Wall clock time and date at job start Tue Mar 31 2020 22:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00026 * 2 1 4 4 H 1.48501 * 109.47121 * 239.99922 * 3 2 1 5 5 H 1.48506 * 109.46785 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47368 * 119.99658 * 3 2 1 7 7 C 1.37874 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47260 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47260 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.46704 * 304.99761 * 12 11 10 14 14 N 1.46895 * 109.47273 * 64.99409 * 12 11 10 15 15 C 1.50701 * 109.47109 * 185.00206 * 12 11 10 16 16 O 1.21285 * 119.99318 * 259.99528 * 15 12 11 17 17 N 1.34768 * 120.00392 * 79.99427 * 15 12 11 18 18 C 1.46496 * 120.00061 * 179.97438 * 17 15 12 19 19 C 1.50707 * 109.47291 * 180.02562 * 18 17 15 20 20 C 1.38241 * 119.96721 * 260.00414 * 19 18 17 21 21 C 1.38211 * 120.11477 * 179.97438 * 20 19 18 22 22 C 1.38241 * 120.11123 * 0.34633 * 21 20 19 23 23 C 1.38662 * 120.06102 * 359.49040 * 22 21 20 24 24 C 1.38657 * 119.96522 * 80.02188 * 19 18 17 25 25 O 1.36099 * 119.41018 * 359.62999 * 24 19 18 26 26 C 1.43174 * 116.71643 * 162.89767 * 25 24 19 27 27 C 1.53469 * 108.26339 * 46.18543 * 26 25 24 28 28 O 1.36113 * 119.39119 * 179.97438 * 23 22 21 29 29 H 0.96993 * 119.99932 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47119 * 59.99832 * 9 7 2 31 31 H 1.09003 * 109.47014 * 300.00261 * 9 7 2 32 32 H 1.08998 * 109.47513 * 59.99540 * 10 9 7 33 33 H 1.09001 * 109.46810 * 299.99720 * 10 9 7 34 34 H 1.09004 * 109.46803 * 59.99686 * 11 10 9 35 35 H 1.09003 * 109.46957 * 300.00061 * 11 10 9 36 36 H 1.00904 * 110.99990 * 60.00703 * 14 12 11 37 37 H 1.00899 * 111.00374 * 183.95179 * 14 12 11 38 38 H 0.97006 * 120.00124 * 0.02562 * 17 15 12 39 39 H 1.09000 * 109.46952 * 60.00751 * 18 17 15 40 40 H 1.08996 * 109.47656 * 300.00450 * 18 17 15 41 41 H 1.08006 * 119.94210 * 0.02562 * 20 19 18 42 42 H 1.08002 * 119.94054 * 180.02562 * 21 20 19 43 43 H 1.07998 * 119.96495 * 179.70446 * 22 21 20 44 44 H 1.08997 * 109.70588 * 286.48794 * 26 25 24 45 45 H 1.09000 * 109.73826 * 165.89817 * 26 25 24 46 46 H 1.09004 * 109.70578 * 180.60152 * 27 26 25 47 47 H 1.08993 * 109.74462 * 59.98914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0031 13 1 3.1600 -6.0433 -0.8378 14 7 3.2360 -6.1412 1.2594 15 6 1.7255 -7.4516 -0.1214 16 8 1.5119 -8.1249 0.8645 17 7 1.2930 -7.8675 -1.3281 18 6 0.5652 -9.1331 -1.4492 19 6 0.1971 -9.3650 -2.8921 20 6 -1.0820 -9.0806 -3.3327 21 6 -1.4227 -9.2916 -4.6555 22 6 -0.4876 -9.7945 -5.5408 23 6 0.7981 -10.0786 -5.1060 24 6 1.1417 -9.8637 -3.7762 25 8 2.3990 -10.1321 -3.3297 26 6 3.2077 -10.9787 -4.1539 27 6 3.0847 -10.4962 -5.6056 28 8 1.7078 -10.5737 -5.9892 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8714 -3.6039 0.8922 33 1 2.8727 -3.6046 -0.8877 34 1 0.8547 -5.0449 -0.8895 35 1 0.8528 -5.0447 0.8905 36 1 2.6226 -6.2388 2.0546 37 1 3.9437 -6.8604 1.2584 38 1 1.4642 -7.3291 -2.1167 39 1 -0.3411 -9.0902 -0.8451 40 1 1.1964 -9.9501 -1.0998 41 1 -1.8161 -8.6921 -2.6423 42 1 -2.4227 -9.0681 -4.9968 43 1 -0.7577 -9.9629 -6.5727 44 1 2.8581 -12.0083 -4.0779 45 1 4.2479 -10.9193 -3.8337 46 1 3.6843 -11.1326 -6.2565 47 1 3.4289 -9.4648 -5.6812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341240786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:07 Heat of formation + Delta-G solvation = -102.175654 kcal Electronic energy + Delta-G solvation = -28267.549649 eV Core-core repulsion = 24222.091157 eV Total energy + Delta-G solvation = -4045.458492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71723 -39.89796 -38.32129 -37.69954 -35.73992 -34.89869 -33.29185 -31.64496 -31.49758 -31.30387 -28.82326 -28.08340 -26.73510 -25.21002 -24.58271 -22.48933 -21.76192 -21.41983 -20.15951 -19.95555 -18.99428 -17.84041 -17.65593 -16.92571 -16.47310 -16.21899 -15.78890 -15.61850 -15.51178 -15.10749 -14.99743 -14.73154 -14.45557 -14.40670 -14.16092 -13.89601 -13.75143 -13.14452 -12.96977 -12.73398 -12.35371 -12.24335 -12.13185 -11.73658 -11.58455 -11.52203 -11.41857 -11.09485 -10.84922 -10.69693 -10.61214 -10.38803 -10.18075 -9.56682 -9.20420 -9.13844 -9.05466 -8.98826 -8.49512 -8.44545 -8.26443 -5.92500 -3.94033 0.77298 0.92920 2.58051 2.66062 2.79393 3.08170 3.38319 3.42168 3.45215 3.51662 3.73927 4.10871 4.34035 4.41919 4.51459 4.52387 4.66901 4.69235 4.76315 4.89827 4.93750 4.98648 5.08451 5.21123 5.27044 5.37641 5.43113 5.47653 5.62109 5.69927 5.87356 5.99278 6.09408 6.17774 6.23557 6.33615 6.47885 6.49673 6.86719 6.97428 7.05704 7.15747 7.28707 7.48278 7.57477 7.77908 7.94257 8.09449 8.20380 8.52793 9.13483 9.69467 11.18966 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.002284 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.312509 B =12253.925422 C =12880.479605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.100 4.100 11 C -0.103 4.103 12 C 0.079 3.921 13 H 0.099 0.901 14 N -0.811 5.811 15 C 0.484 3.516 16 O -0.553 6.553 17 N -0.720 5.720 18 C 0.170 3.830 19 C -0.103 4.103 20 C -0.095 4.095 21 C -0.115 4.115 22 C -0.107 4.107 23 C 0.046 3.954 24 C 0.067 3.933 25 O -0.299 6.299 26 C 0.019 3.981 27 C 0.020 3.980 28 O -0.308 6.308 29 H 0.260 0.740 30 H 0.012 0.988 31 H 0.014 0.986 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.350 0.650 37 H 0.337 0.663 38 H 0.403 0.597 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.077 0.923 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.531 -26.701 -12.639 29.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.137 4.137 11 C -0.141 4.141 12 C -0.037 4.037 13 H 0.117 0.883 14 N -0.339 5.339 15 C 0.269 3.731 16 O -0.430 6.430 17 N -0.372 5.372 18 C 0.046 3.954 19 C -0.105 4.105 20 C -0.114 4.114 21 C -0.133 4.133 22 C -0.126 4.126 23 C 0.001 3.999 24 C 0.021 3.979 25 O -0.213 6.213 26 C -0.056 4.056 27 C -0.055 4.055 28 O -0.222 6.222 29 H 0.069 0.931 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.164 0.836 37 H 0.149 0.851 38 H 0.237 0.763 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.095 0.905 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.525 -26.346 -12.115 29.108 hybrid contribution 0.296 0.016 -0.491 0.574 sum 2.821 -26.330 -12.606 29.328 Atomic orbital electron populations 1.69957 1.06042 1.26547 1.51215 1.25029 0.94829 0.99186 0.95522 0.86679 0.79580 0.83261 0.78596 1.20311 1.21393 1.20248 1.21252 0.93038 0.91140 1.50062 0.92730 1.19115 0.94104 0.91608 0.96909 1.21536 0.98758 0.92340 1.01110 1.21647 0.96542 0.94008 1.01949 1.21745 0.95854 0.90904 0.95223 0.88323 1.59053 1.17367 1.54196 1.03324 1.22524 0.79106 0.88862 0.82599 1.90664 1.57717 1.57549 1.37104 1.46140 1.57907 1.22947 1.10232 1.19959 0.97151 0.87218 0.91025 1.19264 0.92451 1.03905 0.94841 1.20984 0.94975 0.99150 0.96285 1.20953 0.99649 0.99784 0.92934 1.20514 0.90571 1.00555 1.00923 1.18873 0.91415 1.02134 0.87460 1.18711 0.85979 1.02138 0.91068 1.86390 1.22032 1.65595 1.47256 1.23656 0.97081 0.94206 0.90669 1.23645 0.81428 1.03659 0.96802 1.86311 1.15601 1.77900 1.42420 0.93072 0.96979 0.96787 0.91844 0.93751 0.91928 0.91924 0.83603 0.85087 0.76295 0.90555 0.90609 0.84560 0.84618 0.84670 0.90468 0.85922 0.85998 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.93 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.10 -2.07 5.04 -26.73 -0.13 -2.20 16 11 C -0.10 -1.75 4.84 -26.73 -0.13 -1.88 16 12 C 0.08 1.11 3.15 -68.87 -0.22 0.90 16 13 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 14 N -0.81 -11.50 8.44 -5.66 -0.05 -11.55 16 15 C 0.48 6.88 7.07 -10.99 -0.08 6.80 16 16 O -0.55 -9.47 16.25 5.55 0.09 -9.38 16 17 N -0.72 -8.52 5.55 -61.47 -0.34 -8.86 16 18 C 0.17 1.89 5.44 -5.19 -0.03 1.86 16 19 C -0.10 -1.03 5.26 -104.46 -0.55 -1.58 16 20 C -0.10 -0.82 9.66 -39.59 -0.38 -1.20 16 21 C -0.12 -0.89 10.04 -39.59 -0.40 -1.29 16 22 C -0.11 -0.91 9.96 -39.42 -0.39 -1.30 16 23 C 0.05 0.45 6.49 -39.14 -0.25 0.20 16 24 C 0.07 0.68 6.47 -39.14 -0.25 0.43 16 25 O -0.30 -2.91 9.60 -32.83 -0.32 -3.23 16 26 C 0.02 0.12 7.26 37.40 0.27 0.39 16 27 C 0.02 0.12 7.26 37.40 0.27 0.39 16 28 O -0.31 -2.79 10.42 -32.88 -0.34 -3.13 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 1.36 7.75 -51.93 -0.40 0.96 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.35 5.14 8.58 -39.29 -0.34 4.81 16 37 H 0.34 4.17 9.06 -39.29 -0.36 3.82 16 38 H 0.40 4.29 8.46 -40.82 -0.35 3.94 16 39 H 0.08 0.85 8.00 -51.93 -0.42 0.44 16 40 H 0.08 0.92 7.83 -51.93 -0.41 0.51 16 41 H 0.14 1.00 8.03 -52.48 -0.42 0.58 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -34.99 393.19 -9.44 -44.43 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -7.30 Total: 7.36 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -2.82 Total: -11.85 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.35 Total: -47.14 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.57 Total: -15.74 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.99 -9.44 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341240786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.745 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds