Wall clock time and date at job start Tue Mar 31 2020 21:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47328 * 353.79776 * 3 2 1 5 5 H 1.48500 * 109.46845 * 113.79572 * 3 2 1 6 6 H 1.48499 * 109.47140 * 233.79807 * 3 2 1 7 7 C 1.38812 * 120.00014 * 180.28041 * 2 1 3 8 8 H 1.07998 * 119.99976 * 2.16398 * 7 2 1 9 9 N 1.36934 * 119.99770 * 182.17149 * 7 2 1 10 10 C 1.47067 * 136.06078 * 354.04458 * 9 7 2 11 11 C 1.53758 * 87.88808 * 152.96924 * 10 9 7 12 12 C 1.53005 * 114.39373 * 272.67895 * 11 10 9 13 13 C 1.53001 * 109.46957 * 158.80525 * 12 11 10 14 14 O 1.42898 * 109.46909 * 184.80692 * 13 12 11 15 15 N 1.46499 * 114.26695 * 139.79601 * 11 10 9 16 16 C 1.34775 * 119.99795 * 79.65763 * 15 11 10 17 17 O 1.21696 * 120.00369 * 3.41345 * 16 15 11 18 18 C 1.46665 * 119.99559 * 183.41593 * 16 15 11 19 19 C 1.36771 * 125.95352 * 180.02562 * 18 16 15 20 20 C 1.39654 * 106.52953 * 180.02562 * 19 18 16 21 21 C 1.35563 * 107.41711 * 0.02562 * 20 19 18 22 22 O 1.33496 * 108.61144 * 359.66890 * 21 20 19 23 23 C 1.51005 * 123.79568 * 179.88086 * 21 20 19 24 24 C 1.53321 * 108.41468 * 343.25843 * 23 21 20 25 25 C 1.53110 * 109.55744 * 50.16967 * 24 23 21 26 26 C 1.50701 * 128.12327 * 180.02562 * 20 19 18 27 27 C 1.47070 * 136.05716 * 174.42471 * 9 7 2 28 28 H 0.97001 * 119.99597 * 185.02078 * 1 2 3 29 29 H 1.08997 * 113.47141 * 267.70428 * 10 9 7 30 30 H 1.08998 * 113.46233 * 38.13989 * 10 9 7 31 31 H 1.08997 * 109.46969 * 278.80759 * 12 11 10 32 32 H 1.09003 * 109.46916 * 38.81080 * 12 11 10 33 33 H 1.08993 * 109.47463 * 304.81010 * 13 12 11 34 34 H 1.08999 * 109.46874 * 64.81239 * 13 12 11 35 35 H 0.96699 * 113.99823 * 179.97438 * 14 13 12 36 36 H 0.96995 * 119.99507 * 259.65754 * 15 11 10 37 37 H 1.08004 * 126.73594 * 0.02562 * 19 18 16 38 38 H 1.08992 * 109.67844 * 223.52228 * 23 21 20 39 39 H 1.09007 * 109.70227 * 103.00131 * 23 21 20 40 40 H 1.09002 * 109.45714 * 290.14060 * 24 23 21 41 41 H 1.09005 * 109.45574 * 170.19812 * 24 23 21 42 42 H 1.09005 * 109.47752 * 169.78082 * 25 24 23 43 43 H 1.09001 * 109.48353 * 49.76843 * 25 24 23 44 44 H 1.09001 * 109.68208 * 283.27704 * 26 20 19 45 45 H 1.09001 * 109.68388 * 43.82960 * 26 20 19 46 46 H 1.09003 * 113.46292 * 321.86057 * 27 9 7 47 47 H 1.09005 * 113.46945 * 92.23734 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2923 2.7424 -0.1513 5 1 2.9869 1.7639 1.2811 6 1 3.2139 1.6330 -1.1298 7 6 2.0103 -1.2021 -0.0059 8 1 1.4709 -2.1369 -0.0458 9 7 3.3789 -1.2027 0.0390 10 6 4.4405 -0.1859 -0.0078 11 6 5.3230 -1.1521 0.7997 12 6 5.1594 -1.0392 2.3168 13 6 5.6387 -2.3325 2.9790 14 8 5.3828 -2.2716 4.3835 15 7 6.7228 -1.1911 0.3695 16 6 7.5751 -0.2228 0.7602 17 8 7.1979 0.6495 1.5202 18 6 8.9571 -0.2206 0.2692 19 6 9.9200 0.6978 0.5852 20 6 11.0744 0.3155 -0.1015 21 6 10.7770 -0.8063 -0.8020 22 8 9.5025 -1.1284 -0.5696 23 6 11.7655 -1.5342 -1.6814 24 6 12.9433 -0.5950 -1.9667 25 6 13.4571 -0.0031 -0.6514 26 6 12.4234 0.9872 -0.0998 27 6 4.4344 -2.2210 0.1487 28 1 -0.4849 -0.8369 0.0735 29 1 4.8142 0.0055 -1.0137 30 1 4.1899 0.7282 0.5304 31 1 5.7516 -0.2014 2.6847 32 1 4.1090 -0.8753 2.5577 33 1 5.1055 -3.1802 2.5489 34 1 6.7088 -2.4525 2.8095 35 1 5.6615 -3.0604 4.8686 36 1 7.0362 -1.9138 -0.1964 37 1 9.8094 1.5513 1.2378 38 1 11.2853 -1.8158 -2.6184 39 1 12.1241 -2.4276 -1.1699 40 1 12.6145 0.2105 -2.6234 41 1 13.7442 -1.1537 -2.4509 42 1 14.3987 0.5162 -0.8298 43 1 13.6152 -0.8043 0.0706 44 1 12.3921 1.8754 -0.7308 45 1 12.6920 1.2690 0.9184 46 1 4.1787 -3.0407 0.8201 47 1 4.8058 -2.5669 -0.8160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329668340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:34 Heat of formation + Delta-G solvation = -14.404994 kcal Electronic energy + Delta-G solvation = -29419.252683 eV Core-core repulsion = 25377.600212 eV Total energy + Delta-G solvation = -4041.652471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.01613 -40.29169 -38.23161 -37.47610 -36.53419 -33.97760 -33.25978 -32.25687 -30.78558 -30.52606 -29.35660 -27.32635 -25.70167 -24.82970 -23.33334 -22.83487 -22.20788 -21.44604 -20.61963 -19.19592 -19.01964 -17.93881 -17.51149 -17.25306 -16.75581 -16.28047 -15.93095 -15.36239 -15.12874 -14.85358 -14.56743 -14.29536 -14.17530 -13.93700 -13.80668 -13.51900 -13.18613 -13.11568 -13.08280 -12.93141 -12.58200 -12.19044 -11.98621 -11.88533 -11.56716 -11.35975 -11.30945 -11.23400 -10.98274 -10.85265 -10.49601 -10.40105 -10.00335 -9.86439 -9.60939 -9.37206 -9.13367 -8.93979 -8.77056 -8.47587 -7.21292 -6.32173 -3.27539 0.94676 2.11714 2.40185 3.15739 3.21905 3.48353 3.51170 3.69267 4.20177 4.27193 4.34368 4.38366 4.49799 4.60350 4.65372 4.71186 4.89563 4.91006 4.99998 5.07006 5.08427 5.34165 5.36687 5.37709 5.40967 5.47521 5.48744 5.52171 5.59422 5.67138 5.69909 5.75959 5.81815 5.84483 5.92098 6.06191 6.19633 6.22669 6.24648 6.31644 6.52951 6.64502 6.75478 6.94213 6.99933 7.57973 7.79454 8.18966 8.20967 8.94538 9.46008 10.28439 11.19178 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016032 B = 0.003041 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.063560 B = 9204.869047 C = 9816.002949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.018 4.018 3 Si 1.067 2.933 4 H -0.294 1.294 5 H -0.286 1.286 6 H -0.290 1.290 7 C -0.303 4.303 8 H 0.085 0.915 9 N -0.616 5.616 10 C 0.096 3.904 11 C 0.132 3.868 12 C -0.107 4.107 13 C 0.084 3.916 14 O -0.571 6.571 15 N -0.704 5.704 16 C 0.602 3.398 17 O -0.510 6.510 18 C -0.075 4.075 19 C -0.113 4.113 20 C -0.190 4.190 21 C 0.013 3.987 22 O -0.157 6.157 23 C -0.040 4.040 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.050 4.050 27 C 0.124 3.876 28 H 0.261 0.739 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.036 0.964 35 H 0.373 0.627 36 H 0.403 0.597 37 H 0.160 0.840 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.056 0.944 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.754 -4.976 -1.387 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.217 4.217 3 Si 0.899 3.101 4 H -0.221 1.221 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.429 4.429 8 H 0.103 0.897 9 N -0.344 5.344 10 C -0.030 4.030 11 C 0.046 3.954 12 C -0.145 4.145 13 C 0.007 3.993 14 O -0.375 6.375 15 N -0.354 5.354 16 C 0.387 3.613 17 O -0.387 6.387 18 C -0.127 4.127 19 C -0.133 4.133 20 C -0.192 4.192 21 C -0.040 4.040 22 O -0.052 6.052 23 C -0.077 4.077 24 C -0.154 4.154 25 C -0.160 4.160 26 C -0.087 4.087 27 C -0.004 4.004 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.218 0.782 36 H 0.238 0.762 37 H 0.178 0.822 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 28.533 -2.376 -1.222 28.658 hybrid contribution 0.597 -2.558 -0.244 2.638 sum 29.130 -4.934 -1.466 29.581 Atomic orbital electron populations 1.70934 1.05262 1.29300 1.51748 1.25674 0.96415 1.00898 0.98761 0.83760 0.73589 0.76133 0.76582 1.22137 1.21460 1.21739 1.20102 0.76804 0.95793 1.50232 0.89723 1.45744 1.00239 1.01836 1.86607 1.23184 0.87877 0.94808 0.97152 1.22560 0.77358 1.00837 0.94661 1.21456 1.04644 0.97916 0.90473 1.22103 0.97897 0.98446 0.80902 1.86523 1.86450 1.44529 1.20031 1.45924 1.10348 1.26935 1.52226 1.16588 0.81540 0.82429 0.80698 1.90866 1.75542 1.37352 1.34904 1.22290 0.95578 0.93953 1.00920 1.21596 0.90974 1.00017 1.00753 1.20144 0.97482 0.98751 1.02804 1.22687 0.83028 0.97378 1.00927 1.83890 1.23553 1.45613 1.52168 1.20318 0.91860 0.97796 0.97687 1.21599 0.96603 0.99110 0.98093 1.21650 0.98270 0.99095 0.96986 1.20101 0.89222 0.97507 1.01903 1.22628 0.87650 0.92985 0.97096 0.92848 0.93541 0.92041 0.88682 0.88747 0.93621 0.94594 0.78158 0.76213 0.82249 0.89369 0.89212 0.91040 0.90323 0.91009 0.91443 0.90588 0.90513 0.92570 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.71 13.70 55.49 0.76 -28.95 16 2 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 3 Si 1.07 28.16 25.05 -169.99 -4.26 23.90 16 4 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 5 H -0.29 -7.36 6.51 56.52 0.37 -6.99 16 6 H -0.29 -7.26 6.53 56.52 0.37 -6.89 16 7 C -0.30 -8.77 11.09 -15.06 -0.17 -8.94 16 8 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 9 N -0.62 -15.22 3.46 -184.58 -0.64 -15.86 16 10 C 0.10 2.17 5.30 -8.38 -0.04 2.12 16 11 C 0.13 2.44 0.82 -131.56 -0.11 2.33 16 12 C -0.11 -2.05 4.91 -26.73 -0.13 -2.18 16 13 C 0.08 1.31 6.89 37.16 0.26 1.57 16 14 O -0.57 -8.90 13.66 -35.23 -0.48 -9.38 16 15 N -0.70 -10.67 5.24 -48.60 -0.25 -10.92 16 16 C 0.60 9.75 7.58 -12.86 -0.10 9.65 16 17 O -0.51 -9.87 14.62 5.19 0.08 -9.79 16 18 C -0.08 -1.05 7.14 -36.71 -0.26 -1.31 16 19 C -0.11 -1.42 10.60 -39.58 -0.42 -1.84 16 20 C -0.19 -1.97 5.93 -105.05 -0.62 -2.59 16 21 C 0.01 0.13 7.22 -35.12 -0.25 -0.13 16 22 O -0.16 -1.91 10.39 5.56 0.06 -1.85 16 23 C -0.04 -0.25 6.30 -27.57 -0.17 -0.42 16 24 C -0.12 -0.57 5.89 -26.51 -0.16 -0.73 16 25 C -0.12 -0.65 5.91 -26.46 -0.16 -0.80 16 26 C -0.05 -0.36 6.28 -27.67 -0.17 -0.54 16 27 C 0.12 2.36 7.81 -8.51 -0.07 2.30 16 28 H 0.26 8.19 8.73 -40.82 -0.36 7.84 16 29 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 30 H 0.06 1.51 3.99 -51.93 -0.21 1.30 16 31 H 0.09 1.95 5.78 -51.93 -0.30 1.65 16 32 H 0.09 2.10 7.94 -51.93 -0.41 1.69 16 33 H 0.05 0.67 6.63 -51.93 -0.34 0.32 16 34 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.37 3.72 9.12 45.56 0.42 4.13 16 36 H 0.40 4.96 8.44 -40.82 -0.34 4.62 16 37 H 0.16 1.90 8.06 -52.48 -0.42 1.47 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 1.02 6.70 -51.93 -0.35 0.67 16 47 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -35.94 374.29 -8.02 -43.95 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.25 Total: 5.40 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.67 Total: -2.14 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.13 Total: -55.73 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.35 Total: -21.02 kcal Atomic # 14 Polarization: 28.16 SS G_CDS: -4.26 Total: 23.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.94 -8.02 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329668340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.549 kcal (2) G-P(sol) polarization free energy of solvation -35.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds