Wall clock time and date at job start Tue Mar 31 2020 23:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00064 * 2 1 4 4 H 1.48500 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47105 * 300.00442 * 3 2 1 6 6 H 1.48501 * 109.47040 * 60.00031 * 3 2 1 7 7 C 1.37878 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00434 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99680 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46801 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46846 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46846 * 179.97438 * 11 10 9 13 13 H 1.09002 * 109.47398 * 305.00335 * 12 11 10 14 14 N 1.46896 * 109.47053 * 65.00581 * 12 11 10 15 15 C 1.50703 * 109.46912 * 185.00257 * 12 11 10 16 16 O 1.21285 * 119.99889 * 260.00048 * 15 12 11 17 17 N 1.34769 * 119.99927 * 80.00142 * 15 12 11 18 18 C 1.46512 * 119.99934 * 180.02562 * 17 15 12 19 19 H 1.09000 * 109.46648 * 34.99650 * 18 17 15 20 20 C 1.53001 * 109.46940 * 155.00025 * 18 17 15 21 21 C 1.50693 * 109.47090 * 294.99939 * 20 18 17 22 22 C 1.38241 * 119.99686 * 269.73052 * 21 20 18 23 23 C 1.38240 * 119.99619 * 179.76851 * 22 21 20 24 24 C 1.38232 * 120.00092 * 0.50781 * 23 22 21 25 25 C 1.38239 * 119.99854 * 359.74403 * 24 23 22 26 26 C 1.38228 * 120.00486 * 90.00465 * 21 20 18 27 27 C 1.50698 * 109.46812 * 274.99920 * 18 17 15 28 28 O 1.20828 * 120.00141 * 359.97438 * 27 18 17 29 29 O 1.34229 * 120.00083 * 180.02562 * 27 18 17 30 30 H 0.97000 * 120.00271 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47083 * 59.99880 * 9 7 2 32 32 H 1.09001 * 109.47027 * 299.99956 * 9 7 2 33 33 H 1.09002 * 109.47069 * 60.00276 * 10 9 7 34 34 H 1.09001 * 109.47624 * 299.99995 * 10 9 7 35 35 H 1.09002 * 109.46824 * 60.00417 * 11 10 9 36 36 H 1.08991 * 109.47210 * 300.00501 * 11 10 9 37 37 H 1.00907 * 110.99811 * 296.03925 * 14 12 11 38 38 H 1.00900 * 111.00550 * 59.99664 * 14 12 11 39 39 H 0.96997 * 120.00417 * 359.97438 * 17 15 12 40 40 H 1.08995 * 109.46964 * 55.00279 * 20 18 17 41 41 H 1.08997 * 109.46443 * 174.99736 * 20 18 17 42 42 H 1.07995 * 120.00418 * 359.97438 * 22 21 20 43 43 H 1.07998 * 119.99832 * 180.22329 * 23 22 21 44 44 H 1.08004 * 120.00245 * 179.72577 * 24 23 22 45 45 H 1.08005 * 119.99637 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.99647 * 0.02562 * 26 21 20 47 47 H 0.96697 * 117.00036 * 180.02562 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0031 13 1 3.1575 -6.0428 -0.8459 14 7 3.2395 -6.1423 1.2510 15 6 1.7250 -7.4515 -0.1264 16 8 1.5142 -8.1256 0.8596 17 7 1.2890 -7.8665 -1.3322 18 6 0.5598 -9.1315 -1.4520 19 1 -0.0571 -9.2805 -0.5658 20 6 -0.3328 -9.0900 -2.6939 21 6 -1.3930 -8.0341 -2.5154 22 6 -2.6077 -8.3640 -1.9437 23 6 -3.5785 -7.3943 -1.7755 24 6 -3.3386 -6.0972 -2.1886 25 6 -2.1259 -5.7685 -2.7650 26 6 -1.1532 -6.7370 -2.9284 27 6 1.5421 -10.2675 -1.5771 28 8 2.7294 -10.0434 -1.5677 29 8 1.0981 -11.5283 -1.7000 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 2.8727 -3.6047 0.8877 34 1 2.8714 -3.6039 -0.8922 35 1 0.8527 -5.0447 -0.8905 36 1 0.8546 -5.0450 0.8894 37 1 3.8013 -5.3076 1.3267 38 1 2.6284 -6.2404 2.0479 39 1 1.4573 -7.3272 -2.1207 40 1 0.2726 -8.8529 -3.5687 41 1 -0.8072 -10.0615 -2.8329 42 1 -2.7970 -9.3785 -1.6254 43 1 -4.5261 -7.6512 -1.3256 44 1 -4.0987 -5.3405 -2.0613 45 1 -1.9386 -4.7550 -3.0881 46 1 -0.2060 -6.4803 -3.3794 47 1 1.7659 -12.2234 -1.7768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335146553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:43 Heat of formation + Delta-G solvation = -149.751529 kcal Electronic energy + Delta-G solvation = -28974.229926 eV Core-core repulsion = 24926.708390 eV Total energy + Delta-G solvation = -4047.521537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.89495 -40.58934 -40.06155 -37.58737 -37.12386 -36.54815 -35.26820 -33.52282 -32.98686 -31.73356 -30.55771 -29.30298 -26.99650 -25.99721 -24.40484 -23.45968 -22.58137 -21.92330 -21.76147 -21.28360 -19.16433 -18.63275 -18.44829 -18.14823 -17.58208 -17.25116 -16.63016 -16.51860 -16.19911 -16.01245 -15.94082 -15.79441 -15.63305 -14.95108 -14.65967 -14.41957 -14.26589 -14.23739 -13.98777 -13.71519 -13.64799 -13.58291 -13.15725 -12.93460 -12.72325 -12.57044 -12.52273 -12.39139 -12.36194 -12.14822 -11.82487 -11.69860 -11.49953 -11.43745 -11.25374 -10.84786 -10.55591 -10.42231 -9.76951 -9.68458 -9.61298 -8.19652 -6.30316 0.42009 0.55225 1.12939 1.38212 1.39610 1.40831 1.53244 1.80234 2.29412 2.40986 2.89025 3.13927 3.56264 3.65480 3.74141 3.82341 3.91955 3.98782 4.06939 4.13474 4.19148 4.31705 4.35139 4.41048 4.49847 4.57384 4.66447 4.77335 4.79872 4.84602 5.02051 5.16936 5.17339 5.19735 5.22118 5.24802 5.53261 5.56201 5.60859 5.68258 5.70471 5.74717 5.86385 6.02226 6.15679 6.25226 6.36884 6.47458 6.87528 6.92200 7.10709 7.39264 8.91910 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.003160 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.005292 B = 8858.331913 C =10792.861748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.095 4.095 11 C -0.130 4.130 12 C 0.085 3.915 13 H 0.119 0.881 14 N -0.833 5.833 15 C 0.533 3.467 16 O -0.566 6.566 17 N -0.699 5.699 18 C 0.164 3.836 19 H 0.119 0.881 20 C -0.069 4.069 21 C -0.091 4.091 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.116 4.116 27 C 0.472 3.528 28 O -0.540 6.540 29 O -0.504 6.504 30 H 0.262 0.738 31 H -0.006 1.006 32 H -0.017 1.017 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.357 0.643 38 H 0.345 0.655 39 H 0.418 0.582 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.137 0.863 44 H 0.124 0.876 45 H 0.118 0.882 46 H 0.135 0.865 47 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.624 -22.317 -8.906 24.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.133 4.133 11 C -0.170 4.170 12 C -0.030 4.030 13 H 0.137 0.863 14 N -0.366 5.366 15 C 0.320 3.680 16 O -0.444 6.444 17 N -0.353 5.353 18 C 0.056 3.944 19 H 0.137 0.863 20 C -0.106 4.106 21 C -0.091 4.091 22 C -0.136 4.136 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.152 4.152 26 C -0.134 4.134 27 C 0.313 3.687 28 O -0.429 6.429 29 O -0.317 6.317 30 H 0.071 0.929 31 H 0.013 0.987 32 H 0.002 0.998 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.173 0.827 38 H 0.159 0.841 39 H 0.256 0.744 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.163 0.837 43 H 0.155 0.845 44 H 0.142 0.858 45 H 0.136 0.864 46 H 0.153 0.847 47 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -3.509 -23.006 -8.449 24.759 hybrid contribution 0.036 1.979 0.118 1.983 sum -3.473 -21.027 -8.331 22.882 Atomic orbital electron populations 1.70099 1.07742 1.27566 1.51877 1.25946 0.95713 1.03244 0.94886 0.85461 0.79240 0.79080 0.77657 1.18476 1.20415 1.20716 1.21752 0.93606 0.92371 1.50119 0.92040 1.18966 0.94353 0.93059 0.94624 1.21442 0.97980 0.92666 1.01206 1.22190 0.98101 0.94220 1.02453 1.21366 0.95139 0.90065 0.96434 0.86319 1.58677 1.28209 1.46421 1.03259 1.20821 0.77367 0.87063 0.82729 1.90640 1.57360 1.57938 1.38471 1.45623 1.57888 1.21572 1.10248 1.20467 0.90124 0.80341 1.03432 0.86330 1.20822 0.94437 1.00562 0.94778 1.19739 0.95277 0.94311 0.99810 1.21365 0.93039 1.00544 0.98689 1.21413 1.00368 0.93045 0.99829 1.21428 0.97688 0.97391 0.98821 1.21373 0.94400 0.99860 0.99615 1.21248 0.99471 0.92672 1.00049 1.24127 0.88852 0.84727 0.71010 1.90746 1.19879 1.85436 1.46867 1.84458 1.46068 1.17028 1.84107 0.92898 0.98730 0.99821 0.92822 0.91805 0.90739 0.93442 0.82687 0.84127 0.74442 0.87882 0.85587 0.83721 0.84473 0.85834 0.86391 0.84741 0.70938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.54 -29.92 9.11 25.60 0.23 -29.69 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.10 -3.55 4.92 30.60 0.15 -3.40 16 11 C -0.13 -4.05 4.84 30.60 0.15 -3.90 16 12 C 0.09 2.34 3.21 44.17 0.14 2.48 16 13 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 14 N -0.83 -23.86 8.94 -171.80 -1.54 -25.40 16 15 C 0.53 15.27 6.91 87.66 0.61 15.87 16 16 O -0.57 -20.17 15.91 -3.05 -0.05 -20.22 16 17 N -0.70 -14.76 4.06 -446.08 -1.81 -16.57 16 18 C 0.16 2.93 2.47 44.24 0.11 3.04 16 19 H 0.12 2.43 7.58 -2.39 -0.02 2.41 16 20 C -0.07 -0.78 4.86 29.85 0.14 -0.64 16 21 C -0.09 -1.47 4.95 -19.87 -0.10 -1.56 16 22 C -0.12 -1.93 9.70 22.27 0.22 -1.72 16 23 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 24 C -0.14 -2.95 10.05 22.27 0.22 -2.73 16 25 C -0.13 -3.05 10.05 22.27 0.22 -2.83 16 26 C -0.12 -2.19 9.10 22.27 0.20 -1.99 16 27 C 0.47 9.28 7.66 71.24 0.55 9.82 16 28 O -0.54 -14.92 17.08 21.96 0.38 -14.54 16 29 O -0.50 -6.20 13.23 -51.41 -0.68 -6.88 16 30 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 31 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 32 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H 0.05 1.94 6.87 -2.39 -0.02 1.92 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.36 9.39 7.55 -89.69 -0.68 8.71 16 38 H 0.35 10.37 8.58 -89.69 -0.77 9.60 16 39 H 0.42 6.88 7.82 -92.71 -0.73 6.15 16 40 H 0.10 0.88 8.09 -2.39 -0.02 0.86 16 41 H 0.13 0.93 7.94 -2.39 -0.02 0.91 16 42 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 44 H 0.12 2.50 8.06 -2.91 -0.02 2.47 16 45 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 46 H 0.13 2.01 7.57 -2.91 -0.02 1.99 16 47 H 0.43 2.02 9.10 -74.06 -0.67 1.34 16 Total: -1.00 -78.10 399.88 0.47 -77.63 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: -1.82 Total: 33.47 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 3.68 Total: -17.43 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -3.06 Total: -97.68 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.35 Total: -41.65 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -78.10 0.47 -77.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335146553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.117 kcal (2) G-P(sol) polarization free energy of solvation -78.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds