Wall clock time and date at job start Tue Mar 31 2020 22:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00221 * 2 1 4 4 H 1.48497 * 109.47203 * 270.00123 * 3 2 1 5 5 H 1.48497 * 109.46752 * 29.99952 * 3 2 1 6 6 H 1.48493 * 109.46918 * 149.99499 * 3 2 1 7 7 C 1.37882 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99468 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00306 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47277 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47125 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46995 * 179.97438 * 11 10 9 13 13 H 1.09000 * 109.46594 * 54.99935 * 12 11 10 14 14 N 1.46897 * 109.47379 * 295.00228 * 12 11 10 15 15 C 1.50701 * 109.46906 * 174.99730 * 12 11 10 16 16 O 1.21285 * 119.99318 * 100.00176 * 15 12 11 17 17 N 1.34768 * 120.00392 * 280.00075 * 15 12 11 18 18 C 1.46496 * 120.00061 * 179.97438 * 17 15 12 19 19 C 1.50707 * 109.47291 * 180.02562 * 18 17 15 20 20 C 1.38241 * 119.96721 * 260.00414 * 19 18 17 21 21 C 1.38211 * 120.11477 * 179.97438 * 20 19 18 22 22 C 1.38241 * 120.11123 * 0.34633 * 21 20 19 23 23 C 1.38653 * 120.06117 * 359.44739 * 22 21 20 24 24 C 1.38658 * 119.96519 * 79.97895 * 19 18 17 25 25 O 1.36100 * 119.41071 * 359.62891 * 24 19 18 26 26 C 1.43169 * 116.71599 * 162.89788 * 25 24 19 27 27 C 1.53465 * 108.26514 * 46.18888 * 26 25 24 28 28 O 1.36110 * 119.39731 * 180.02562 * 23 22 21 29 29 H 0.96999 * 119.99949 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.46804 * 59.99970 * 9 7 2 31 31 H 1.09005 * 109.47226 * 300.00378 * 9 7 2 32 32 H 1.08998 * 109.46974 * 60.00039 * 10 9 7 33 33 H 1.09007 * 109.46747 * 300.00125 * 10 9 7 34 34 H 1.09006 * 109.46890 * 59.99933 * 11 10 9 35 35 H 1.08994 * 109.46883 * 300.00033 * 11 10 9 36 36 H 1.00900 * 111.00067 * 299.99987 * 14 12 11 37 37 H 1.00904 * 110.99924 * 63.95358 * 14 12 11 38 38 H 0.97006 * 120.00124 * 0.02562 * 17 15 12 39 39 H 1.09000 * 109.46952 * 60.00751 * 18 17 15 40 40 H 1.08996 * 109.47656 * 300.00450 * 18 17 15 41 41 H 1.08006 * 119.94210 * 0.02562 * 20 19 18 42 42 H 1.08002 * 119.94054 * 180.02562 * 21 20 19 43 43 H 1.07998 * 119.96495 * 179.70446 * 22 21 20 44 44 H 1.08998 * 109.70555 * 286.48818 * 26 25 24 45 45 H 1.09009 * 109.73820 * 165.89825 * 26 25 24 46 46 H 1.09000 * 109.71060 * 180.60241 * 27 26 25 47 47 H 1.08992 * 109.75105 * 59.99020 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4801 -4.9872 0.0012 12 6 2.4744 -6.1501 0.0018 13 1 3.1579 -6.0432 0.8442 14 7 3.2384 -6.1419 -1.2528 15 6 1.7248 -7.4517 0.1251 16 8 1.5133 -8.1252 -0.8611 17 7 1.2897 -7.8671 1.3310 18 6 0.5605 -9.1321 1.4507 19 6 0.1885 -9.3631 2.8927 20 6 0.9443 -10.2185 3.6724 21 6 0.6062 -10.4322 4.9954 22 6 -0.4933 -9.7966 5.5415 23 6 -1.2531 -8.9341 4.7661 24 6 -0.9114 -8.7169 3.4362 25 8 -1.6413 -7.8713 2.6588 26 6 -2.9500 -7.5319 3.1298 27 6 -2.8480 -7.1768 4.6193 28 8 -2.3326 -8.3151 5.3177 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6239 -2.5567 0.8903 32 1 2.8711 -3.6040 0.8923 33 1 2.8725 -3.6047 -0.8878 34 1 0.8544 -5.0450 -0.8895 35 1 0.8525 -5.0447 0.8904 36 1 2.6268 -6.2396 -2.0493 37 1 3.8002 -5.3071 -1.3285 38 1 1.4586 -7.3282 2.1197 39 1 1.1919 -9.9497 1.1027 40 1 -0.3445 -9.0887 0.8448 41 1 1.8011 -10.7202 3.2472 42 1 1.1989 -11.1008 5.6020 43 1 -0.7582 -9.9689 6.5742 44 1 -3.6194 -8.3822 2.9997 45 1 -3.3311 -6.6757 2.5731 46 1 -3.8355 -6.9243 5.0055 47 1 -2.1744 -6.3301 4.7508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341240787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:10 Heat of formation + Delta-G solvation = -126.401941 kcal Electronic energy + Delta-G solvation = -28538.744306 eV Core-core repulsion = 24492.235283 eV Total energy + Delta-G solvation = -4046.509023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -42.32650 -40.92371 -38.97950 -38.32408 -37.42752 -35.84260 -35.26721 -33.00109 -32.27462 -32.17004 -29.51885 -29.41262 -27.97801 -26.28363 -25.69477 -24.12883 -22.60253 -21.97596 -21.87029 -21.21241 -19.63027 -18.63136 -18.47047 -18.38969 -17.96708 -17.22596 -16.55044 -16.35233 -16.27627 -16.15131 -16.05896 -15.82300 -15.61468 -15.33484 -15.20347 -14.88265 -14.62210 -14.43463 -14.24337 -13.84403 -13.76947 -13.63363 -13.40257 -12.91378 -12.83103 -12.74958 -12.57482 -12.41822 -12.36147 -12.16240 -12.03804 -11.51533 -11.44989 -11.43296 -11.27930 -10.82603 -10.56807 -10.12788 -9.72622 -9.57106 -9.10434 -8.21121 -6.32376 0.10906 0.30406 1.39955 1.40846 1.51920 1.60629 2.01371 2.16783 2.28552 2.40233 2.74568 3.12317 3.19384 3.51505 3.67928 3.75602 3.85473 3.88966 3.94360 3.98894 4.08637 4.17047 4.27109 4.32741 4.40197 4.45574 4.53873 4.55464 4.60731 4.69232 4.75449 4.87123 5.00252 5.11468 5.16949 5.22665 5.23956 5.37043 5.46442 5.51027 5.68215 5.71800 5.84020 5.89425 6.05054 6.22961 6.35819 6.49156 6.52382 6.85360 7.21348 7.37360 8.90625 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.002709 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.027881 B =10331.715099 C =12009.691922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.094 4.094 11 C -0.132 4.132 12 C 0.086 3.914 13 H 0.121 0.879 14 N -0.830 5.830 15 C 0.524 3.476 16 O -0.573 6.573 17 N -0.711 5.711 18 C 0.178 3.822 19 C -0.115 4.115 20 C -0.094 4.094 21 C -0.110 4.110 22 C -0.111 4.111 23 C 0.028 3.972 24 C 0.051 3.949 25 O -0.321 6.321 26 C 0.013 3.987 27 C 0.019 3.981 28 O -0.320 6.320 29 H 0.263 0.737 30 H -0.016 1.016 31 H -0.010 1.010 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.345 0.655 37 H 0.357 0.643 38 H 0.409 0.591 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.155 0.845 42 H 0.166 0.834 43 H 0.150 0.850 44 H 0.083 0.917 45 H 0.137 0.863 46 H 0.152 0.848 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.756 -21.985 13.085 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.082 0.918 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.172 4.172 12 C -0.030 4.030 13 H 0.139 0.861 14 N -0.362 5.362 15 C 0.311 3.689 16 O -0.452 6.452 17 N -0.362 5.362 18 C 0.055 3.945 19 C -0.117 4.117 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.130 4.130 23 C -0.017 4.017 24 C 0.005 3.995 25 O -0.236 6.236 26 C -0.062 4.062 27 C -0.056 4.056 28 O -0.235 6.235 29 H 0.072 0.928 30 H 0.003 0.997 31 H 0.009 0.991 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.172 0.828 38 H 0.245 0.755 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.173 0.827 42 H 0.184 0.816 43 H 0.168 0.832 44 H 0.102 0.898 45 H 0.155 0.845 46 H 0.169 0.831 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.752 -22.985 12.645 26.292 hybrid contribution -1.024 2.430 -0.115 2.640 sum -2.776 -20.555 12.530 24.232 Atomic orbital electron populations 1.70103 1.07873 1.27716 1.51828 1.25999 0.95742 1.03436 0.94790 0.85459 0.78781 0.78457 0.78447 1.19940 1.20898 1.18452 1.21729 0.93683 0.92285 1.50284 0.91831 1.18990 0.94449 0.93310 0.94490 1.21434 0.97935 0.92487 1.01315 1.22205 0.98320 0.94665 1.02055 1.21360 0.95070 0.90037 0.96490 0.86118 1.58706 1.28070 1.46275 1.03181 1.20787 0.78326 0.87070 0.82731 1.90639 1.58356 1.57916 1.38255 1.45911 1.57136 1.23670 1.09531 1.19882 0.96144 0.86372 0.92152 1.19257 0.96399 1.00187 0.95824 1.21212 0.99296 0.96848 0.93911 1.21278 0.96284 1.00037 0.95167 1.20850 0.94496 0.97024 1.00617 1.19183 0.92007 0.99658 0.90883 1.18983 0.95411 0.95843 0.89217 1.86368 1.28771 1.61303 1.47155 1.23886 0.82296 1.03810 0.96165 1.23835 1.03025 0.86657 0.92086 1.86273 1.43187 1.43882 1.50206 0.92849 0.99744 0.99135 0.91839 0.92447 0.93455 0.91566 0.84170 0.82751 0.75528 0.89869 0.92578 0.82699 0.81606 0.83185 0.89848 0.84509 0.83082 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.54 -30.32 9.11 25.60 0.23 -30.08 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.59 4.92 30.59 0.15 -3.44 16 11 C -0.13 -4.34 4.84 30.60 0.15 -4.19 16 12 C 0.09 2.37 3.21 44.17 0.14 2.51 16 13 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 14 N -0.83 -23.22 8.94 -171.80 -1.54 -24.76 16 15 C 0.52 15.59 7.08 87.66 0.62 16.21 16 16 O -0.57 -21.08 16.25 -3.05 -0.05 -21.13 16 17 N -0.71 -17.14 5.55 -466.80 -2.59 -19.73 16 18 C 0.18 4.06 5.44 85.64 0.47 4.52 16 19 C -0.12 -2.29 5.26 -19.76 -0.10 -2.39 16 20 C -0.09 -1.36 9.66 22.26 0.22 -1.14 16 21 C -0.11 -1.34 10.04 22.26 0.22 -1.12 16 22 C -0.11 -1.74 9.96 22.37 0.22 -1.52 16 23 C 0.03 0.57 6.49 22.56 0.15 0.71 16 24 C 0.05 1.14 6.47 22.56 0.15 1.29 16 25 O -0.32 -7.69 9.60 -82.47 -0.79 -8.48 16 26 C 0.01 0.23 7.26 72.14 0.52 0.75 16 27 C 0.02 0.29 7.26 72.14 0.52 0.81 16 28 O -0.32 -6.44 10.42 -82.58 -0.86 -7.30 16 29 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 30 H -0.02 -0.91 8.14 -2.38 -0.02 -0.92 16 31 H -0.01 -0.55 8.14 -2.38 -0.02 -0.56 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.06 2.09 6.87 -2.38 -0.02 2.07 16 34 H 0.05 1.70 8.14 -2.38 -0.02 1.69 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 36 H 0.35 10.28 8.58 -89.69 -0.77 9.51 16 37 H 0.36 9.12 7.55 -89.69 -0.68 8.44 16 38 H 0.41 8.60 8.46 -92.70 -0.78 7.81 16 39 H 0.08 1.77 8.00 -2.39 -0.02 1.75 16 40 H 0.06 1.52 7.83 -2.39 -0.02 1.51 16 41 H 0.16 1.55 8.03 -2.91 -0.02 1.52 16 42 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 43 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 44 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.14 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -74.78 391.24 -0.47 -75.25 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -1.22 Total: 32.12 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 4.27 Total: -15.31 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -3.84 Total: -100.96 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -1.70 Total: -36.90 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -74.78 -0.47 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341240787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.147 kcal (2) G-P(sol) polarization free energy of solvation -74.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds