Wall clock time and date at job start Tue Mar 31 2020 22:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00026 * 2 1 4 4 H 1.48501 * 109.47121 * 239.99922 * 3 2 1 5 5 H 1.48506 * 109.46785 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47368 * 119.99658 * 3 2 1 7 7 C 1.37874 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47260 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47260 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.46704 * 304.99761 * 12 11 10 14 14 N 1.46895 * 109.47273 * 64.99409 * 12 11 10 15 15 C 1.50701 * 109.47109 * 185.00206 * 12 11 10 16 16 O 1.21285 * 119.99318 * 259.99528 * 15 12 11 17 17 N 1.34768 * 120.00392 * 79.99427 * 15 12 11 18 18 C 1.46496 * 120.00061 * 179.97438 * 17 15 12 19 19 C 1.50707 * 109.47291 * 180.02562 * 18 17 15 20 20 C 1.38241 * 119.96721 * 260.00414 * 19 18 17 21 21 C 1.38211 * 120.11477 * 179.97438 * 20 19 18 22 22 C 1.38241 * 120.11123 * 0.34633 * 21 20 19 23 23 C 1.38662 * 120.06102 * 359.49040 * 22 21 20 24 24 C 1.38657 * 119.96522 * 80.02188 * 19 18 17 25 25 O 1.36099 * 119.41018 * 359.62999 * 24 19 18 26 26 C 1.43174 * 116.71643 * 162.89767 * 25 24 19 27 27 C 1.53469 * 108.26339 * 46.18543 * 26 25 24 28 28 O 1.36113 * 119.39119 * 179.97438 * 23 22 21 29 29 H 0.96993 * 119.99932 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47119 * 59.99832 * 9 7 2 31 31 H 1.09003 * 109.47014 * 300.00261 * 9 7 2 32 32 H 1.08998 * 109.47513 * 59.99540 * 10 9 7 33 33 H 1.09001 * 109.46810 * 299.99720 * 10 9 7 34 34 H 1.09004 * 109.46803 * 59.99686 * 11 10 9 35 35 H 1.09003 * 109.46957 * 300.00061 * 11 10 9 36 36 H 1.00904 * 110.99990 * 60.00703 * 14 12 11 37 37 H 1.00899 * 111.00374 * 183.95179 * 14 12 11 38 38 H 0.97006 * 120.00124 * 0.02562 * 17 15 12 39 39 H 1.09000 * 109.46952 * 60.00751 * 18 17 15 40 40 H 1.08996 * 109.47656 * 300.00450 * 18 17 15 41 41 H 1.08006 * 119.94210 * 0.02562 * 20 19 18 42 42 H 1.08002 * 119.94054 * 180.02562 * 21 20 19 43 43 H 1.07998 * 119.96495 * 179.70446 * 22 21 20 44 44 H 1.08997 * 109.70588 * 286.48794 * 26 25 24 45 45 H 1.09000 * 109.73826 * 165.89817 * 26 25 24 46 46 H 1.09004 * 109.70578 * 180.60152 * 27 26 25 47 47 H 1.08993 * 109.74462 * 59.98914 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0031 13 1 3.1600 -6.0433 -0.8378 14 7 3.2360 -6.1412 1.2594 15 6 1.7255 -7.4516 -0.1214 16 8 1.5119 -8.1249 0.8645 17 7 1.2930 -7.8675 -1.3281 18 6 0.5652 -9.1331 -1.4492 19 6 0.1971 -9.3650 -2.8921 20 6 -1.0820 -9.0806 -3.3327 21 6 -1.4227 -9.2916 -4.6555 22 6 -0.4876 -9.7945 -5.5408 23 6 0.7981 -10.0786 -5.1060 24 6 1.1417 -9.8637 -3.7762 25 8 2.3990 -10.1321 -3.3297 26 6 3.2077 -10.9787 -4.1539 27 6 3.0847 -10.4962 -5.6056 28 8 1.7078 -10.5737 -5.9892 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8714 -3.6039 0.8922 33 1 2.8727 -3.6046 -0.8877 34 1 0.8547 -5.0449 -0.8895 35 1 0.8528 -5.0447 0.8905 36 1 2.6226 -6.2388 2.0546 37 1 3.9437 -6.8604 1.2584 38 1 1.4642 -7.3291 -2.1167 39 1 -0.3411 -9.0902 -0.8451 40 1 1.1964 -9.9501 -1.0998 41 1 -1.8161 -8.6921 -2.6423 42 1 -2.4227 -9.0681 -4.9968 43 1 -0.7577 -9.9629 -6.5727 44 1 2.8581 -12.0083 -4.0779 45 1 4.2479 -10.9193 -3.8337 46 1 3.6843 -11.1326 -6.2565 47 1 3.4289 -9.4648 -5.6812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341240786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:04 Heat of formation + Delta-G solvation = -127.245507 kcal Electronic energy + Delta-G solvation = -28268.636760 eV Core-core repulsion = 24222.091157 eV Total energy + Delta-G solvation = -4046.545602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -42.34013 -41.02133 -38.99923 -38.32853 -37.15903 -35.91691 -35.21787 -33.11053 -32.29565 -32.17470 -29.62089 -29.41711 -27.90582 -26.20768 -25.69318 -23.99965 -22.61339 -21.98121 -21.75507 -21.23898 -19.64047 -18.53563 -18.42694 -18.41370 -17.87466 -17.42184 -16.87783 -16.46750 -16.38245 -16.24785 -15.93998 -15.68251 -15.57501 -15.34847 -15.09330 -15.00642 -14.58167 -14.46717 -14.23048 -13.79135 -13.69698 -13.59468 -13.07478 -12.87754 -12.82499 -12.74930 -12.46598 -12.39495 -12.19312 -12.15547 -12.02382 -11.53064 -11.44633 -11.37221 -11.22981 -10.95600 -10.50270 -10.17524 -9.85391 -9.51812 -9.12472 -8.15758 -6.26273 0.08376 0.27804 1.41846 1.45362 1.50538 1.53191 2.00864 2.18372 2.27558 2.44480 2.72954 3.17098 3.18715 3.51372 3.53100 3.77419 3.85348 3.91558 3.92661 4.02348 4.17061 4.17682 4.25916 4.30129 4.43762 4.53889 4.55712 4.56995 4.65115 4.70921 4.83622 4.94423 5.07999 5.15211 5.21227 5.27518 5.32903 5.35934 5.44822 5.61761 5.64228 5.85859 5.87792 5.94968 6.04294 6.31880 6.34580 6.43021 6.50858 6.91298 7.11778 7.42610 8.95918 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012940 B = 0.002284 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.312509 B =12253.925422 C =12880.479605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.084 4.084 11 C -0.094 4.094 12 C 0.089 3.911 13 H 0.119 0.881 14 N -0.817 5.817 15 C 0.487 3.513 16 O -0.583 6.583 17 N -0.707 5.707 18 C 0.175 3.825 19 C -0.116 4.116 20 C -0.100 4.100 21 C -0.112 4.112 22 C -0.112 4.112 23 C 0.032 3.968 24 C 0.056 3.944 25 O -0.319 6.319 26 C 0.014 3.986 27 C 0.017 3.983 28 O -0.321 6.321 29 H 0.263 0.737 30 H -0.008 1.008 31 H -0.016 1.016 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.346 0.654 37 H 0.349 0.651 38 H 0.410 0.590 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.147 0.853 42 H 0.161 0.839 43 H 0.151 0.849 44 H 0.080 0.920 45 H 0.147 0.853 46 H 0.153 0.847 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.658 -26.892 -14.010 30.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.579 4.579 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.121 4.121 11 C -0.132 4.132 12 C -0.027 4.027 13 H 0.137 0.863 14 N -0.346 5.346 15 C 0.272 3.728 16 O -0.464 6.464 17 N -0.359 5.359 18 C 0.052 3.948 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.013 4.013 24 C 0.011 3.989 25 O -0.233 6.233 26 C -0.061 4.061 27 C -0.058 4.058 28 O -0.236 6.236 29 H 0.071 0.929 30 H 0.010 0.990 31 H 0.003 0.997 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.246 0.754 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.165 0.835 42 H 0.179 0.821 43 H 0.168 0.832 44 H 0.098 0.902 45 H 0.164 0.836 46 H 0.170 0.830 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.674 -26.556 -13.520 30.026 hybrid contribution -0.062 0.023 -0.115 0.132 sum 3.611 -26.533 -13.635 30.049 Atomic orbital electron populations 1.70095 1.07798 1.27705 1.51987 1.25989 0.95765 1.03349 0.94894 0.85528 0.78290 0.78187 0.79211 1.18973 1.20916 1.19347 1.21711 0.93569 0.92496 1.50092 0.92217 1.19043 0.94546 0.93423 0.94452 1.21281 0.97544 0.92110 1.01184 1.21457 0.96706 0.93280 1.01765 1.21591 0.95428 0.89660 0.96038 0.86331 1.59054 1.17560 1.54825 1.03134 1.22422 0.78911 0.88665 0.82766 1.90655 1.58988 1.58492 1.38235 1.46080 1.56878 1.23125 1.09783 1.19891 0.96550 0.86268 0.92071 1.19226 0.93239 1.05164 0.94065 1.21196 0.94686 0.98919 0.97065 1.21251 1.00631 0.98781 0.92346 1.20833 0.90303 1.00031 1.01871 1.19097 0.92159 1.02531 0.87531 1.18827 0.86278 1.02448 0.91386 1.86345 1.22146 1.66305 1.48518 1.23932 0.97779 0.93823 0.90590 1.23901 0.80299 1.04346 0.97262 1.86285 1.16832 1.77886 1.42645 0.92874 0.98977 0.99720 0.92475 0.92755 0.91023 0.93364 0.84039 0.83801 0.75417 0.90770 0.91794 0.83500 0.82122 0.83168 0.90205 0.83564 0.82981 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.95 13.29 21.45 0.28 -57.66 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 3 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 4 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.54 -31.40 9.11 25.60 0.23 -31.17 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.08 -3.44 5.04 30.59 0.15 -3.29 16 11 C -0.09 -3.14 4.84 30.59 0.15 -2.99 16 12 C 0.09 2.41 3.15 44.17 0.14 2.55 16 13 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 14 N -0.82 -22.40 8.44 -171.82 -1.45 -23.85 16 15 C 0.49 13.52 7.07 87.66 0.62 14.14 16 16 O -0.58 -19.90 16.25 -3.05 -0.05 -19.95 16 17 N -0.71 -16.24 5.55 -466.80 -2.59 -18.83 16 18 C 0.18 3.87 5.44 85.64 0.47 4.34 16 19 C -0.12 -2.25 5.26 -19.76 -0.10 -2.36 16 20 C -0.10 -1.63 9.66 22.26 0.22 -1.41 16 21 C -0.11 -1.55 10.04 22.26 0.22 -1.33 16 22 C -0.11 -1.75 9.96 22.37 0.22 -1.53 16 23 C 0.03 0.60 6.49 22.56 0.15 0.74 16 24 C 0.06 1.12 6.47 22.56 0.15 1.27 16 25 O -0.32 -6.05 9.60 -82.46 -0.79 -6.84 16 26 C 0.01 0.15 7.26 72.14 0.52 0.67 16 27 C 0.02 0.17 7.26 72.14 0.52 0.69 16 28 O -0.32 -5.49 10.42 -82.62 -0.86 -6.35 16 29 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 30 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 31 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H 0.06 2.42 7.75 -2.39 -0.02 2.40 16 33 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.35 10.08 8.58 -89.69 -0.77 9.31 16 37 H 0.35 8.20 9.06 -89.69 -0.81 7.39 16 38 H 0.41 8.27 8.46 -92.70 -0.78 7.49 16 39 H 0.07 1.66 8.00 -2.39 -0.02 1.64 16 40 H 0.06 1.57 7.83 -2.39 -0.02 1.55 16 41 H 0.15 1.99 8.03 -2.91 -0.02 1.96 16 42 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 43 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.15 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.15 0.53 8.14 -2.38 -0.02 0.51 16 47 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -75.69 393.19 -0.52 -76.21 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: -1.36 Total: 28.32 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 4.27 Total: -18.01 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -3.75 Total: -100.35 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.70 Total: -33.14 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -75.69 -0.52 -76.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341240786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.037 kcal (2) G-P(sol) polarization free energy of solvation -75.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds