Wall clock time and date at job start Tue Mar 31 2020 21:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 119.99856 * 2 1 4 4 H 1.48504 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47240 * 299.99745 * 3 2 1 6 6 H 1.48504 * 109.47407 * 60.00101 * 3 2 1 7 7 C 1.38806 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00160 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00034 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99950 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46897 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46705 * 180.02562 * 11 10 9 13 13 H 1.08992 * 110.91440 * 308.89820 * 12 11 10 14 14 C 1.55156 * 111.00226 * 72.80559 * 12 11 10 15 15 C 1.54321 * 102.93856 * 153.57431 * 14 12 11 16 16 N 1.47022 * 107.27605 * 337.80377 * 15 14 12 17 17 C 1.34770 * 125.65137 * 178.97635 * 16 15 14 18 18 O 1.21285 * 120.00135 * 178.12883 * 17 16 15 19 19 C 1.50700 * 120.00158 * 358.13319 * 17 16 15 20 20 C 1.53006 * 112.84701 * 284.84273 * 19 17 16 21 21 F 1.39907 * 109.46824 * 74.44367 * 20 19 17 22 22 F 1.39896 * 109.47319 * 194.43760 * 20 19 17 23 23 F 1.39892 * 109.47326 * 314.44627 * 20 19 17 24 24 C 1.53780 * 113.61544 * 153.65209 * 19 17 16 25 25 C 1.54050 * 86.98414 * 270.83223 * 24 19 17 26 26 C 1.53780 * 113.61553 * 56.03790 * 19 17 16 27 27 C 1.47426 * 108.69851 * 358.94182 * 16 15 14 28 28 H 0.97000 * 119.99881 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99816 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.46961 * 60.00113 * 10 9 7 31 31 H 1.09003 * 109.47054 * 300.00146 * 10 9 7 32 32 H 1.08999 * 109.47343 * 60.00199 * 11 10 9 33 33 H 1.09003 * 109.47266 * 299.99867 * 11 10 9 34 34 H 1.08999 * 110.72218 * 271.93226 * 14 12 11 35 35 H 1.08993 * 110.72266 * 35.21183 * 14 12 11 36 36 H 1.09005 * 109.88356 * 218.38589 * 15 14 12 37 37 H 1.08999 * 110.01620 * 97.29994 * 15 14 12 38 38 H 1.08999 * 113.61585 * 25.43155 * 24 19 17 39 39 H 1.09006 * 113.61333 * 156.33372 * 24 19 17 40 40 H 1.08995 * 113.62323 * 220.02205 * 25 24 19 41 41 H 1.09002 * 113.68309 * 89.12690 * 25 24 19 42 42 H 1.09000 * 113.61636 * 203.66410 * 26 19 17 43 43 H 1.08990 * 113.61447 * 334.48873 * 26 19 17 44 44 H 1.08997 * 110.36713 * 265.28567 * 27 16 15 45 45 H 1.09004 * 110.45775 * 143.01105 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 6 1.8288 -6.1448 0.0029 13 1 2.5770 -6.1624 -0.7895 14 6 2.4777 -6.4115 1.3867 15 6 2.5737 -7.9511 1.4324 16 7 1.5801 -8.4787 0.4859 17 6 1.3640 -9.7819 0.2190 18 8 0.4911 -10.1052 -0.5586 19 6 2.2069 -10.8377 0.8869 20 6 3.6154 -10.9342 0.2972 21 9 4.3781 -9.8442 0.7306 22 9 4.2182 -12.1231 0.7216 23 9 3.5380 -10.9232 -1.0995 24 6 1.5003 -12.1970 1.0198 25 6 0.9634 -11.6939 2.3732 26 6 2.1858 -10.7622 2.4227 27 6 0.8587 -7.3460 -0.1225 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 0.0016 30 1 2.6853 -3.7142 0.8911 31 1 2.6840 -3.7149 -0.8889 32 1 0.4367 -4.7622 -0.8875 33 1 0.4374 -4.7618 0.8925 34 1 3.4691 -5.9617 1.4410 35 1 1.8404 -6.0409 2.1895 36 1 2.3522 -8.3066 2.4388 37 1 3.5730 -8.2715 1.1379 38 1 0.7230 -12.3600 0.2733 39 1 2.1868 -13.0392 1.1083 40 1 0.9628 -12.4553 3.1532 41 1 0.0136 -11.1644 2.2980 42 1 3.0593 -11.2128 2.8940 43 1 1.9630 -9.7673 2.8080 44 1 -0.0639 -7.1471 0.4227 45 1 0.6423 -7.5510 -1.1710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326305058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:42 Heat of formation + Delta-G solvation = -169.090959 kcal Electronic energy + Delta-G solvation = -30100.529303 eV Core-core repulsion = 25510.312405 eV Total energy + Delta-G solvation = -4590.216898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.34467 -48.85825 -48.80111 -41.97721 -39.68091 -38.32596 -36.86955 -34.60234 -32.69196 -30.72362 -30.16342 -28.86647 -26.89782 -26.07356 -24.90010 -24.22661 -23.10930 -21.96234 -21.30826 -20.13247 -19.67072 -19.44099 -19.39204 -19.10190 -17.58328 -17.33450 -16.71816 -16.56283 -16.18488 -15.96923 -15.60989 -15.47596 -15.30719 -15.25466 -15.24238 -15.08056 -14.92486 -14.78588 -14.53074 -14.18072 -13.97824 -13.77136 -13.53624 -13.38982 -13.25315 -13.09101 -12.82788 -12.78198 -12.41412 -12.13078 -12.07046 -11.95046 -11.80367 -11.70964 -11.61264 -11.52887 -11.39930 -11.12214 -10.92231 -9.79895 -8.99175 -7.95276 -5.24111 0.95700 1.48047 1.48861 1.58768 1.59460 1.69950 2.52713 2.56446 2.63063 2.76170 3.16813 3.34396 3.38919 3.40797 3.54776 3.59118 3.63023 3.76350 4.13768 4.16650 4.23289 4.32452 4.44943 4.50196 4.56341 4.58287 4.66524 4.73571 4.75552 4.84005 4.84362 4.92378 4.96855 5.00126 5.02621 5.17095 5.22442 5.27343 5.39162 5.45021 5.50812 6.25029 6.27978 6.78138 7.33680 8.10893 8.32738 9.28770 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.026160 B = 0.002262 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.067343 B =12376.268263 C =12706.186513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.750 5.750 10 C 0.153 3.847 11 C -0.101 4.101 12 C -0.086 4.086 13 H 0.085 0.915 14 C -0.122 4.122 15 C 0.069 3.931 16 N -0.606 5.606 17 C 0.551 3.449 18 O -0.559 6.559 19 C -0.170 4.170 20 C 0.473 3.527 21 F -0.169 7.169 22 F -0.166 7.166 23 F -0.192 7.192 24 C -0.113 4.113 25 C -0.127 4.127 26 C -0.117 4.117 27 C 0.111 3.889 28 H 0.251 0.749 29 H 0.373 0.627 30 H 0.030 0.970 31 H 0.015 0.985 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.521 -29.209 7.986 31.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.393 5.393 10 C 0.027 3.973 11 C -0.139 4.139 12 C -0.106 4.106 13 H 0.103 0.897 14 C -0.160 4.160 15 C -0.051 4.051 16 N -0.338 5.338 17 C 0.338 3.662 18 O -0.438 6.438 19 C -0.174 4.174 20 C 0.418 3.582 21 F -0.151 7.151 22 F -0.147 7.147 23 F -0.173 7.173 24 C -0.151 4.151 25 C -0.164 4.164 26 C -0.153 4.153 27 C -0.012 4.012 28 H 0.060 0.940 29 H 0.205 0.795 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.145 0.855 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.268 -29.367 7.549 31.181 hybrid contribution 0.039 1.287 -0.727 1.479 sum 7.307 -28.080 6.822 29.806 Atomic orbital electron populations 1.69824 1.06667 1.26030 1.59701 1.25595 0.96430 1.01222 1.03804 0.85065 0.78280 0.79708 0.76669 1.18913 1.22160 1.21900 1.19690 0.91552 0.85395 1.40910 0.90549 1.42649 1.05726 1.01478 1.89443 1.20797 0.94102 0.84535 0.97834 1.21486 0.97786 0.92404 1.02231 1.22179 0.97115 0.92154 0.99120 0.89702 1.22756 1.03083 0.93500 0.96654 1.23043 0.93377 0.94960 0.93767 1.48506 1.38024 1.04467 1.42762 1.19193 0.83889 0.81885 0.81275 1.90718 1.34910 1.81242 1.36928 1.23596 0.90561 1.01427 1.01829 1.20091 0.88342 0.74034 0.75708 1.93066 1.78577 1.54112 1.89312 1.93184 1.85103 1.46880 1.89580 1.93207 1.96629 1.96189 1.31323 1.23133 1.00234 0.91964 0.99753 1.22823 0.97008 0.99605 0.97001 1.23373 1.01798 1.03536 0.86630 1.22327 0.95647 0.84497 0.98681 0.94002 0.79525 0.95174 0.96692 0.92404 0.91334 0.88626 0.89603 0.88127 0.88567 0.90342 0.85889 0.87070 0.90570 0.85476 0.88129 0.90428 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.02 29.55 68.60 2.03 48.04 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.24 -13.60 9.99 84.03 0.84 -12.76 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.75 -37.97 5.60 -343.45 -1.92 -39.90 16 10 C 0.15 5.82 6.16 86.38 0.53 6.35 16 11 C -0.10 -2.96 4.84 30.60 0.15 -2.81 16 12 C -0.09 -1.95 3.01 -9.40 -0.03 -1.98 16 13 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 14 C -0.12 -2.17 5.90 31.78 0.19 -1.99 16 15 C 0.07 1.07 5.60 86.73 0.49 1.56 16 16 N -0.61 -12.77 3.32 -811.79 -2.70 -15.47 16 17 C 0.55 12.87 6.03 87.66 0.53 13.39 16 18 O -0.56 -17.43 16.36 -3.05 -0.05 -17.48 16 19 C -0.17 -2.75 0.53 -52.40 -0.03 -2.77 16 20 C 0.47 8.30 2.71 71.98 0.19 8.49 16 21 F -0.17 -2.81 13.58 44.97 0.61 -2.20 16 22 F -0.17 -2.49 15.79 44.97 0.71 -1.78 16 23 F -0.19 -4.47 16.80 44.97 0.76 -3.71 16 24 C -0.11 -1.50 7.02 31.21 0.22 -1.28 16 25 C -0.13 -1.20 7.81 31.21 0.24 -0.96 16 26 C -0.12 -1.07 6.41 31.12 0.20 -0.87 16 27 C 0.11 2.56 6.37 86.86 0.55 3.11 16 28 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 29 H 0.37 20.10 7.67 -92.71 -0.71 19.39 16 30 H 0.03 1.10 7.75 -2.39 -0.02 1.08 16 31 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 2.00 7.97 -2.39 -0.02 1.98 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.50 7.91 -2.39 -0.02 1.48 16 36 H 0.10 1.08 5.48 -2.38 -0.01 1.06 16 37 H 0.10 1.46 4.75 -2.39 -0.01 1.44 16 38 H 0.08 1.38 7.40 -2.39 -0.02 1.36 16 39 H 0.12 1.16 7.06 -2.38 -0.02 1.14 16 40 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.13 0.64 7.99 -2.39 -0.02 0.62 16 43 H 0.10 0.84 5.02 -2.39 -0.01 0.83 16 44 H 0.08 1.76 8.04 -2.39 -0.02 1.74 16 45 H 0.07 1.73 8.06 -2.38 -0.02 1.71 16 Total: -1.00 -70.94 363.36 4.57 -66.37 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.31 Total: 22.11 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 4.54 Total: 3.43 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -4.34 Total: -114.78 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.05 Total: -17.48 kcal Atomic # 9 Polarization: -9.77 SS G_CDS: 2.08 Total: -7.70 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -70.94 4.57 -66.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326305058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.724 kcal (2) G-P(sol) polarization free energy of solvation -70.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds