -55.22 16 2 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 3 Si 0.95 45.20 29.55 68.60 2.03 47.23 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 7 C -0.22 -11.04 8.52 84.03 0.72 -10.32 16 8 H 0.07 3.39 7.27 -2.91 -0.02 3.37 16 9 N -0.72 -32.33 4.52 -300.05 -1.36 -33.69 16 10 C 0.18 6.57 0.68 4.33 0.00 6.58 16 11 C 0.12 4.44 4.04 86.38 0.35 4.79 16 12 N -0.70 -24.55 4.93 -463.06 -2.28 -26.83 16 13 C 0.53 18.01 6.61 87.66 0.58 18.59 16 14 O -0.56 -21.40 15.83 -3.03 -0.05 -21.44 16 15 C -0.17 -4.61 0.86 -52.40 -0.04 -4.65 16 16 C 0.47 12.28 2.64 71.98 0.19 12.46 16 17 F -0.18 -4.72 17.18 44.97 0.77 -3.94 16 18 F -0.17 -3.80 15.74 44.97 0.71 -3.09 16 19 F -0.18 -5.39 14.54 44.97 0.65 -4.73 16 20 C -0.12 -2.78 7.12 31.21 0.22 -2.56 16 21 C -0.12 -2.56 7.76 31.21 0.24 -2.32 16 22 C -0.10 -2.03 6.83 31.13 0.21 -1.82 16 23 C -0.12 -3.58 5.73 31.70 0.18 -3.40 16 24 C -0.11 -3.11 6.91 31.91 0.22 -2.89 16 25 C -0.11 -3.00 6.83 31.67 0.22 -2.78 16 26 C -0.13 -4.35 5.93 31.32 0.19 -4.16 16 27 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.37 18.45 7.44 -92.71 -0.69 17.76 16 29 H 0.04 1.66 7.46 -2.39 -0.02 1.65 16 30 H 0.07 2.38 8.04 -2.39 -0.02 2.36 16 31 H 0.41 14.76 5.57 -92.71 -0.52 14.24 16 32 H 0.07 2.03 8.09 -2.39 -0.02 2.01 16 33 H 0.13 2.44 7.18 -2.38 -0.02 2.43 16 34 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.12 1.91 7.83 -2.39 -0.02 1.89 16 37 H 0.09 2.03 7.41 -2.39 -0.02 2.01 16 38 H 0.08 2.18 7.79 -2.39 -0.02 2.16 16 39 H 0.06 1.89 7.72 -2.39 -0.02 1.87 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 2.09 7.36 -2.39 -0.02 2.07 16 45 H 0.06 1.90 7.67 -2.39 -0.02 1.89 16 Total: -1.00 -61.20 366.65 4.32 -56.88 By element: Atomic # 1 Polarization: 40.54 SS G_CDS: -0.18 Total: 40.36 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 3.74 Total: 4.48 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -3.36 Total: -115.74 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 9 Polarization: -13.90 SS G_CDS: 2.13 Total: -11.77 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -61.20 4.32 -56.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319362226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.341 kcal (2) G-P(sol) polarization free energy of solvation -61.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds