Wall clock time and date at job start Tue Mar 31 2020 21:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 119.99919 * 2 1 4 4 H 1.48503 * 109.47328 * 353.79776 * 3 2 1 5 5 H 1.48500 * 109.46845 * 113.79572 * 3 2 1 6 6 H 1.48499 * 109.47140 * 233.79807 * 3 2 1 7 7 C 1.38812 * 120.00014 * 180.28041 * 2 1 3 8 8 H 1.07998 * 119.99976 * 2.16398 * 7 2 1 9 9 N 1.36934 * 119.99770 * 182.17149 * 7 2 1 10 10 C 1.47067 * 136.06078 * 354.04458 * 9 7 2 11 11 C 1.53758 * 87.88808 * 152.96924 * 10 9 7 12 12 C 1.53005 * 114.39373 * 272.67895 * 11 10 9 13 13 C 1.53001 * 109.46957 * 158.80525 * 12 11 10 14 14 O 1.42898 * 109.46909 * 184.80692 * 13 12 11 15 15 N 1.46499 * 114.26695 * 139.79601 * 11 10 9 16 16 C 1.34775 * 119.99795 * 79.65763 * 15 11 10 17 17 O 1.21696 * 120.00369 * 3.41345 * 16 15 11 18 18 C 1.46665 * 119.99559 * 183.41593 * 16 15 11 19 19 C 1.36771 * 125.95352 * 180.02562 * 18 16 15 20 20 C 1.39654 * 106.52953 * 180.02562 * 19 18 16 21 21 C 1.35563 * 107.41711 * 0.02562 * 20 19 18 22 22 O 1.33496 * 108.61144 * 359.66890 * 21 20 19 23 23 C 1.51005 * 123.79568 * 179.88086 * 21 20 19 24 24 C 1.53321 * 108.41468 * 343.25843 * 23 21 20 25 25 C 1.53110 * 109.55744 * 50.16967 * 24 23 21 26 26 C 1.50701 * 128.12327 * 180.02562 * 20 19 18 27 27 C 1.47070 * 136.05716 * 174.42471 * 9 7 2 28 28 H 0.97001 * 119.99597 * 185.02078 * 1 2 3 29 29 H 1.08997 * 113.47141 * 267.70428 * 10 9 7 30 30 H 1.08998 * 113.46233 * 38.13989 * 10 9 7 31 31 H 1.08997 * 109.46969 * 278.80759 * 12 11 10 32 32 H 1.09003 * 109.46916 * 38.81080 * 12 11 10 33 33 H 1.08993 * 109.47463 * 304.81010 * 13 12 11 34 34 H 1.08999 * 109.46874 * 64.81239 * 13 12 11 35 35 H 0.96699 * 113.99823 * 179.97438 * 14 13 12 36 36 H 0.96995 * 119.99507 * 259.65754 * 15 11 10 37 37 H 1.08004 * 126.73594 * 0.02562 * 19 18 16 38 38 H 1.08992 * 109.67844 * 223.52228 * 23 21 20 39 39 H 1.09007 * 109.70227 * 103.00131 * 23 21 20 40 40 H 1.09002 * 109.45714 * 290.14060 * 24 23 21 41 41 H 1.09005 * 109.45574 * 170.19812 * 24 23 21 42 42 H 1.09005 * 109.47752 * 169.78082 * 25 24 23 43 43 H 1.09001 * 109.48353 * 49.76843 * 25 24 23 44 44 H 1.09001 * 109.68208 * 283.27704 * 26 20 19 45 45 H 1.09001 * 109.68388 * 43.82960 * 26 20 19 46 46 H 1.09003 * 113.46292 * 321.86057 * 27 9 7 47 47 H 1.09005 * 113.46945 * 92.23734 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2923 2.7424 -0.1513 5 1 2.9869 1.7639 1.2811 6 1 3.2139 1.6330 -1.1298 7 6 2.0103 -1.2021 -0.0059 8 1 1.4709 -2.1369 -0.0458 9 7 3.3789 -1.2027 0.0390 10 6 4.4405 -0.1859 -0.0078 11 6 5.3230 -1.1521 0.7997 12 6 5.1594 -1.0392 2.3168 13 6 5.6387 -2.3325 2.9790 14 8 5.3828 -2.2716 4.3835 15 7 6.7228 -1.1911 0.3695 16 6 7.5751 -0.2228 0.7602 17 8 7.1979 0.6495 1.5202 18 6 8.9571 -0.2206 0.2692 19 6 9.9200 0.6978 0.5852 20 6 11.0744 0.3155 -0.1015 21 6 10.7770 -0.8063 -0.8020 22 8 9.5025 -1.1284 -0.5696 23 6 11.7655 -1.5342 -1.6814 24 6 12.9433 -0.5950 -1.9667 25 6 13.4571 -0.0031 -0.6514 26 6 12.4234 0.9872 -0.0998 27 6 4.4344 -2.2210 0.1487 28 1 -0.4849 -0.8369 0.0735 29 1 4.8142 0.0055 -1.0137 30 1 4.1899 0.7282 0.5304 31 1 5.7516 -0.2014 2.6847 32 1 4.1090 -0.8753 2.5577 33 1 5.1055 -3.1802 2.5489 34 1 6.7088 -2.4525 2.8095 35 1 5.6615 -3.0604 4.8686 36 1 7.0362 -1.9138 -0.1964 37 1 9.8094 1.5513 1.2378 38 1 11.2853 -1.8158 -2.6184 39 1 12.1241 -2.4276 -1.1699 40 1 12.6145 0.2105 -2.6234 41 1 13.7442 -1.1537 -2.4509 42 1 14.3987 0.5162 -0.8298 43 1 13.6152 -0.8043 0.0706 44 1 12.3921 1.8754 -0.7308 45 1 12.6920 1.2690 0.9184 46 1 4.1787 -3.0407 0.8201 47 1 4.8058 -2.5669 -0.8160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329668340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:33 Heat of formation + Delta-G solvation = -42.575880 kcal Electronic energy + Delta-G solvation = -29420.474264 eV Core-core repulsion = 25377.600212 eV Total energy + Delta-G solvation = -4042.874052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.89283 -41.78840 -39.68276 -38.04956 -37.79681 -35.56871 -34.26907 -34.06782 -32.27549 -31.12184 -30.24850 -29.18399 -27.39437 -25.85364 -24.51300 -23.79683 -23.26260 -22.76720 -21.76234 -20.62747 -20.05841 -19.58378 -18.94906 -18.53222 -17.69563 -17.58682 -17.08404 -16.94623 -16.19059 -16.14523 -15.71141 -15.56476 -15.37995 -15.14406 -15.02134 -14.73118 -14.48681 -14.18894 -13.92431 -13.75476 -13.58388 -13.53127 -13.45831 -13.27404 -13.06465 -12.86025 -12.62573 -12.38000 -12.04405 -11.75567 -11.72936 -11.44566 -11.42567 -11.33954 -11.29404 -11.08863 -10.74753 -10.71690 -10.27365 -9.36595 -9.29620 -8.67335 -5.54238 -0.05172 1.26395 1.33061 1.39155 1.45373 1.57736 1.95119 2.03678 2.43081 2.86087 2.96977 3.14117 3.39883 3.48311 3.72290 3.77448 3.97688 4.01542 4.06268 4.14537 4.17967 4.20682 4.28823 4.39840 4.43284 4.46024 4.49329 4.50671 4.61071 4.68147 4.71343 4.79457 4.89620 4.94518 4.95791 5.03808 5.07309 5.07996 5.15515 5.20872 5.23755 5.43035 5.46293 5.52872 5.84522 5.89036 6.39955 6.63532 6.87614 6.97100 7.24527 8.15263 8.86553 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016032 B = 0.003041 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.063560 B = 9204.869047 C = 9816.002949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 1.101 2.899 4 H -0.299 1.299 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.280 4.280 8 H 0.065 0.935 9 N -0.646 5.646 10 C 0.084 3.916 11 C 0.158 3.842 12 C -0.106 4.106 13 C 0.093 3.907 14 O -0.593 6.593 15 N -0.690 5.690 16 C 0.604 3.396 17 O -0.549 6.549 18 C -0.104 4.104 19 C -0.114 4.114 20 C -0.202 4.202 21 C 0.022 3.978 22 O -0.160 6.160 23 C -0.042 4.042 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.052 4.052 27 C 0.130 3.870 28 H 0.251 0.749 29 H 0.056 0.944 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.398 0.602 36 H 0.420 0.580 37 H 0.157 0.843 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.193 -6.512 -2.462 34.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.268 4.268 3 Si 0.930 3.070 4 H -0.227 1.227 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.408 4.408 8 H 0.083 0.917 9 N -0.374 5.374 10 C -0.042 4.042 11 C 0.071 3.929 12 C -0.144 4.144 13 C 0.016 3.984 14 O -0.401 6.401 15 N -0.342 5.342 16 C 0.392 3.608 17 O -0.429 6.429 18 C -0.156 4.156 19 C -0.134 4.134 20 C -0.203 4.203 21 C -0.031 4.031 22 O -0.056 6.056 23 C -0.078 4.078 24 C -0.152 4.152 25 C -0.158 4.158 26 C -0.089 4.089 27 C 0.005 3.995 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.248 0.752 36 H 0.259 0.741 37 H 0.175 0.825 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 33.054 -3.982 -2.310 33.373 hybrid contribution -0.595 -2.165 0.098 2.248 sum 32.459 -6.147 -2.212 33.110 Atomic orbital electron populations 1.71000 1.06374 1.28737 1.55242 1.26629 0.96564 1.03766 0.99824 0.83291 0.72927 0.73431 0.77315 1.22722 1.21376 1.19631 1.19995 0.79177 0.94666 1.46946 0.91682 1.45728 0.99784 1.04914 1.87016 1.23360 0.88307 0.94481 0.98046 1.21900 0.78800 0.98570 0.93657 1.21361 1.01943 0.99712 0.91433 1.21964 0.99065 0.96441 0.80960 1.86463 1.86869 1.46655 1.20150 1.45611 1.08647 1.27533 1.52390 1.16797 0.82396 0.81661 0.79926 1.90851 1.76592 1.38758 1.36688 1.21735 0.94768 0.95716 1.03359 1.21830 0.91761 0.99501 1.00338 1.20510 0.98151 0.99165 1.02490 1.23597 0.82430 0.97101 0.99947 1.83872 1.24568 1.45256 1.51878 1.20625 0.91278 0.98378 0.97544 1.21645 0.96644 0.99009 0.97905 1.21668 0.98261 0.98759 0.97091 1.20229 0.88129 0.98075 1.02498 1.22828 0.85465 0.92408 0.98820 0.93970 0.92589 0.94334 0.90345 0.92635 0.92235 0.92493 0.75231 0.74146 0.82492 0.88182 0.87357 0.91467 0.87851 0.89255 0.91310 0.90169 0.90207 0.91126 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.95 13.70 21.65 0.30 -63.66 16 2 C -0.07 -4.63 5.50 84.86 0.47 -4.17 16 3 Si 1.10 58.63 25.05 68.60 1.72 60.35 16 4 H -0.30 -16.01 7.11 99.48 0.71 -15.31 16 5 H -0.29 -14.97 6.51 99.48 0.65 -14.32 16 6 H -0.27 -13.29 6.53 99.48 0.65 -12.64 16 7 C -0.28 -16.47 11.09 84.03 0.93 -15.54 16 8 H 0.07 4.01 8.05 -2.91 -0.02 3.99 16 9 N -0.65 -31.66 3.46 -737.89 -2.56 -34.22 16 10 C 0.08 3.75 5.30 83.26 0.44 4.20 16 11 C 0.16 5.65 0.82 4.16 0.00 5.65 16 12 C -0.11 -4.05 4.91 30.60 0.15 -3.90 16 13 C 0.09 2.73 6.89 71.98 0.50 3.23 16 14 O -0.59 -17.63 13.66 -148.98 -2.03 -19.67 16 15 N -0.69 -19.62 5.24 -425.88 -2.23 -21.85 16 16 C 0.60 19.09 7.58 86.44 0.66 19.75 16 17 O -0.55 -21.48 14.62 -4.34 -0.06 -21.54 16 18 C -0.10 -2.76 7.14 24.13 0.17 -2.59 16 19 C -0.11 -2.75 10.60 22.27 0.24 -2.51 16 20 C -0.20 -3.76 5.93 -20.14 -0.12 -3.87 16 21 C 0.02 0.39 7.22 25.16 0.18 0.57 16 22 O -0.16 -3.53 10.39 -3.02 -0.03 -3.56 16 23 C -0.04 -0.36 6.30 30.05 0.19 -0.17 16 24 C -0.11 -0.66 5.89 30.74 0.18 -0.48 16 25 C -0.12 -0.83 5.91 30.77 0.18 -0.65 16 26 C -0.05 -0.62 6.28 29.99 0.19 -0.43 16 27 C 0.13 4.69 7.81 83.17 0.65 5.34 16 28 H 0.25 16.42 8.73 -92.71 -0.81 15.62 16 29 H 0.06 2.40 8.07 -2.39 -0.02 2.38 16 30 H 0.04 1.92 3.99 -2.39 -0.01 1.91 16 31 H 0.08 3.28 5.78 -2.39 -0.01 3.26 16 32 H 0.05 2.54 7.94 -2.39 -0.02 2.52 16 33 H 0.06 1.58 6.63 -2.39 -0.02 1.56 16 34 H 0.06 1.44 8.14 -2.39 -0.02 1.43 16 35 H 0.40 7.04 9.12 -74.06 -0.68 6.37 16 36 H 0.42 9.10 8.44 -92.71 -0.78 8.32 16 37 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 40 H 0.07 0.48 8.11 -2.39 -0.02 0.46 16 41 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 42 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 43 H 0.07 0.48 8.11 -2.39 -0.02 0.46 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 2.37 6.70 -2.39 -0.02 2.35 16 47 H 0.08 2.31 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -81.41 374.29 -0.49 -81.90 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.60 Total: 17.83 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 5.00 Total: 4.41 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -4.49 Total: -119.73 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -2.13 Total: -44.77 kcal Atomic # 14 Polarization: 58.63 SS G_CDS: 1.72 Total: 60.35 kcal Total: -81.41 -0.49 -81.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329668340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.323 kcal (2) G-P(sol) polarization free energy of solvation -81.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds