Wall clock time and date at job start Tue Mar 31 2020 23:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99966 * 2 1 4 4 H 1.48505 * 109.46956 * 239.99907 * 3 2 1 5 5 H 1.48496 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46910 * 120.00348 * 3 2 1 7 7 C 1.37878 * 119.99333 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99454 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00546 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47385 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47272 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.46998 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47561 * 55.00043 * 12 11 10 14 14 N 1.46898 * 109.47440 * 294.99581 * 12 11 10 15 15 C 1.50702 * 109.47050 * 174.99787 * 12 11 10 16 16 O 1.21287 * 119.99909 * 100.00119 * 15 12 11 17 17 N 1.34774 * 120.00161 * 279.99935 * 15 12 11 18 18 C 1.46495 * 120.00156 * 180.02562 * 17 15 12 19 19 H 1.08999 * 109.47694 * 34.99527 * 18 17 15 20 20 C 1.53004 * 109.47438 * 155.00338 * 18 17 15 21 21 C 1.50706 * 109.46503 * 294.99458 * 20 18 17 22 22 C 1.38238 * 119.99727 * 90.00317 * 21 20 18 23 23 C 1.38234 * 119.99693 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.00240 * 359.97438 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.26327 * 24 23 22 26 26 C 1.38234 * 120.00207 * 270.01808 * 21 20 18 27 27 C 1.50703 * 109.46840 * 274.99828 * 18 17 15 28 28 O 1.20825 * 120.00170 * 0.02562 * 27 18 17 29 29 O 1.34237 * 120.00054 * 180.02562 * 27 18 17 30 30 H 0.97003 * 119.99921 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46894 * 60.00531 * 9 7 2 32 32 H 1.09002 * 109.47457 * 300.00895 * 9 7 2 33 33 H 1.09003 * 109.47260 * 60.00539 * 10 9 7 34 34 H 1.08998 * 109.46997 * 300.00405 * 10 9 7 35 35 H 1.08996 * 109.46980 * 60.00225 * 11 10 9 36 36 H 1.08998 * 109.46974 * 299.99848 * 11 10 9 37 37 H 1.00900 * 111.00173 * 300.00798 * 14 12 11 38 38 H 1.00906 * 110.99892 * 63.95819 * 14 12 11 39 39 H 0.97007 * 120.00025 * 359.97438 * 17 15 12 40 40 H 1.09000 * 109.47324 * 175.00047 * 20 18 17 41 41 H 1.08993 * 109.47443 * 54.99251 * 20 18 17 42 42 H 1.07997 * 119.99846 * 359.97438 * 22 21 20 43 43 H 1.07999 * 119.99751 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 46 46 H 1.07999 * 120.00008 * 0.02562 * 26 21 20 47 47 H 0.96702 * 116.99909 * 180.02562 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 6 2.4742 -6.1500 -0.0005 13 1 3.1578 -6.0433 0.8418 14 7 3.2381 -6.1419 -1.2552 15 6 1.7246 -7.4516 0.1227 16 8 1.5130 -8.1253 -0.8634 17 7 1.2895 -7.8671 1.3287 18 6 0.5614 -9.1326 1.4486 19 1 0.9619 -9.8515 0.7338 20 6 0.7220 -9.6810 2.8679 21 6 2.1681 -10.0285 3.1114 22 6 3.0293 -9.0792 3.6291 23 6 4.3558 -9.3978 3.8520 24 6 4.8210 -10.6658 3.5577 25 6 3.9610 -11.6136 3.0354 26 6 2.6333 -11.2964 2.8168 27 6 -0.8998 -8.9005 1.1622 28 8 -1.2926 -7.7918 0.8858 29 8 -1.7651 -9.9254 1.2142 30 1 -0.4850 0.8401 -0.0004 31 1 0.6240 -2.5567 -0.8904 32 1 0.6245 -2.5571 0.8896 33 1 2.8717 -3.6045 0.8895 34 1 2.8718 -3.6044 -0.8905 35 1 0.8537 -5.0446 -0.8914 36 1 0.8531 -5.0451 0.8886 37 1 2.6264 -6.2396 -2.0517 38 1 3.8000 -5.3072 -1.3310 39 1 1.4591 -7.3285 2.1175 40 1 0.1091 -10.5749 2.9836 41 1 0.4035 -8.9265 3.5872 42 1 2.6659 -8.0884 3.8587 43 1 5.0288 -8.6560 4.2561 44 1 5.8576 -10.9145 3.7314 45 1 4.3254 -12.6029 2.8013 46 1 1.9606 -12.0379 2.4118 47 1 -2.6921 -9.7276 1.0225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335146546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:28 Heat of formation + Delta-G solvation = -123.983298 kcal Electronic energy + Delta-G solvation = -28606.979040 eV Core-core repulsion = 24560.574898 eV Total energy + Delta-G solvation = -4046.404142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 6.85 seconds Orbital eigenvalues (eV) -40.99041 -39.60589 -39.38178 -36.50999 -36.07053 -35.55737 -33.34439 -32.74037 -31.22408 -31.18034 -29.76263 -27.74010 -25.71963 -25.01243 -22.95797 -22.71238 -21.76746 -21.11700 -20.31639 -20.07905 -18.32278 -17.61364 -17.24803 -16.94317 -16.33459 -16.27679 -15.80288 -15.35879 -15.28911 -14.90988 -14.62080 -14.54533 -14.42468 -13.84325 -13.71473 -13.63163 -13.35845 -13.19670 -12.98557 -12.53442 -12.45596 -12.10966 -12.02615 -11.81740 -11.67394 -11.49169 -11.29719 -11.18613 -10.83052 -10.78661 -10.72139 -10.57327 -9.88092 -9.74555 -9.44995 -9.37624 -9.18802 -9.13212 -9.02844 -8.48131 -8.35797 -6.00900 -4.04138 1.00578 1.12189 2.00274 2.36276 2.78556 3.14381 3.31880 3.36589 3.38673 3.47974 4.29750 4.36822 4.44127 4.45571 4.70474 4.73863 4.78806 4.85231 4.86248 5.02577 5.12429 5.20690 5.24230 5.31382 5.34535 5.35011 5.39909 5.70647 5.74437 5.80755 6.00885 6.08331 6.16731 6.24462 6.26576 6.28346 6.30686 6.60494 6.70188 6.77979 7.04757 7.12140 7.37000 7.60905 7.65159 7.66934 7.78565 7.98447 8.17069 8.39904 9.02980 9.60067 11.10258 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.002602 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.614601 B =10758.446310 C =11835.633655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.146 4.146 12 C 0.079 3.921 13 H 0.100 0.900 14 N -0.830 5.830 15 C 0.535 3.465 16 O -0.530 6.530 17 N -0.711 5.711 18 C 0.167 3.833 19 H 0.128 0.872 20 C -0.083 4.083 21 C -0.085 4.085 22 C -0.109 4.109 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.112 4.112 27 C 0.461 3.539 28 O -0.493 6.493 29 O -0.518 6.518 30 H 0.261 0.739 31 H 0.014 0.986 32 H 0.015 0.985 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.349 0.651 38 H 0.352 0.648 39 H 0.407 0.593 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 -25.934 9.274 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.185 4.185 12 C -0.036 4.036 13 H 0.118 0.882 14 N -0.362 5.362 15 C 0.323 3.677 16 O -0.404 6.404 17 N -0.366 5.366 18 C 0.059 3.941 19 H 0.145 0.855 20 C -0.120 4.120 21 C -0.085 4.085 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.138 4.138 25 C -0.137 4.137 26 C -0.130 4.130 27 C 0.299 3.701 28 O -0.378 6.378 29 O -0.330 6.330 30 H 0.071 0.929 31 H 0.033 0.967 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.243 0.757 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 4.239 -26.724 8.813 28.457 hybrid contribution -0.794 2.305 0.010 2.438 sum 3.446 -24.419 8.823 26.191 Atomic orbital electron populations 1.69964 1.06081 1.26729 1.50629 1.25039 0.94844 0.99287 0.95315 0.86657 0.79575 0.83145 0.78612 1.20230 1.21292 1.20232 1.21210 0.92944 0.91095 1.50848 0.92744 1.19069 0.93917 0.91213 0.97268 1.21649 0.99090 0.93535 1.00263 1.22391 0.98171 0.94820 1.03145 1.21395 0.95452 0.90960 0.95823 0.88193 1.58701 1.28165 1.46078 1.03249 1.20802 0.77709 0.87034 0.82191 1.90660 1.56618 1.56361 1.36811 1.45730 1.57153 1.22763 1.10925 1.20303 0.84996 0.88805 0.99982 0.85467 1.20835 0.94536 1.03095 0.93558 1.19601 0.94681 0.94279 0.99959 1.21060 0.93659 0.98864 0.99102 1.21177 0.95675 0.96740 0.99776 1.21196 0.99749 0.93739 0.99104 1.21146 0.93641 0.99574 0.99297 1.21059 0.95996 0.96075 0.99886 1.24100 0.89921 0.82439 0.73612 1.90798 1.79061 1.25251 1.42679 1.84489 1.23725 1.41539 1.83246 0.92926 0.96714 0.96615 0.93075 0.93382 0.91739 0.91392 0.83729 0.83270 0.75748 0.87809 0.89453 0.86021 0.85841 0.86129 0.86047 0.85860 0.73008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.11 4.92 -26.73 -0.13 -2.24 16 11 C -0.15 -2.47 4.84 -26.73 -0.13 -2.60 16 12 C 0.08 1.13 3.21 -68.87 -0.22 0.90 16 13 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 14 N -0.83 -11.96 8.94 -5.66 -0.05 -12.01 16 15 C 0.54 7.89 6.91 -10.99 -0.08 7.81 16 16 O -0.53 -9.50 15.91 5.55 0.09 -9.41 16 17 N -0.71 -8.00 4.06 -54.93 -0.22 -8.23 16 18 C 0.17 1.65 2.47 -69.08 -0.17 1.48 16 19 H 0.13 1.36 7.58 -51.93 -0.39 0.97 16 20 C -0.08 -0.56 4.85 -27.88 -0.14 -0.69 16 21 C -0.09 -0.65 4.95 -104.62 -0.52 -1.17 16 22 C -0.11 -0.85 9.10 -39.58 -0.36 -1.21 16 23 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 24 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 26 C -0.11 -0.84 9.70 -39.58 -0.38 -1.23 16 27 C 0.46 5.29 7.66 36.01 0.28 5.57 16 28 O -0.49 -7.77 17.08 -18.75 -0.32 -8.09 16 29 O -0.52 -4.22 13.23 -39.28 -0.52 -4.74 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.01 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.91 6.87 -51.93 -0.36 0.55 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.35 5.29 8.58 -39.29 -0.34 4.95 16 38 H 0.35 4.74 7.55 -39.29 -0.30 4.44 16 39 H 0.41 3.74 7.82 -40.82 -0.32 3.42 16 40 H 0.10 0.55 7.94 -51.93 -0.41 0.14 16 41 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 42 H 0.12 0.77 7.57 -52.49 -0.40 0.37 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.41 1.90 9.10 45.56 0.41 2.32 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -36.80 399.88 -9.16 -45.96 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.29 Total: 10.65 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.59 Total: -10.37 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.46 Total: -46.70 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.75 Total: -22.24 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.80 -9.16 -45.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335146546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.020 kcal (2) G-P(sol) polarization free energy of solvation -36.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.85 seconds