Wall clock time and date at job start Tue Mar 31 2020 22:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00221 * 2 1 4 4 H 1.48497 * 109.47203 * 270.00123 * 3 2 1 5 5 H 1.48497 * 109.46752 * 29.99952 * 3 2 1 6 6 H 1.48493 * 109.46918 * 149.99499 * 3 2 1 7 7 C 1.37882 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99468 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00306 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47277 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47125 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46995 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.46594 * 54.99935 * 12 11 10 14 14 N 1.46897 * 109.47379 * 295.00228 * 12 11 10 15 15 C 1.50701 * 109.46906 * 174.99730 * 12 11 10 16 16 O 1.21285 * 119.99318 * 100.00176 * 15 12 11 17 17 N 1.34768 * 120.00392 * 280.00075 * 15 12 11 18 18 C 1.46496 * 120.00061 * 179.97438 * 17 15 12 19 19 C 1.50707 * 109.47291 * 180.02562 * 18 17 15 20 20 C 1.38241 * 119.96721 * 260.00414 * 19 18 17 21 21 C 1.38211 * 120.11477 * 179.97438 * 20 19 18 22 22 C 1.38241 * 120.11123 * 0.34633 * 21 20 19 23 23 C 1.38653 * 120.06117 * 359.44739 * 22 21 20 24 24 C 1.38658 * 119.96519 * 79.97895 * 19 18 17 25 25 O 1.36100 * 119.41071 * 359.62891 * 24 19 18 26 26 C 1.43169 * 116.71599 * 162.89788 * 25 24 19 27 27 C 1.53465 * 108.26514 * 46.18888 * 26 25 24 28 28 O 1.36110 * 119.39731 * 180.02562 * 23 22 21 29 29 H 0.96999 * 119.99949 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.46804 * 59.99970 * 9 7 2 31 31 H 1.09005 * 109.47226 * 300.00378 * 9 7 2 32 32 H 1.08998 * 109.46974 * 60.00039 * 10 9 7 33 33 H 1.09007 * 109.46747 * 300.00125 * 10 9 7 34 34 H 1.09006 * 109.46890 * 59.99933 * 11 10 9 35 35 H 1.08994 * 109.46883 * 300.00033 * 11 10 9 36 36 H 1.00900 * 111.00067 * 299.99987 * 14 12 11 37 37 H 1.00904 * 110.99924 * 63.95358 * 14 12 11 38 38 H 0.97006 * 120.00124 * 0.02562 * 17 15 12 39 39 H 1.09000 * 109.46952 * 60.00751 * 18 17 15 40 40 H 1.08996 * 109.47656 * 300.00450 * 18 17 15 41 41 H 1.08006 * 119.94210 * 0.02562 * 20 19 18 42 42 H 1.08002 * 119.94054 * 180.02562 * 21 20 19 43 43 H 1.07998 * 119.96495 * 179.70446 * 22 21 20 44 44 H 1.08998 * 109.70555 * 286.48818 * 26 25 24 45 45 H 1.09009 * 109.73820 * 165.89825 * 26 25 24 46 46 H 1.09000 * 109.71060 * 180.60241 * 27 26 25 47 47 H 1.08992 * 109.75105 * 59.99020 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9872 0.0012 12 6 2.4744 -6.1501 0.0018 13 1 3.1579 -6.0432 0.8442 14 7 3.2384 -6.1419 -1.2528 15 6 1.7248 -7.4517 0.1251 16 8 1.5133 -8.1252 -0.8611 17 7 1.2897 -7.8671 1.3310 18 6 0.5605 -9.1321 1.4507 19 6 0.1885 -9.3631 2.8927 20 6 0.9443 -10.2185 3.6724 21 6 0.6062 -10.4322 4.9954 22 6 -0.4933 -9.7966 5.5415 23 6 -1.2531 -8.9341 4.7661 24 6 -0.9114 -8.7169 3.4362 25 8 -1.6413 -7.8713 2.6588 26 6 -2.9500 -7.5319 3.1298 27 6 -2.8480 -7.1768 4.6193 28 8 -2.3326 -8.3151 5.3177 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 2.8711 -3.6040 0.8923 33 1 2.8725 -3.6047 -0.8878 34 1 0.8544 -5.0450 -0.8895 35 1 0.8525 -5.0447 0.8904 36 1 2.6268 -6.2396 -2.0493 37 1 3.8002 -5.3071 -1.3285 38 1 1.4586 -7.3282 2.1197 39 1 1.1919 -9.9497 1.1027 40 1 -0.3445 -9.0887 0.8448 41 1 1.8011 -10.7202 3.2472 42 1 1.1989 -11.1008 5.6020 43 1 -0.7582 -9.9689 6.5742 44 1 -3.6194 -8.3822 2.9997 45 1 -3.3311 -6.6757 2.5731 46 1 -3.8355 -6.9243 5.0055 47 1 -2.1744 -6.3301 4.7508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341240787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:13 Heat of formation + Delta-G solvation = -101.925444 kcal Electronic energy + Delta-G solvation = -28537.682925 eV Core-core repulsion = 24492.235283 eV Total energy + Delta-G solvation = -4045.447642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -41.61696 -39.74879 -38.24396 -37.58560 -36.02007 -34.78477 -33.34416 -31.53362 -31.43991 -31.22248 -28.72793 -28.05402 -26.71905 -25.13698 -24.72063 -22.55131 -21.74867 -21.31737 -20.23997 -20.02474 -18.88836 -17.74478 -17.58371 -17.04887 -16.32925 -16.22448 -15.63341 -15.39119 -15.13567 -14.97566 -14.89195 -14.58344 -14.54599 -14.45869 -14.30665 -13.79212 -13.58587 -13.27336 -13.02402 -12.70582 -12.40873 -12.19209 -12.08653 -11.94885 -11.79143 -11.50831 -11.38014 -11.19596 -10.81786 -10.74257 -10.71602 -10.57369 -9.82612 -9.75611 -9.39393 -9.14492 -9.04246 -8.89743 -8.43826 -8.39451 -8.37377 -6.04129 -4.06857 0.82176 0.98435 2.69024 2.82122 2.91873 3.11295 3.28930 3.35308 3.38445 3.54356 3.86235 4.21021 4.42207 4.49861 4.53163 4.59180 4.77354 4.87319 4.89762 4.91266 4.96854 5.14114 5.17961 5.26280 5.31033 5.32254 5.38167 5.42480 5.69806 5.75287 5.80660 5.92722 6.00719 6.12329 6.28452 6.28727 6.42487 6.58447 6.59468 6.75721 7.02953 7.07042 7.21516 7.58855 7.61973 7.65127 7.75336 7.95357 8.36049 8.37547 9.00335 9.57585 11.07110 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.002709 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.027881 B =10331.715099 C =12009.691922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.109 4.109 11 C -0.146 4.146 12 C 0.076 3.924 13 H 0.098 0.902 14 N -0.830 5.830 15 C 0.526 3.474 16 O -0.537 6.537 17 N -0.724 5.724 18 C 0.173 3.827 19 C -0.104 4.104 20 C -0.098 4.098 21 C -0.118 4.118 22 C -0.108 4.108 23 C 0.047 3.953 24 C 0.070 3.930 25 O -0.296 6.296 26 C 0.019 3.981 27 C 0.020 3.980 28 O -0.308 6.308 29 H 0.260 0.740 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.349 0.651 37 H 0.351 0.649 38 H 0.401 0.599 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.135 0.865 44 H 0.077 0.923 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.486 -21.465 11.620 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.185 4.185 12 C -0.039 4.039 13 H 0.116 0.884 14 N -0.362 5.362 15 C 0.312 3.688 16 O -0.413 6.413 17 N -0.377 5.377 18 C 0.050 3.950 19 C -0.105 4.105 20 C -0.116 4.116 21 C -0.137 4.137 22 C -0.127 4.127 23 C 0.002 3.998 24 C 0.024 3.976 25 O -0.209 6.209 26 C -0.056 4.056 27 C -0.056 4.056 28 O -0.223 6.223 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.235 0.765 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.095 0.905 45 H 0.144 0.856 46 H 0.141 0.859 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.493 -22.458 11.145 25.314 hybrid contribution -0.429 2.307 0.299 2.366 sum -3.922 -20.151 11.445 23.504 Atomic orbital electron populations 1.69966 1.06082 1.26607 1.50848 1.25034 0.94849 0.99297 0.95294 0.86597 0.79853 0.83442 0.78146 1.20634 1.21233 1.19844 1.21257 0.93026 0.91089 1.50612 0.92679 1.19072 0.93929 0.91287 0.97156 1.21652 0.99119 0.93548 1.00321 1.22390 0.98308 0.95056 1.02779 1.21421 0.95458 0.91402 0.95630 0.88401 1.58689 1.28224 1.45979 1.03320 1.20698 0.78478 0.87090 0.82530 1.90653 1.56836 1.56795 1.36992 1.45967 1.58308 1.23396 1.10046 1.19925 0.97089 0.86780 0.91224 1.19265 0.95830 0.98997 0.96445 1.20926 0.99251 0.97795 0.93663 1.20905 0.96840 1.00584 0.95339 1.20494 0.94518 0.97738 0.99921 1.18896 0.91370 0.98769 0.90742 1.18769 0.94868 0.95258 0.88733 1.86427 1.27511 1.60849 1.46148 1.23687 0.83244 1.03108 0.95578 1.23677 1.01903 0.87565 0.92442 1.86302 1.43055 1.43258 1.49678 0.93007 0.96729 0.96696 0.93090 0.93343 0.91813 0.91609 0.83757 0.83429 0.76482 0.90592 0.90477 0.84759 0.84822 0.84761 0.90460 0.85591 0.85892 0.90007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.11 4.92 -26.73 -0.13 -2.24 16 11 C -0.15 -2.40 4.84 -26.73 -0.13 -2.53 16 12 C 0.08 1.10 3.21 -68.86 -0.22 0.88 16 13 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 14 N -0.83 -12.08 8.94 -5.65 -0.05 -12.13 16 15 C 0.53 7.95 7.08 -10.99 -0.08 7.87 16 16 O -0.54 -9.85 16.25 5.55 0.09 -9.76 16 17 N -0.72 -8.93 5.55 -61.47 -0.34 -9.27 16 18 C 0.17 1.99 5.44 -5.19 -0.03 1.96 16 19 C -0.10 -1.06 5.26 -104.46 -0.55 -1.61 16 20 C -0.10 -0.81 9.66 -39.59 -0.38 -1.19 16 21 C -0.12 -0.89 10.04 -39.59 -0.40 -1.28 16 22 C -0.11 -0.94 9.96 -39.43 -0.39 -1.33 16 23 C 0.05 0.50 6.49 -39.14 -0.25 0.24 16 24 C 0.07 0.77 6.47 -39.14 -0.25 0.52 16 25 O -0.30 -3.41 9.60 -32.84 -0.32 -3.72 16 26 C 0.02 0.16 7.26 37.40 0.27 0.43 16 27 C 0.02 0.15 7.26 37.40 0.27 0.42 16 28 O -0.31 -3.15 10.42 -32.87 -0.34 -3.49 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.91 6.87 -51.93 -0.36 0.55 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.35 5.26 8.58 -39.29 -0.34 4.92 16 37 H 0.35 4.77 7.55 -39.29 -0.30 4.47 16 38 H 0.40 4.40 8.46 -40.82 -0.35 4.06 16 39 H 0.08 0.83 8.00 -51.93 -0.42 0.42 16 40 H 0.08 1.00 7.83 -51.93 -0.41 0.60 16 41 H 0.13 0.87 8.03 -52.48 -0.42 0.45 16 42 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.13 0.84 8.14 -51.92 -0.42 0.41 16 46 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -34.25 391.24 -9.37 -43.61 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.19 Total: 9.23 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.82 Total: -10.81 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.34 Total: -47.41 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.57 Total: -16.97 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.25 -9.37 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341240787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.311 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds