Wall clock time and date at job start Tue Mar 31 2020 23:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99966 * 2 1 4 4 H 1.48505 * 109.46956 * 239.99907 * 3 2 1 5 5 H 1.48496 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46910 * 120.00348 * 3 2 1 7 7 C 1.37878 * 119.99333 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99454 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00546 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47385 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47272 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.46998 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.47561 * 55.00043 * 12 11 10 14 14 N 1.46898 * 109.47440 * 294.99581 * 12 11 10 15 15 C 1.50702 * 109.47050 * 174.99787 * 12 11 10 16 16 O 1.21287 * 119.99909 * 100.00119 * 15 12 11 17 17 N 1.34774 * 120.00161 * 279.99935 * 15 12 11 18 18 C 1.46495 * 120.00156 * 180.02562 * 17 15 12 19 19 H 1.08999 * 109.47694 * 34.99527 * 18 17 15 20 20 C 1.53004 * 109.47438 * 155.00338 * 18 17 15 21 21 C 1.50706 * 109.46503 * 294.99458 * 20 18 17 22 22 C 1.38238 * 119.99727 * 90.00317 * 21 20 18 23 23 C 1.38234 * 119.99693 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.00240 * 359.97438 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.26327 * 24 23 22 26 26 C 1.38234 * 120.00207 * 270.01808 * 21 20 18 27 27 C 1.50703 * 109.46840 * 274.99828 * 18 17 15 28 28 O 1.20825 * 120.00170 * 0.02562 * 27 18 17 29 29 O 1.34237 * 120.00054 * 180.02562 * 27 18 17 30 30 H 0.97003 * 119.99921 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46894 * 60.00531 * 9 7 2 32 32 H 1.09002 * 109.47457 * 300.00895 * 9 7 2 33 33 H 1.09003 * 109.47260 * 60.00539 * 10 9 7 34 34 H 1.08998 * 109.46997 * 300.00405 * 10 9 7 35 35 H 1.08996 * 109.46980 * 60.00225 * 11 10 9 36 36 H 1.08998 * 109.46974 * 299.99848 * 11 10 9 37 37 H 1.00900 * 111.00173 * 300.00798 * 14 12 11 38 38 H 1.00906 * 110.99892 * 63.95819 * 14 12 11 39 39 H 0.97007 * 120.00025 * 359.97438 * 17 15 12 40 40 H 1.09000 * 109.47324 * 175.00047 * 20 18 17 41 41 H 1.08993 * 109.47443 * 54.99251 * 20 18 17 42 42 H 1.07997 * 119.99846 * 359.97438 * 22 21 20 43 43 H 1.07999 * 119.99751 * 179.97438 * 23 22 21 44 44 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 45 45 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 46 46 H 1.07999 * 120.00008 * 0.02562 * 26 21 20 47 47 H 0.96702 * 116.99909 * 180.02562 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9872 -0.0012 12 6 2.4742 -6.1500 -0.0005 13 1 3.1578 -6.0433 0.8418 14 7 3.2381 -6.1419 -1.2552 15 6 1.7246 -7.4516 0.1227 16 8 1.5130 -8.1253 -0.8634 17 7 1.2895 -7.8671 1.3287 18 6 0.5614 -9.1326 1.4486 19 1 0.9619 -9.8515 0.7338 20 6 0.7220 -9.6810 2.8679 21 6 2.1681 -10.0285 3.1114 22 6 3.0293 -9.0792 3.6291 23 6 4.3558 -9.3978 3.8520 24 6 4.8210 -10.6658 3.5577 25 6 3.9610 -11.6136 3.0354 26 6 2.6333 -11.2964 2.8168 27 6 -0.8998 -8.9005 1.1622 28 8 -1.2926 -7.7918 0.8858 29 8 -1.7651 -9.9254 1.2142 30 1 -0.4850 0.8401 -0.0004 31 1 0.6240 -2.5567 -0.8904 32 1 0.6245 -2.5571 0.8896 33 1 2.8717 -3.6045 0.8895 34 1 2.8718 -3.6044 -0.8905 35 1 0.8537 -5.0446 -0.8914 36 1 0.8531 -5.0451 0.8886 37 1 2.6264 -6.2396 -2.0517 38 1 3.8000 -5.3072 -1.3310 39 1 1.4591 -7.3285 2.1175 40 1 0.1091 -10.5749 2.9836 41 1 0.4035 -8.9265 3.5872 42 1 2.6659 -8.0884 3.8587 43 1 5.0288 -8.6560 4.2561 44 1 5.8576 -10.9145 3.7314 45 1 4.3254 -12.6029 2.8013 46 1 1.9606 -12.0379 2.4118 47 1 -2.6921 -9.7276 1.0225 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335146546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:00 Heat of formation + Delta-G solvation = -150.356418 kcal Electronic energy + Delta-G solvation = -28608.122664 eV Core-core repulsion = 24560.574898 eV Total energy + Delta-G solvation = -4047.547767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.83 seconds Orbital eigenvalues (eV) -41.91424 -40.60174 -40.04446 -37.59645 -37.15985 -36.56055 -35.28344 -33.51570 -33.00290 -31.70412 -30.54637 -29.32571 -27.00448 -26.01518 -24.41844 -23.43455 -22.58757 -21.94303 -21.78105 -21.26435 -19.20352 -18.65016 -18.47012 -18.15340 -17.56114 -17.22386 -16.66058 -16.53449 -16.21288 -16.01454 -15.87136 -15.79583 -15.74443 -14.91443 -14.66841 -14.42289 -14.27503 -14.19901 -13.98133 -13.72924 -13.67657 -13.59280 -13.13639 -12.90830 -12.74057 -12.57241 -12.54698 -12.45612 -12.37907 -12.14609 -11.79950 -11.70207 -11.52076 -11.44822 -11.30386 -10.86480 -10.56547 -10.42704 -9.73663 -9.71294 -9.59142 -8.20689 -6.32767 0.44636 0.58078 1.10860 1.36203 1.39829 1.42929 1.50805 1.80527 2.26448 2.40502 2.91533 3.12445 3.56204 3.65486 3.74103 3.81542 3.90968 3.95925 4.06268 4.13896 4.22174 4.31165 4.37311 4.38730 4.49553 4.55922 4.69233 4.73687 4.80510 4.85433 4.98714 5.16204 5.19159 5.19288 5.22808 5.24029 5.50523 5.54226 5.63648 5.70855 5.71129 5.72130 5.83775 5.99975 6.18494 6.22109 6.35492 6.46563 6.85298 6.88797 7.09593 7.37162 8.91051 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.002602 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.614601 B =10758.446310 C =11835.633655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.024 3.976 10 C -0.092 4.092 11 C -0.132 4.132 12 C 0.087 3.913 13 H 0.127 0.873 14 N -0.829 5.829 15 C 0.533 3.467 16 O -0.567 6.567 17 N -0.699 5.699 18 C 0.167 3.833 19 H 0.122 0.878 20 C -0.071 4.071 21 C -0.094 4.094 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.122 4.122 27 C 0.466 3.534 28 O -0.543 6.543 29 O -0.504 6.504 30 H 0.263 0.737 31 H -0.020 1.020 32 H -0.011 1.011 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.040 0.960 36 H 0.065 0.935 37 H 0.344 0.656 38 H 0.358 0.642 39 H 0.418 0.582 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 -26.605 10.428 29.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.130 4.130 11 C -0.172 4.172 12 C -0.028 4.028 13 H 0.145 0.855 14 N -0.361 5.361 15 C 0.320 3.680 16 O -0.444 6.444 17 N -0.353 5.353 18 C 0.059 3.941 19 H 0.140 0.860 20 C -0.108 4.108 21 C -0.094 4.094 22 C -0.138 4.138 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.140 4.140 27 C 0.307 3.693 28 O -0.432 6.432 29 O -0.317 6.317 30 H 0.071 0.929 31 H -0.001 1.001 32 H 0.007 0.993 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.157 0.843 38 H 0.174 0.826 39 H 0.255 0.745 40 H 0.141 0.859 41 H 0.117 0.883 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.156 0.844 47 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 5.815 -27.433 10.011 29.776 hybrid contribution -1.346 2.417 -0.331 2.787 sum 4.469 -25.015 9.680 27.193 Atomic orbital electron populations 1.70118 1.08018 1.27811 1.51778 1.26049 0.95731 1.03620 0.94770 0.85479 0.78213 0.77891 0.79350 1.19130 1.21162 1.18759 1.21699 0.93728 0.92160 1.50376 0.91579 1.18995 0.94482 0.93530 0.94338 1.21426 0.97839 0.92226 1.01506 1.22194 0.98235 0.94874 1.01922 1.21356 0.95019 0.89643 0.96789 0.85487 1.58726 1.27941 1.46316 1.03097 1.20845 0.77594 0.86930 0.82645 1.90641 1.58137 1.57482 1.38172 1.45631 1.56120 1.23254 1.10279 1.20481 0.83850 0.87861 1.01901 0.86034 1.20821 0.94557 1.04016 0.91428 1.19709 0.94969 0.94454 1.00227 1.21300 0.93827 0.99533 0.99161 1.21423 0.96082 0.97241 1.00059 1.21470 1.00608 0.93837 0.98990 1.21429 0.93805 1.00375 0.99217 1.21337 0.96423 0.96501 0.99727 1.24354 0.90739 0.82010 0.72184 1.90792 1.80014 1.27206 1.45229 1.84449 1.24813 1.40037 1.82388 0.92861 1.00115 0.99264 0.91352 0.92421 0.94129 0.91599 0.84318 0.82636 0.74455 0.85947 0.88283 0.84897 0.84837 0.84841 0.84587 0.84444 0.71051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.12 13.29 21.45 0.28 -57.84 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.22 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.42 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.09 -3.57 4.92 30.60 0.15 -3.42 16 11 C -0.13 -4.49 4.84 30.59 0.15 -4.34 16 12 C 0.09 2.39 3.21 44.17 0.14 2.53 16 13 H 0.13 2.81 8.14 -2.38 -0.02 2.79 16 14 N -0.83 -23.07 8.94 -171.81 -1.54 -24.60 16 15 C 0.53 15.38 6.91 87.66 0.61 15.98 16 16 O -0.57 -20.34 15.91 -3.05 -0.05 -20.39 16 17 N -0.70 -15.01 4.06 -446.09 -1.81 -16.82 16 18 C 0.17 3.09 2.47 44.25 0.11 3.20 16 19 H 0.12 2.48 7.58 -2.39 -0.02 2.46 16 20 C -0.07 -0.80 4.85 29.85 0.14 -0.66 16 21 C -0.09 -1.26 4.95 -19.86 -0.10 -1.36 16 22 C -0.12 -1.66 9.10 22.27 0.20 -1.46 16 23 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 24 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 25 C -0.13 -1.75 10.05 22.27 0.22 -1.52 16 26 C -0.12 -1.62 9.70 22.27 0.22 -1.41 16 27 C 0.47 10.34 7.66 71.24 0.55 10.88 16 28 O -0.54 -17.25 17.08 21.97 0.38 -16.88 16 29 O -0.50 -7.39 13.23 -51.48 -0.68 -8.07 16 30 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 31 H -0.02 -1.16 8.14 -2.38 -0.02 -1.17 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.06 2.12 6.87 -2.39 -0.02 2.10 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.34 10.38 8.58 -89.69 -0.77 9.61 16 38 H 0.36 9.09 7.55 -89.69 -0.68 8.41 16 39 H 0.42 7.02 7.82 -92.70 -0.73 6.30 16 40 H 0.12 0.97 7.94 -2.39 -0.02 0.95 16 41 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 42 H 0.13 1.42 7.57 -2.91 -0.02 1.40 16 43 H 0.13 1.50 8.06 -2.91 -0.02 1.48 16 44 H 0.13 1.37 8.06 -2.91 -0.02 1.34 16 45 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 46 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 47 H 0.43 3.31 9.10 -74.06 -0.67 2.64 16 Total: -1.00 -80.90 399.88 0.47 -80.43 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -1.82 Total: 31.51 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 3.68 Total: -13.58 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -3.06 Total: -99.26 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.35 Total: -45.34 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -80.90 0.47 -80.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335146546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.922 kcal (2) G-P(sol) polarization free energy of solvation -80.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.83 seconds