Wall clock time and date at job start Tue Mar 31 2020 21:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86797 * 120.00506 * 2 1 4 4 H 1.48496 * 109.47571 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47096 * 299.99759 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99783 * 3 2 1 7 7 C 1.37886 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99961 * 181.97780 * 7 2 1 9 9 C 1.50702 * 119.99736 * 1.98749 * 7 2 1 10 10 C 1.52994 * 115.55528 * 84.64956 * 9 7 2 11 11 N 1.46503 * 109.47133 * 57.83358 * 10 9 7 12 12 C 1.34772 * 120.00005 * 185.19712 * 11 10 9 13 13 O 1.21355 * 120.00154 * 5.58926 * 12 11 10 14 14 C 1.49452 * 119.99859 * 185.59541 * 12 11 10 15 15 O 1.21340 * 119.99968 * 354.48863 * 14 12 11 16 16 N 1.34779 * 119.99896 * 174.48537 * 14 12 11 17 17 C 1.46698 * 119.99970 * 180.27340 * 16 14 12 18 18 H 1.09865 * 110.52015 * 325.42982 * 17 16 14 19 19 C 1.58643 * 112.96085 * 199.18235 * 17 16 14 20 20 H 1.09418 * 116.95545 * 62.55413 * 19 17 16 21 21 C 1.56887 * 106.84587 * 194.64397 * 19 17 16 22 22 C 1.55923 * 108.37225 * 66.26233 * 21 19 17 23 23 H 1.09844 * 114.36395 * 128.52233 * 22 21 19 24 24 C 1.56412 * 108.67794 * 258.03361 * 22 21 19 25 25 O 1.48686 * 107.40371 * 95.32173 * 24 22 21 26 26 C 1.39467 * 91.97586 * 329.48229 * 25 24 22 27 27 H 1.08586 * 79.26805 * 330.40482 * 26 25 24 28 28 C 1.58471 * 103.40352 * 65.33792 * 26 25 24 29 29 H 1.09579 * 121.56761 * 53.03233 * 28 26 25 30 30 C 1.57264 * 99.87202 * 295.54899 * 19 17 16 31 31 C 1.53007 * 117.49320 * 230.32254 * 9 7 2 32 32 C 1.53004 * 117.49452 * 298.97532 * 9 7 2 33 33 H 0.97004 * 120.00109 * 5.01632 * 1 2 3 34 34 H 1.09007 * 109.46894 * 297.83791 * 10 9 7 35 35 H 1.09001 * 109.47187 * 177.83779 * 10 9 7 36 36 H 0.96999 * 119.99884 * 5.20169 * 11 10 9 37 37 H 0.96999 * 119.99856 * 0.02562 * 16 14 12 38 38 H 1.09066 * 109.24876 * 185.41461 * 21 19 17 39 39 H 1.08668 * 109.90973 * 305.66062 * 21 19 17 40 40 H 1.09564 * 109.57584 * 213.06638 * 24 22 21 41 41 H 1.08634 * 111.58164 * 333.87686 * 24 22 21 42 42 H 1.08729 * 112.21592 * 63.29646 * 30 19 17 43 43 H 1.09245 * 111.21463 * 188.31654 * 30 19 17 44 44 H 1.08998 * 117.49405 * 214.99813 * 31 9 7 45 45 H 1.08996 * 117.50137 * 0.02562 * 31 9 7 46 46 H 1.09005 * 117.49995 * 359.97438 * 32 9 7 47 47 H 1.09004 * 117.49814 * 144.97692 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0839 -1.1944 0.0328 9 6 1.2515 -2.4988 -0.0441 10 6 0.8517 -2.9826 -1.4394 11 7 2.0504 -3.1230 -2.2698 12 6 1.9330 -3.4378 -3.5750 13 8 0.8346 -3.5053 -4.0865 14 6 3.1556 -3.7038 -4.3924 15 8 4.2563 -3.5393 -3.9089 16 7 3.0355 -4.1265 -5.6665 17 6 4.2356 -4.3934 -6.4670 18 1 5.0385 -3.6915 -6.2030 19 6 3.9488 -4.4051 -8.0272 20 1 3.5897 -3.4723 -8.4725 21 6 5.1964 -5.0633 -8.7139 22 6 5.2638 -6.5594 -8.2802 23 1 5.3539 -7.2692 -9.1136 24 6 6.3582 -6.7113 -7.1731 25 8 5.6716 -6.6388 -5.8562 26 6 4.6845 -5.7938 -6.3630 27 1 5.5258 -5.5233 -6.9940 28 6 3.9290 -6.7031 -7.4183 29 1 3.5310 -7.6873 -7.1468 30 6 2.9897 -5.6482 -8.1158 31 6 1.6175 -3.5615 0.9941 32 6 0.2938 -2.8016 1.1100 33 1 -0.4850 0.8368 -0.0735 34 1 0.1766 -2.2584 -1.8954 35 1 0.3499 -3.9470 -1.3596 36 1 2.9287 -2.9895 -1.8802 37 1 2.1556 -4.2576 -6.0531 38 1 5.0834 -5.0044 -9.7971 39 1 6.1017 -4.5426 -8.4136 40 1 6.8376 -7.6923 -7.2629 41 1 7.1171 -5.9381 -7.2528 42 1 2.0647 -5.4939 -7.5655 43 1 2.7868 -5.9178 -9.1548 44 1 1.5733 -4.6052 0.6831 45 1 2.4024 -3.3167 1.7097 46 1 0.2086 -2.0572 1.9018 47 1 -0.6215 -3.3450 0.8752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330313222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:30 Heat of formation + Delta-G solvation = 101.127087 kcal Electronic energy + Delta-G solvation = -29368.554824 eV Core-core repulsion = 25331.912201 eV Total energy + Delta-G solvation = -4036.642624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.99109 -40.08339 -38.14554 -36.90196 -36.67987 -34.40994 -33.18909 -31.95925 -30.48376 -28.90807 -28.16620 -26.91516 -25.53252 -25.28411 -23.41675 -21.20143 -20.98832 -20.57466 -19.92843 -19.61803 -19.44051 -18.06084 -17.16040 -16.66814 -16.36463 -16.06949 -15.53297 -15.30014 -15.10086 -14.96518 -14.70167 -14.49823 -14.10004 -13.83708 -13.69066 -13.06180 -12.89226 -12.69592 -12.45468 -12.00173 -11.88808 -11.77668 -11.58976 -11.44942 -11.28165 -11.21511 -11.17397 -11.04534 -10.97762 -10.90448 -10.50137 -10.23324 -10.11673 -9.60866 -9.42762 -9.16116 -9.05785 -8.72923 -8.50423 -8.38968 -8.09009 -6.07677 -4.16308 1.82843 2.51074 2.64123 3.27331 3.36185 3.40372 3.63577 3.64506 3.75652 3.94847 4.06757 4.23093 4.31936 4.38222 4.42444 4.58486 4.65220 4.75780 4.89595 5.01208 5.10164 5.18202 5.21705 5.25633 5.30103 5.35902 5.37896 5.46621 5.54764 5.60135 5.64523 5.78665 5.99568 6.23793 6.30127 6.43276 6.48368 6.48664 6.70565 6.78539 7.04902 7.10167 7.26220 7.37015 7.51098 7.83004 7.90928 8.20739 8.33432 8.59593 8.86109 9.51466 11.00464 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.002681 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.832327 B =10443.240067 C =10765.843143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.498 4.498 8 H 0.062 0.938 9 C 0.022 3.978 10 C 0.160 3.840 11 N -0.663 5.663 12 C 0.497 3.503 13 O -0.540 6.540 14 C 0.513 3.487 15 O -0.516 6.516 16 N -0.699 5.699 17 C 0.214 3.786 18 H 0.106 0.894 19 C -0.107 4.107 20 H 0.128 0.872 21 C -0.122 4.122 22 C -0.130 4.130 23 H 0.104 0.896 24 C 0.016 3.984 25 O -0.306 6.306 26 C -0.086 4.086 27 H 0.077 0.923 28 C -0.106 4.106 29 H 0.129 0.871 30 C -0.122 4.122 31 C -0.211 4.211 32 C -0.141 4.141 33 H 0.261 0.739 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.414 0.586 37 H 0.411 0.589 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.359 -11.983 -19.912 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.021 3.979 10 C 0.037 3.963 11 N -0.313 5.313 12 C 0.276 3.724 13 O -0.419 6.419 14 C 0.294 3.706 15 O -0.390 6.390 16 N -0.353 5.353 17 C 0.109 3.891 18 H 0.124 0.876 19 C -0.126 4.126 20 H 0.145 0.855 21 C -0.160 4.160 22 C -0.148 4.148 23 H 0.122 0.878 24 C -0.060 4.060 25 O -0.223 6.223 26 C -0.146 4.146 27 H 0.095 0.905 28 C -0.125 4.125 29 H 0.147 0.853 30 C -0.159 4.159 31 C -0.248 4.248 32 C -0.180 4.180 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.250 0.750 37 H 0.248 0.752 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.349 -11.872 -19.623 24.407 hybrid contribution 0.674 0.958 -0.112 1.177 sum 9.023 -10.914 -19.734 24.289 Atomic orbital electron populations 1.69994 1.05835 1.26846 1.48461 1.24976 0.94831 0.98978 0.94234 0.86583 0.80363 0.83809 0.77593 1.19580 1.20967 1.20998 1.20420 0.92490 0.88472 1.52209 0.91978 1.19033 0.99507 0.93717 0.85641 1.21161 0.85112 0.98584 0.91453 1.45818 1.12819 1.64865 1.07782 1.19869 0.88637 0.80074 0.83792 1.90707 1.27182 1.52691 1.71368 1.20514 0.90103 0.77306 0.82679 1.90751 1.27522 1.49783 1.70937 1.45888 1.10289 1.67065 1.12080 1.21477 0.87743 0.89591 0.90322 0.87603 1.24732 0.97394 0.99188 0.91245 0.85460 1.23117 0.97826 0.93883 1.01156 1.25271 0.95507 0.96614 0.97416 0.87762 1.24940 0.94880 1.02675 0.83534 1.89957 1.40732 1.64959 1.26702 1.23902 0.96039 0.92695 1.01950 0.90543 1.25650 0.92941 0.98861 0.95015 0.85342 1.23567 0.97592 0.93697 1.01083 1.23067 1.00120 0.95605 1.06018 1.22477 0.91136 1.01302 1.03049 0.92939 0.90368 0.93917 0.74996 0.75216 0.90098 0.91105 0.89767 0.90374 0.90264 0.90286 0.91561 0.90222 0.89501 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.28 12.72 55.43 0.71 -23.58 16 2 C 0.07 1.98 5.43 -17.82 -0.10 1.88 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.50 -13.08 8.38 -34.44 -0.29 -13.36 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.02 0.52 1.51 -155.66 -0.23 0.28 16 10 C 0.16 3.59 5.57 -4.04 -0.02 3.57 16 11 N -0.66 -13.77 5.37 -60.73 -0.33 -14.10 16 12 C 0.50 9.69 7.88 -11.59 -0.09 9.60 16 13 O -0.54 -11.24 16.46 5.49 0.09 -11.15 16 14 C 0.51 8.84 7.89 -11.58 -0.09 8.75 16 15 O -0.52 -10.03 16.17 5.51 0.09 -9.94 16 16 N -0.70 -9.21 5.13 -53.84 -0.28 -9.49 16 17 C 0.21 2.35 2.97 -67.38 -0.20 2.15 16 18 H 0.11 1.27 7.69 -51.44 -0.40 0.88 16 19 C -0.11 -0.73 5.24 -83.07 -0.44 -1.16 16 20 H 0.13 0.67 8.18 -51.69 -0.42 0.25 16 21 C -0.12 -0.68 5.36 -23.07 -0.12 -0.80 16 22 C -0.13 -0.83 4.67 -83.57 -0.39 -1.22 16 23 H 0.10 0.48 8.21 -51.45 -0.42 0.06 16 24 C 0.02 0.14 6.69 37.83 0.25 0.39 16 25 O -0.31 -4.14 12.32 -31.42 -0.39 -4.52 16 26 C -0.09 -1.01 5.77 -27.55 -0.16 -1.17 16 27 H 0.08 0.74 1.07 -161.71 -0.17 0.57 16 28 C -0.11 -0.90 6.17 -81.47 -0.50 -1.40 16 29 H 0.13 1.08 8.19 -51.60 -0.42 0.66 16 30 C -0.12 -0.83 6.20 -21.94 -0.14 -0.96 16 31 C -0.21 -4.46 9.94 -26.69 -0.27 -4.73 16 32 C -0.14 -3.23 9.26 -26.69 -0.25 -3.48 16 33 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 34 H 0.08 1.98 8.09 -51.93 -0.42 1.56 16 35 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 36 H 0.41 8.56 7.73 -40.82 -0.32 8.24 16 37 H 0.41 4.83 6.71 -40.82 -0.27 4.55 16 38 H 0.08 0.32 8.15 -51.89 -0.42 -0.11 16 39 H 0.07 0.39 7.09 -52.12 -0.37 0.02 16 40 H 0.08 0.58 8.19 -51.61 -0.42 0.16 16 41 H 0.08 0.57 7.27 -52.13 -0.38 0.19 16 42 H 0.08 0.58 6.72 -52.08 -0.35 0.23 16 43 H 0.08 0.41 8.15 -51.79 -0.42 -0.01 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 46 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 47 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -31.68 376.20 -9.36 -41.04 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -6.87 Total: 11.80 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -3.03 Total: -1.67 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.10 Total: -47.16 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.21 Total: -25.62 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.68 -9.36 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330313222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.162 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds