Wall clock time and date at job start Tue Mar 31 2020 21:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86797 * 120.00506 * 2 1 4 4 H 1.48496 * 109.47571 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47096 * 299.99759 * 3 2 1 6 6 H 1.48500 * 109.47264 * 59.99783 * 3 2 1 7 7 C 1.37886 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99961 * 181.97780 * 7 2 1 9 9 C 1.50702 * 119.99736 * 1.98749 * 7 2 1 10 10 C 1.52994 * 115.55528 * 84.64956 * 9 7 2 11 11 N 1.46503 * 109.47133 * 57.83358 * 10 9 7 12 12 C 1.34772 * 120.00005 * 185.19712 * 11 10 9 13 13 O 1.21355 * 120.00154 * 5.58926 * 12 11 10 14 14 C 1.49452 * 119.99859 * 185.59541 * 12 11 10 15 15 O 1.21340 * 119.99968 * 354.48863 * 14 12 11 16 16 N 1.34779 * 119.99896 * 174.48537 * 14 12 11 17 17 C 1.46698 * 119.99970 * 180.27340 * 16 14 12 18 18 H 1.09865 * 110.52015 * 325.42982 * 17 16 14 19 19 C 1.58643 * 112.96085 * 199.18235 * 17 16 14 20 20 H 1.09418 * 116.95545 * 62.55413 * 19 17 16 21 21 C 1.56887 * 106.84587 * 194.64397 * 19 17 16 22 22 C 1.55923 * 108.37225 * 66.26233 * 21 19 17 23 23 H 1.09844 * 114.36395 * 128.52233 * 22 21 19 24 24 C 1.56412 * 108.67794 * 258.03361 * 22 21 19 25 25 O 1.48686 * 107.40371 * 95.32173 * 24 22 21 26 26 C 1.39467 * 91.97586 * 329.48229 * 25 24 22 27 27 H 1.08586 * 79.26805 * 330.40482 * 26 25 24 28 28 C 1.58471 * 103.40352 * 65.33792 * 26 25 24 29 29 H 1.09579 * 121.56761 * 53.03233 * 28 26 25 30 30 C 1.57264 * 99.87202 * 295.54899 * 19 17 16 31 31 C 1.53007 * 117.49320 * 230.32254 * 9 7 2 32 32 C 1.53004 * 117.49452 * 298.97532 * 9 7 2 33 33 H 0.97004 * 120.00109 * 5.01632 * 1 2 3 34 34 H 1.09007 * 109.46894 * 297.83791 * 10 9 7 35 35 H 1.09001 * 109.47187 * 177.83779 * 10 9 7 36 36 H 0.96999 * 119.99884 * 5.20169 * 11 10 9 37 37 H 0.96999 * 119.99856 * 0.02562 * 16 14 12 38 38 H 1.09066 * 109.24876 * 185.41461 * 21 19 17 39 39 H 1.08668 * 109.90973 * 305.66062 * 21 19 17 40 40 H 1.09564 * 109.57584 * 213.06638 * 24 22 21 41 41 H 1.08634 * 111.58164 * 333.87686 * 24 22 21 42 42 H 1.08729 * 112.21592 * 63.29646 * 30 19 17 43 43 H 1.09245 * 111.21463 * 188.31654 * 30 19 17 44 44 H 1.08998 * 117.49405 * 214.99813 * 31 9 7 45 45 H 1.08996 * 117.50137 * 0.02562 * 31 9 7 46 46 H 1.09005 * 117.49995 * 359.97438 * 32 9 7 47 47 H 1.09004 * 117.49814 * 144.97692 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0839 -1.1944 0.0328 9 6 1.2515 -2.4988 -0.0441 10 6 0.8517 -2.9826 -1.4394 11 7 2.0504 -3.1230 -2.2698 12 6 1.9330 -3.4378 -3.5750 13 8 0.8346 -3.5053 -4.0865 14 6 3.1556 -3.7038 -4.3924 15 8 4.2563 -3.5393 -3.9089 16 7 3.0355 -4.1265 -5.6665 17 6 4.2356 -4.3934 -6.4670 18 1 5.0385 -3.6915 -6.2030 19 6 3.9488 -4.4051 -8.0272 20 1 3.5897 -3.4723 -8.4725 21 6 5.1964 -5.0633 -8.7139 22 6 5.2638 -6.5594 -8.2802 23 1 5.3539 -7.2692 -9.1136 24 6 6.3582 -6.7113 -7.1731 25 8 5.6716 -6.6388 -5.8562 26 6 4.6845 -5.7938 -6.3630 27 1 5.5258 -5.5233 -6.9940 28 6 3.9290 -6.7031 -7.4183 29 1 3.5310 -7.6873 -7.1468 30 6 2.9897 -5.6482 -8.1158 31 6 1.6175 -3.5615 0.9941 32 6 0.2938 -2.8016 1.1100 33 1 -0.4850 0.8368 -0.0735 34 1 0.1766 -2.2584 -1.8954 35 1 0.3499 -3.9470 -1.3596 36 1 2.9287 -2.9895 -1.8802 37 1 2.1556 -4.2576 -6.0531 38 1 5.0834 -5.0044 -9.7971 39 1 6.1017 -4.5426 -8.4136 40 1 6.8376 -7.6923 -7.2629 41 1 7.1171 -5.9381 -7.2528 42 1 2.0647 -5.4939 -7.5655 43 1 2.7868 -5.9178 -9.1548 44 1 1.5733 -4.6052 0.6831 45 1 2.4024 -3.3167 1.7097 46 1 0.2086 -2.0572 1.9018 47 1 -0.6215 -3.3450 0.8752 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330313222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:29 Heat of formation + Delta-G solvation = 78.692331 kcal Electronic energy + Delta-G solvation = -29369.527668 eV Core-core repulsion = 25331.912201 eV Total energy + Delta-G solvation = -4037.615468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.66184 -41.55171 -39.64996 -38.46767 -37.75342 -35.62890 -34.72213 -33.98357 -31.22782 -29.58782 -28.96704 -28.47508 -27.40181 -26.08729 -24.76821 -22.94089 -21.84542 -21.41520 -21.30969 -21.13844 -20.20335 -19.53079 -18.16103 -17.90521 -17.71374 -17.34636 -16.80233 -16.67926 -16.48845 -16.28066 -15.81447 -15.71093 -15.34734 -15.28638 -14.71187 -14.58135 -14.45081 -13.78496 -13.62892 -13.48402 -13.07103 -12.93809 -12.87454 -12.77581 -12.55096 -12.37426 -12.34235 -12.02809 -11.94140 -11.78335 -11.75573 -11.60196 -11.43918 -11.07973 -10.99920 -10.74681 -10.44088 -10.25950 -10.17764 -9.91307 -9.57291 -8.12634 -6.25335 0.36368 1.32461 1.38438 1.42433 1.52175 1.77760 2.19354 2.41031 2.65069 3.09083 3.11826 3.16125 3.39737 3.42941 3.55082 3.58646 3.78659 3.82290 4.07306 4.09453 4.16633 4.19984 4.28153 4.47600 4.49896 4.56152 4.61316 4.62735 4.66349 4.80196 4.87146 4.92447 4.97035 5.01488 5.06989 5.11988 5.14204 5.16079 5.22679 5.27475 5.35001 5.52896 5.66289 5.70852 5.75564 5.98916 6.34622 6.45723 6.77470 6.81636 6.99812 7.44355 8.95140 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018815 B = 0.002681 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.832327 B =10443.240067 C =10765.843143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.029 3.971 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.506 4.506 8 H 0.056 0.944 9 C -0.003 4.003 10 C 0.174 3.826 11 N -0.668 5.668 12 C 0.496 3.504 13 O -0.554 6.554 14 C 0.515 3.485 15 O -0.545 6.545 16 N -0.677 5.677 17 C 0.197 3.803 18 H 0.089 0.911 19 C -0.093 4.093 20 H 0.149 0.851 21 C -0.121 4.121 22 C -0.114 4.114 23 H 0.134 0.866 24 C 0.005 3.995 25 O -0.357 6.357 26 C -0.133 4.133 27 H 0.104 0.896 28 C -0.109 4.109 29 H 0.123 0.877 30 C -0.117 4.117 31 C -0.184 4.184 32 C -0.145 4.145 33 H 0.260 0.740 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.414 0.586 37 H 0.418 0.582 38 H 0.112 0.888 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.224 -12.813 -22.709 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.172 4.172 3 Si 0.771 3.229 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.544 4.544 8 H 0.074 0.926 9 C -0.004 4.004 10 C 0.051 3.949 11 N -0.317 5.317 12 C 0.277 3.723 13 O -0.434 6.434 14 C 0.296 3.704 15 O -0.422 6.422 16 N -0.331 5.331 17 C 0.094 3.906 18 H 0.107 0.893 19 C -0.111 4.111 20 H 0.167 0.833 21 C -0.159 4.159 22 C -0.132 4.132 23 H 0.152 0.848 24 C -0.071 4.071 25 O -0.276 6.276 26 C -0.192 4.192 27 H 0.121 0.879 28 C -0.127 4.127 29 H 0.141 0.859 30 C -0.154 4.154 31 C -0.221 4.221 32 C -0.184 4.184 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.250 0.750 37 H 0.257 0.743 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.125 0.875 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.216 -12.722 -22.464 27.412 hybrid contribution 0.455 1.139 0.753 1.439 sum 9.671 -11.583 -21.711 26.440 Atomic orbital electron populations 1.70088 1.06887 1.27340 1.49650 1.25619 0.95536 1.01749 0.94301 0.85716 0.79327 0.80480 0.77414 1.19254 1.21015 1.20689 1.20662 0.92399 0.89844 1.51503 0.92629 1.19083 1.00587 0.94081 0.86622 1.20832 0.85221 0.98076 0.90812 1.45769 1.12186 1.65443 1.08336 1.20301 0.89383 0.79118 0.83507 1.90687 1.28040 1.53122 1.71574 1.20087 0.88627 0.77951 0.83785 1.90739 1.27922 1.51757 1.71757 1.45915 1.11831 1.64685 1.10676 1.22017 0.86090 0.89455 0.93078 0.89341 1.24832 0.98400 1.00342 0.87557 0.83317 1.23173 0.97063 0.92826 1.02804 1.25270 0.92960 0.98008 0.96998 0.84848 1.25209 0.95631 1.03850 0.82376 1.89892 1.42097 1.65628 1.30025 1.24326 0.98055 0.93604 1.03229 0.87946 1.25669 0.94459 0.98471 0.94098 0.85916 1.23596 0.96708 0.92838 1.02299 1.23061 0.98778 0.96165 1.04089 1.22398 0.92450 1.01461 1.02049 0.93087 0.93725 0.92640 0.75006 0.74326 0.86935 0.90970 0.88549 0.89551 0.91152 0.87462 0.89089 0.90025 0.91671 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.99 12.72 21.45 0.27 -50.71 16 2 C 0.03 1.57 5.43 84.66 0.46 2.03 16 3 Si 0.94 43.53 29.54 68.60 2.03 45.56 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.51 -26.90 8.38 25.60 0.21 -26.68 16 8 H 0.06 2.96 7.81 -2.91 -0.02 2.93 16 9 C 0.00 -0.14 1.51 -52.93 -0.08 -0.22 16 10 C 0.17 7.95 5.57 86.38 0.48 8.43 16 11 N -0.67 -28.22 5.37 -464.40 -2.49 -30.71 16 12 C 0.50 19.68 7.88 87.27 0.69 20.37 16 13 O -0.55 -23.28 16.46 -3.26 -0.05 -23.33 16 14 C 0.51 18.08 7.89 87.27 0.69 18.77 16 15 O -0.54 -21.80 16.17 -3.21 -0.05 -21.85 16 16 N -0.68 -17.75 5.13 -442.61 -2.27 -20.02 16 17 C 0.20 4.21 2.97 45.24 0.13 4.35 16 18 H 0.09 2.15 7.69 -1.93 -0.01 2.14 16 19 C -0.09 -0.99 5.24 -5.91 -0.03 -1.02 16 20 H 0.15 0.99 8.18 -2.16 -0.02 0.98 16 21 C -0.12 -0.86 5.36 32.97 0.18 -0.69 16 22 C -0.11 -1.08 4.67 -6.22 -0.03 -1.11 16 23 H 0.13 0.57 8.21 -1.94 -0.02 0.55 16 24 C 0.00 0.08 6.69 72.42 0.48 0.56 16 25 O -0.36 -9.83 12.32 -135.33 -1.67 -11.49 16 26 C -0.13 -3.06 5.77 30.07 0.17 -2.88 16 27 H 0.10 1.86 1.07 -174.55 -0.19 1.67 16 28 C -0.11 -1.63 6.17 -4.87 -0.03 -1.66 16 29 H 0.12 1.93 8.19 -2.08 -0.02 1.92 16 30 C -0.12 -1.23 6.20 33.70 0.21 -1.02 16 31 C -0.18 -7.60 9.94 30.62 0.30 -7.29 16 32 C -0.15 -6.64 9.26 30.62 0.28 -6.36 16 33 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 34 H 0.04 2.32 8.09 -2.38 -0.02 2.30 16 35 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 36 H 0.41 17.48 7.73 -92.71 -0.72 16.77 16 37 H 0.42 9.56 6.71 -92.71 -0.62 8.94 16 38 H 0.11 0.22 8.15 -2.35 -0.02 0.20 16 39 H 0.07 0.55 7.09 -2.56 -0.02 0.53 16 40 H 0.10 1.18 8.19 -2.09 -0.02 1.17 16 41 H 0.09 1.13 7.27 -2.58 -0.02 1.11 16 42 H 0.07 0.88 6.72 -2.53 -0.02 0.86 16 43 H 0.11 0.59 8.15 -2.26 -0.02 0.57 16 44 H 0.09 3.31 8.14 -2.39 -0.02 3.30 16 45 H 0.08 3.33 8.14 -2.39 -0.02 3.32 16 46 H 0.06 3.24 8.14 -2.38 -0.02 3.22 16 47 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -70.74 376.20 -0.60 -71.34 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.49 Total: 35.67 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 4.13 Total: 5.55 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -4.49 Total: -101.45 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -1.77 Total: -56.68 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -70.74 -0.60 -71.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330313222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.037 kcal (2) G-P(sol) polarization free energy of solvation -70.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds