Wall clock time and date at job start Tue Mar 31 2020 21:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 119.99856 * 2 1 4 4 H 1.48504 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47240 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47407 * 60.00101 * 3 2 1 7 7 C 1.38806 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00160 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00034 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99950 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46705 * 180.02562 * 11 10 9 13 13 H 1.08992 * 110.91440 * 308.89820 * 12 11 10 14 14 C 1.55156 * 111.00226 * 72.80559 * 12 11 10 15 15 C 1.54321 * 102.93856 * 153.57431 * 14 12 11 16 16 N 1.47022 * 107.27605 * 337.80377 * 15 14 12 17 17 C 1.34770 * 125.65137 * 178.97635 * 16 15 14 18 18 O 1.21285 * 120.00135 * 178.12883 * 17 16 15 19 19 C 1.50700 * 120.00158 * 358.13319 * 17 16 15 20 20 C 1.53006 * 112.84701 * 284.84273 * 19 17 16 21 21 F 1.39907 * 109.46824 * 74.44367 * 20 19 17 22 22 F 1.39896 * 109.47319 * 194.43760 * 20 19 17 23 23 F 1.39892 * 109.47326 * 314.44627 * 20 19 17 24 24 C 1.53780 * 113.61544 * 153.65209 * 19 17 16 25 25 C 1.54050 * 86.98414 * 270.83223 * 24 19 17 26 26 C 1.53780 * 113.61553 * 56.03790 * 19 17 16 27 27 C 1.47426 * 108.69851 * 358.94182 * 16 15 14 28 28 H 0.97000 * 119.99881 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99816 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.46961 * 60.00113 * 10 9 7 31 31 H 1.09003 * 109.47054 * 300.00146 * 10 9 7 32 32 H 1.08999 * 109.47343 * 60.00199 * 11 10 9 33 33 H 1.09003 * 109.47266 * 299.99867 * 11 10 9 34 34 H 1.08999 * 110.72218 * 271.93226 * 14 12 11 35 35 H 1.08993 * 110.72266 * 35.21183 * 14 12 11 36 36 H 1.09005 * 109.88356 * 218.38589 * 15 14 12 37 37 H 1.08999 * 110.01620 * 97.29994 * 15 14 12 38 38 H 1.08999 * 113.61585 * 25.43155 * 24 19 17 39 39 H 1.09006 * 113.61333 * 156.33372 * 24 19 17 40 40 H 1.08995 * 113.62323 * 220.02205 * 25 24 19 41 41 H 1.09002 * 113.68309 * 89.12690 * 25 24 19 42 42 H 1.09000 * 113.61636 * 203.66410 * 26 19 17 43 43 H 1.08990 * 113.61447 * 334.48873 * 26 19 17 44 44 H 1.08997 * 110.36713 * 265.28567 * 27 16 15 45 45 H 1.09004 * 110.45775 * 143.01105 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 6 1.8288 -6.1448 0.0029 13 1 2.5770 -6.1624 -0.7895 14 6 2.4777 -6.4115 1.3867 15 6 2.5737 -7.9511 1.4324 16 7 1.5801 -8.4787 0.4859 17 6 1.3640 -9.7819 0.2190 18 8 0.4911 -10.1052 -0.5586 19 6 2.2069 -10.8377 0.8869 20 6 3.6154 -10.9342 0.2972 21 9 4.3781 -9.8442 0.7306 22 9 4.2182 -12.1231 0.7216 23 9 3.5380 -10.9232 -1.0995 24 6 1.5003 -12.1970 1.0198 25 6 0.9634 -11.6939 2.3732 26 6 2.1858 -10.7622 2.4227 27 6 0.8587 -7.3460 -0.1225 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 0.0016 30 1 2.6853 -3.7142 0.8911 31 1 2.6840 -3.7149 -0.8889 32 1 0.4367 -4.7622 -0.8875 33 1 0.4374 -4.7618 0.8925 34 1 3.4691 -5.9617 1.4410 35 1 1.8404 -6.0409 2.1895 36 1 2.3522 -8.3066 2.4388 37 1 3.5730 -8.2715 1.1379 38 1 0.7230 -12.3600 0.2733 39 1 2.1868 -13.0392 1.1083 40 1 0.9628 -12.4553 3.1532 41 1 0.0136 -11.1644 2.2980 42 1 3.0593 -11.2128 2.8940 43 1 1.9630 -9.7673 2.8080 44 1 -0.0639 -7.1471 0.4227 45 1 0.6423 -7.5510 -1.1710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326305058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:43 Heat of formation + Delta-G solvation = -149.267118 kcal Electronic energy + Delta-G solvation = -30099.669677 eV Core-core repulsion = 25510.312405 eV Total energy + Delta-G solvation = -4589.357271 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.59547 -48.13654 -48.00608 -41.18221 -38.85048 -37.42744 -35.21511 -33.08278 -31.02889 -29.70346 -29.38491 -27.56686 -26.32084 -24.73009 -23.73424 -23.24285 -21.75646 -21.07765 -20.24992 -19.39595 -18.90649 -18.67805 -18.60327 -17.13745 -16.74688 -16.44412 -15.72407 -15.46225 -15.11288 -14.83323 -14.71657 -14.63135 -14.41422 -14.26137 -14.13301 -13.91995 -13.80234 -13.63254 -13.29799 -13.14803 -13.04143 -12.93137 -12.85504 -12.65621 -12.09409 -11.71147 -11.56863 -11.38657 -11.17800 -11.10039 -10.97171 -10.81207 -10.66034 -10.48540 -10.33865 -10.26074 -9.99530 -9.70025 -8.90547 -8.87669 -6.92398 -5.77096 -3.05817 1.78853 2.42391 2.48808 3.16894 3.34700 3.42900 3.48357 3.49207 3.50770 3.83837 4.03599 4.09628 4.13816 4.41419 4.47811 4.57824 4.73612 4.74625 4.94574 5.00568 5.13801 5.22520 5.30043 5.35007 5.43299 5.46722 5.52378 5.58993 5.63842 5.68445 5.73310 5.80616 5.84503 6.00770 6.06709 6.22892 6.34115 6.36409 6.82471 6.86991 7.12264 7.68389 7.69870 8.42121 9.53066 10.11551 10.45677 11.46007 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.026160 B = 0.002262 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.067343 B =12376.268263 C =12706.186513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.115 4.115 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.126 4.126 15 C 0.068 3.932 16 N -0.606 5.606 17 C 0.556 3.444 18 O -0.517 6.517 19 C -0.164 4.164 20 C 0.473 3.527 21 F -0.171 7.171 22 F -0.174 7.174 23 F -0.174 7.174 24 C -0.112 4.112 25 C -0.134 4.134 26 C -0.127 4.127 27 C 0.110 3.890 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.019 0.981 31 H 0.017 0.983 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.798 -28.186 6.216 29.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.379 5.379 10 C 0.027 3.973 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.105 0.895 14 C -0.163 4.163 15 C -0.054 4.054 16 N -0.339 5.339 17 C 0.341 3.659 18 O -0.393 6.393 19 C -0.169 4.169 20 C 0.418 3.582 21 F -0.152 7.152 22 F -0.155 7.155 23 F -0.155 7.155 24 C -0.150 4.150 25 C -0.171 4.171 26 C -0.164 4.164 27 C -0.012 4.012 28 H 0.064 0.936 29 H 0.217 0.783 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.490 -28.318 5.761 29.415 hybrid contribution 0.547 1.029 -0.143 1.174 sum 6.037 -27.289 5.619 28.508 Atomic orbital electron populations 1.69671 1.05126 1.25542 1.57935 1.24752 0.95543 0.97742 1.03100 0.86114 0.78774 0.84101 0.77200 1.20552 1.21852 1.21861 1.19277 0.91055 0.84190 1.42442 0.91150 1.42386 1.05911 1.00104 1.89511 1.20619 0.93448 0.85422 0.97772 1.21671 0.98663 0.92425 1.02568 1.22354 0.97452 0.93953 0.97626 0.89533 1.22746 1.02841 0.92628 0.98120 1.22907 0.93708 0.95858 0.92930 1.48420 1.37976 1.04723 1.42731 1.18678 0.84102 0.81321 0.81796 1.90743 1.32921 1.80535 1.35056 1.23529 0.91533 1.01650 1.00155 1.19981 0.87916 0.73761 0.76509 1.93068 1.78555 1.54152 1.89470 1.93171 1.85221 1.47358 1.89796 1.93240 1.96521 1.96082 1.29691 1.23042 1.00432 0.92133 0.99346 1.22853 0.97725 0.99248 0.97306 1.23274 1.00907 1.03009 0.89216 1.22443 0.95391 0.84105 0.99261 0.93558 0.78316 0.96270 0.96500 0.91453 0.91508 0.89409 0.90001 0.90747 0.89052 0.88351 0.87692 0.89583 0.89234 0.87784 0.88569 0.90682 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.74 -18.57 5.60 -59.91 -0.34 -18.90 16 10 C 0.15 2.99 6.16 -4.04 -0.02 2.97 16 11 C -0.12 -1.72 4.84 -26.73 -0.13 -1.84 16 12 C -0.09 -1.12 3.01 -88.47 -0.27 -1.38 16 13 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.13 -1.26 5.90 -24.90 -0.15 -1.41 16 15 C 0.07 0.61 5.60 -3.07 -0.02 0.59 16 16 N -0.61 -6.70 3.32 -170.52 -0.57 -7.27 16 17 C 0.56 6.62 6.03 -10.99 -0.07 6.56 16 18 O -0.52 -7.84 16.36 5.55 0.09 -7.75 16 19 C -0.16 -1.46 0.53 -154.85 -0.08 -1.54 16 20 C 0.47 4.53 2.71 37.16 0.10 4.63 16 21 F -0.17 -1.61 13.58 2.25 0.03 -1.58 16 22 F -0.17 -1.50 15.79 2.25 0.04 -1.47 16 23 F -0.17 -2.06 16.80 2.25 0.04 -2.02 16 24 C -0.11 -0.82 7.02 -25.78 -0.18 -1.00 16 25 C -0.13 -0.79 7.81 -25.77 -0.20 -1.00 16 26 C -0.13 -0.78 6.41 -25.92 -0.17 -0.94 16 27 C 0.11 1.29 6.37 -2.53 -0.02 1.27 16 28 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.38 10.16 7.67 -40.82 -0.31 9.85 16 30 H 0.02 0.37 7.75 -51.93 -0.40 -0.03 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.00 7.97 -51.93 -0.41 0.58 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.82 7.91 -51.93 -0.41 0.41 16 36 H 0.07 0.53 5.48 -51.93 -0.28 0.25 16 37 H 0.09 0.81 4.75 -51.93 -0.25 0.57 16 38 H 0.10 0.86 7.40 -51.93 -0.38 0.47 16 39 H 0.10 0.61 7.06 -51.93 -0.37 0.25 16 40 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.49 7.99 -51.93 -0.42 0.07 16 43 H 0.10 0.57 5.02 -51.93 -0.26 0.31 16 44 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 45 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 LS Contribution 363.36 15.07 5.48 5.48 Total: -1.00 -32.69 363.36 -7.39 -40.08 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.42 Total: 4.16 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.44 Total: -0.49 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.18 Total: -53.80 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.09 Total: -7.75 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.10 Total: -5.06 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.69 -7.39 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326305058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.189 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds