Wall clock time and date at job start Tue Mar 31 2020 23:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47105 * 300.00442 * 3 2 1 6 6 H 1.48501 * 109.47040 * 60.00031 * 3 2 1 7 7 C 1.37878 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00434 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46801 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46846 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46846 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47398 * 305.00335 * 12 11 10 14 14 N 1.46896 * 109.47053 * 65.00581 * 12 11 10 15 15 C 1.50703 * 109.46912 * 185.00257 * 12 11 10 16 16 O 1.21285 * 119.99889 * 260.00048 * 15 12 11 17 17 N 1.34769 * 119.99927 * 80.00142 * 15 12 11 18 18 C 1.46512 * 119.99934 * 180.02562 * 17 15 12 19 19 H 1.09000 * 109.46648 * 34.99650 * 18 17 15 20 20 C 1.53001 * 109.46940 * 155.00025 * 18 17 15 21 21 C 1.50693 * 109.47090 * 294.99939 * 20 18 17 22 22 C 1.38241 * 119.99686 * 269.73052 * 21 20 18 23 23 C 1.38240 * 119.99619 * 179.76851 * 22 21 20 24 24 C 1.38232 * 120.00092 * 0.50781 * 23 22 21 25 25 C 1.38239 * 119.99854 * 359.74403 * 24 23 22 26 26 C 1.38228 * 120.00486 * 90.00465 * 21 20 18 27 27 C 1.50698 * 109.46812 * 274.99920 * 18 17 15 28 28 O 1.20828 * 120.00141 * 359.97438 * 27 18 17 29 29 O 1.34229 * 120.00083 * 180.02562 * 27 18 17 30 30 H 0.97000 * 120.00271 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47083 * 59.99880 * 9 7 2 32 32 H 1.09001 * 109.47027 * 299.99956 * 9 7 2 33 33 H 1.09002 * 109.47069 * 60.00276 * 10 9 7 34 34 H 1.09001 * 109.47624 * 299.99995 * 10 9 7 35 35 H 1.09002 * 109.46824 * 60.00417 * 11 10 9 36 36 H 1.08991 * 109.47210 * 300.00501 * 11 10 9 37 37 H 1.00907 * 110.99811 * 296.03925 * 14 12 11 38 38 H 1.00900 * 111.00550 * 59.99664 * 14 12 11 39 39 H 0.96997 * 120.00417 * 359.97438 * 17 15 12 40 40 H 1.08995 * 109.46964 * 55.00279 * 20 18 17 41 41 H 1.08997 * 109.46443 * 174.99736 * 20 18 17 42 42 H 1.07995 * 120.00418 * 359.97438 * 22 21 20 43 43 H 1.07998 * 119.99832 * 180.22329 * 23 22 21 44 44 H 1.08004 * 120.00245 * 179.72577 * 24 23 22 45 45 H 1.08005 * 119.99637 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.99647 * 0.02562 * 26 21 20 47 47 H 0.96697 * 117.00036 * 180.02562 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0031 13 1 3.1575 -6.0428 -0.8459 14 7 3.2395 -6.1423 1.2510 15 6 1.7250 -7.4515 -0.1264 16 8 1.5142 -8.1256 0.8596 17 7 1.2890 -7.8665 -1.3322 18 6 0.5598 -9.1315 -1.4520 19 1 -0.0571 -9.2805 -0.5658 20 6 -0.3328 -9.0900 -2.6939 21 6 -1.3930 -8.0341 -2.5154 22 6 -2.6077 -8.3640 -1.9437 23 6 -3.5785 -7.3943 -1.7755 24 6 -3.3386 -6.0972 -2.1886 25 6 -2.1259 -5.7685 -2.7650 26 6 -1.1532 -6.7370 -2.9284 27 6 1.5421 -10.2675 -1.5771 28 8 2.7294 -10.0434 -1.5677 29 8 1.0981 -11.5283 -1.7000 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 2.8727 -3.6047 0.8877 34 1 2.8714 -3.6039 -0.8922 35 1 0.8527 -5.0447 -0.8905 36 1 0.8546 -5.0450 0.8894 37 1 3.8013 -5.3076 1.3267 38 1 2.6284 -6.2404 2.0479 39 1 1.4573 -7.3272 -2.1207 40 1 0.2726 -8.8529 -3.5687 41 1 -0.8072 -10.0615 -2.8329 42 1 -2.7970 -9.3785 -1.6254 43 1 -4.5261 -7.6512 -1.3256 44 1 -4.0987 -5.3405 -2.0613 45 1 -1.9386 -4.7550 -3.0881 46 1 -0.2060 -6.4803 -3.3794 47 1 1.7659 -12.2234 -1.7768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335146553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:59 Heat of formation + Delta-G solvation = -124.494128 kcal Electronic energy + Delta-G solvation = -28973.134683 eV Core-core repulsion = 24926.708390 eV Total energy + Delta-G solvation = -4046.426294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 10.71 seconds Orbital eigenvalues (eV) -41.00044 -39.59866 -39.26329 -36.54385 -36.08841 -35.53854 -33.37087 -32.66109 -31.24868 -30.99867 -29.69056 -27.75533 -25.67574 -25.00569 -22.88162 -22.65133 -21.67288 -21.07163 -20.31635 -20.12478 -18.35889 -17.55017 -17.27595 -16.81749 -16.36256 -16.29381 -15.78695 -15.22808 -15.15761 -14.92897 -14.64036 -14.52321 -14.42260 -13.78566 -13.67127 -13.52015 -13.26582 -13.18702 -12.91990 -12.51714 -12.40627 -12.11338 -11.99954 -11.84650 -11.71535 -11.35736 -11.22917 -11.11730 -10.85194 -10.83539 -10.72911 -10.57263 -9.88200 -9.79051 -9.45312 -9.39676 -9.13824 -9.00878 -8.86390 -8.46929 -8.39167 -6.04802 -4.07454 1.17437 1.30744 1.95800 2.34283 2.79800 3.14360 3.27547 3.35523 3.39398 3.64824 4.37061 4.41624 4.41907 4.55061 4.75220 4.84358 4.89378 4.90144 5.01669 5.08150 5.18760 5.24382 5.31298 5.32109 5.35737 5.41624 5.54930 5.76412 5.87932 5.92818 5.96109 6.10089 6.21786 6.25331 6.35709 6.41473 6.47168 6.56438 6.72978 6.88828 7.00991 7.13280 7.38079 7.61068 7.61911 7.62531 7.74050 7.94561 8.17567 8.36756 8.99853 9.57193 11.06308 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.003160 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.005292 B = 8858.331913 C =10792.861748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.109 4.109 11 C -0.145 4.145 12 C 0.079 3.921 13 H 0.101 0.899 14 N -0.829 5.829 15 C 0.536 3.464 16 O -0.530 6.530 17 N -0.711 5.711 18 C 0.166 3.834 19 H 0.128 0.872 20 C -0.080 4.080 21 C -0.090 4.090 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.110 4.110 26 C -0.108 4.108 27 C 0.464 3.536 28 O -0.499 6.499 29 O -0.517 6.517 30 H 0.260 0.740 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.352 0.648 38 H 0.349 0.651 39 H 0.407 0.593 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.127 0.873 46 H 0.120 0.880 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 -21.080 -7.913 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.185 4.185 12 C -0.037 4.037 13 H 0.119 0.881 14 N -0.362 5.362 15 C 0.323 3.677 16 O -0.404 6.404 17 N -0.365 5.365 18 C 0.058 3.942 19 H 0.146 0.854 20 C -0.118 4.118 21 C -0.090 4.090 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.134 4.134 25 C -0.128 4.128 26 C -0.127 4.127 27 C 0.304 3.696 28 O -0.385 6.385 29 O -0.328 6.328 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.243 0.757 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.145 0.855 46 H 0.138 0.862 47 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -4.475 -21.739 -7.413 23.400 hybrid contribution 0.406 1.673 -0.182 1.731 sum -4.068 -20.066 -7.595 21.838 Atomic orbital electron populations 1.69970 1.06047 1.26495 1.50884 1.25022 0.94841 0.99269 0.95295 0.86561 0.80164 0.83838 0.77601 1.19712 1.21017 1.21008 1.21290 0.93055 0.91076 1.50535 0.92653 1.19065 0.93874 0.91234 0.97174 1.21659 0.99138 0.93489 1.00384 1.22407 0.98220 0.95026 1.02861 1.21404 0.95448 0.90877 0.95930 0.88140 1.58657 1.28186 1.46136 1.03180 1.20795 0.77525 0.87174 0.82236 1.90658 1.55805 1.56879 1.37104 1.45717 1.58960 1.20963 1.10881 1.20324 0.90247 0.81199 1.02419 0.85446 1.20806 0.95284 0.99989 0.95706 1.19546 0.94770 0.94297 1.00432 1.21009 0.93262 0.99564 0.99448 1.21142 0.99286 0.93363 0.99922 1.21248 0.97524 0.96490 0.98144 1.21265 0.93461 0.99679 0.98368 1.21024 0.99199 0.92422 1.00007 1.24123 0.89598 0.83793 0.72134 1.90752 1.18294 1.84708 1.44697 1.84507 1.45619 1.17669 1.85032 0.93062 0.96632 0.96750 0.93353 0.93033 0.91485 0.91774 0.83246 0.83769 0.75745 0.89623 0.87920 0.86042 0.86111 0.85955 0.85463 0.86169 0.73129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.06 4.92 -26.73 -0.13 -2.19 16 11 C -0.15 -2.29 4.84 -26.73 -0.13 -2.42 16 12 C 0.08 1.12 3.21 -68.87 -0.22 0.90 16 13 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 14 N -0.83 -12.22 8.94 -5.65 -0.05 -12.27 16 15 C 0.54 7.92 6.91 -10.99 -0.08 7.84 16 16 O -0.53 -9.53 15.91 5.55 0.09 -9.44 16 17 N -0.71 -8.06 4.06 -54.93 -0.22 -8.28 16 18 C 0.17 1.66 2.47 -69.08 -0.17 1.49 16 19 H 0.13 1.41 7.58 -51.93 -0.39 1.02 16 20 C -0.08 -0.58 4.86 -27.89 -0.14 -0.71 16 21 C -0.09 -0.81 4.95 -104.63 -0.52 -1.33 16 22 C -0.11 -1.04 9.70 -39.58 -0.38 -1.42 16 23 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.11 -1.21 10.05 -39.58 -0.40 -1.61 16 26 C -0.11 -1.07 9.10 -39.59 -0.36 -1.43 16 27 C 0.46 5.06 7.66 36.00 0.28 5.34 16 28 O -0.50 -7.26 17.08 -18.75 -0.32 -7.59 16 29 O -0.52 -3.93 13.23 -39.25 -0.52 -4.45 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.89 6.87 -51.93 -0.36 0.54 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.35 4.83 7.55 -39.29 -0.30 4.53 16 38 H 0.35 5.26 8.58 -39.29 -0.34 4.92 16 39 H 0.41 3.77 7.82 -40.82 -0.32 3.45 16 40 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 41 H 0.10 0.59 7.94 -51.93 -0.41 0.17 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 45 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 46 H 0.12 0.98 7.57 -52.49 -0.40 0.59 16 47 H 0.41 1.55 9.10 45.56 0.41 1.97 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -35.80 399.88 -9.16 -44.97 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -6.29 Total: 11.83 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -3.59 Total: -11.45 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.46 Total: -46.18 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.75 Total: -21.48 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.80 -9.16 -44.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335146553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.529 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.71 seconds